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(-) Description

Title :  STRUCTURAL AND FUNCTIONAL INSIGHTS OF DR2231 PROTEIN, THE MAZG-LIKE NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE FROM DEINOCOCCUS RADIODURANS, COMPLEX WITH GD
 
Authors :  A. M. D. Goncalves, D. De Sanctis, S. M. Mcsweeney
Date :  30 Mar 11  (Deposition) - 06 Jul 11  (Release) - 07 Sep 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Hydrolase, Dimeric Dutpase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. M. D. Goncalves, D. Desanctis, S. M. Mcsweeney
Structural And Functional Insights Into Dr2231 Protein, The Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans.
J. Biol. Chem. V. 286 30691 2011
PubMed-ID: 21733847  |  Reference-DOI: 10.1074/JBC.M111.247999

(-) Compounds

Molecule 1 - DR2231
    Chains: A, B, C, D, E, F
    EC Number: 3.6.1.19
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET151/D-TOPO
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 243230
    Strain: R1

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 43)

Asymmetric Unit (3, 43)
No.NameCountTypeFull Name
1GD6Ligand/IonGADOLINIUM ATOM
2GOL21Ligand/IonGLYCEROL
3SO416Ligand/IonSULFATE ION
Biological Unit 1 (2, 14)
No.NameCountTypeFull Name
1GD-1Ligand/IonGADOLINIUM ATOM
2GOL9Ligand/IonGLYCEROL
3SO45Ligand/IonSULFATE ION
Biological Unit 2 (2, 12)
No.NameCountTypeFull Name
1GD-1Ligand/IonGADOLINIUM ATOM
2GOL7Ligand/IonGLYCEROL
3SO45Ligand/IonSULFATE ION
Biological Unit 3 (2, 11)
No.NameCountTypeFull Name
1GD-1Ligand/IonGADOLINIUM ATOM
2GOL5Ligand/IonGLYCEROL
3SO46Ligand/IonSULFATE ION

(-) Sites  (43, 43)

Asymmetric Unit (43, 43)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:19 , ARG A:38 , HOH A:2122 , HOH A:2123 , HOH A:2124BINDING SITE FOR RESIDUE SO4 A1144
02AC2SOFTWAREARG B:38 , HOH B:2109 , HOH B:2111 , ARG C:19BINDING SITE FOR RESIDUE SO4 B1145
03AC3SOFTWARESER B:69 , ALA B:70 , GLY B:71 , HOH B:2112 , GLY C:128 , ARG C:130BINDING SITE FOR RESIDUE SO4 B1146
04AC4SOFTWAREARG D:19 , ARG E:38 , HOH E:2081 , HOH E:2082 , HOH F:2034BINDING SITE FOR RESIDUE SO4 E1145
05AC5SOFTWAREGLU D:127 , GLY D:128 , SER E:69 , GLY E:71BINDING SITE FOR RESIDUE SO4 D1145
06AC6SOFTWARELYS F:112 , LYS F:122 , LYS F:125 , HOH F:2075 , HOH F:2092BINDING SITE FOR RESIDUE SO4 F1144
07AC7SOFTWARESER C:69 , GLY C:71 , GLU F:127 , GLY F:128 , HOH F:2081 , HOH F:2093BINDING SITE FOR RESIDUE SO4 F1145
08AC8SOFTWAREARG A:118 , LYS A:122BINDING SITE FOR RESIDUE SO4 A1145
09AC9SOFTWAREARG A:19 , HOH C:2140 , HOH C:2141BINDING SITE FOR RESIDUE SO4 C1145
10BC1SOFTWAREARG D:19 , HOH D:2118BINDING SITE FOR RESIDUE SO4 D1146
11BC2SOFTWAREARG E:118 , LYS E:122BINDING SITE FOR RESIDUE SO4 E1146
12BC3SOFTWAREARG C:38 , ARG E:19 , HOH E:2083 , HOH E:2084 , HOH E:2085BINDING SITE FOR RESIDUE SO4 E1147
13BC4SOFTWAREARG D:135 , ARG F:135BINDING SITE FOR RESIDUE SO4 F1146
14BC5SOFTWARESER C:48 , ARG C:52 , HOH C:2142 , SER D:48 , ARG D:52 , HOH D:2046 , HOH D:2048BINDING SITE FOR RESIDUE SO4 C1146
15BC6SOFTWAREALA A:132 , ASP A:133 , VAL A:134 , ARG A:135 , GOL A:1149 , HIS B:78BINDING SITE FOR RESIDUE SO4 A1146
16BC7SOFTWAREGLU C:35 , ARG C:38 , HOH C:2049BINDING SITE FOR RESIDUE SO4 C1147
17BC8SOFTWAREGLU A:27BINDING SITE FOR RESIDUE GOL A1147
18BC9SOFTWAREASP E:45 , SER E:48 , ARG E:52 , ASP F:45 , SER F:48 , ARG F:52BINDING SITE FOR RESIDUE GOL E1148
19CC1SOFTWAREGLN C:142 , SER D:69 , GLY D:71 , HOH D:2119 , HOH D:2120BINDING SITE FOR RESIDUE GOL D1147
20CC2SOFTWAREPRO B:-2 , VAL C:105 , ASN C:109 , GLU D:47 , ASP D:82 , HOH D:2051BINDING SITE FOR RESIDUE GOL D1148
21CC3SOFTWAREPRO A:-2 , GLU A:47 , ASP A:82 , TYR A:85 , VAL A:86 , HOH A:2078 , VAL B:105 , ASN B:109BINDING SITE FOR RESIDUE GOL A1148
22CC4SOFTWAREGLU C:47 , ASP C:82 , VAL C:86 , VAL D:105 , ASN D:109 , PRO E:-2BINDING SITE FOR RESIDUE GOL C1148
23CC5SOFTWAREGLN B:93 , MET C:1 , SER C:2 , ASP C:3BINDING SITE FOR RESIDUE GOL B1147
24CC6SOFTWAREARG C:38 , HIS E:15 , ARG E:19BINDING SITE FOR RESIDUE GOL E1149
25CC7SOFTWAREARG A:135 , SO4 A:1146 , HOH C:2127BINDING SITE FOR RESIDUE GOL A1149
26CC8SOFTWARESER A:69 , ALA A:70 , GLY A:71 , GLN B:142BINDING SITE FOR RESIDUE GOL A1150
27CC9SOFTWAREGLU E:139 , GLN E:142 , SER F:69 , GLY F:71BINDING SITE FOR RESIDUE GOL F1147
28DC1SOFTWAREPRO A:75 , HIS A:78 , ALA B:132 , ASP B:133 , VAL B:134 , ARG B:135BINDING SITE FOR RESIDUE GOL B1148
29DC2SOFTWAREGLY A:-5 , ARG B:118 , LYS B:122BINDING SITE FOR RESIDUE GOL B1149
30DC3SOFTWAREVAL E:105 , ASN E:109 , PRO F:-2 , GLU F:47 , ASP F:82 , TYR F:85BINDING SITE FOR RESIDUE GOL F1148
31DC4SOFTWAREARG D:118 , LYS D:122BINDING SITE FOR RESIDUE GOL D1149
32DC5SOFTWAREHIS C:57 , ARG F:118 , LYS F:122BINDING SITE FOR RESIDUE GOL F1149
33DC6SOFTWARELYS D:122 , GLN D:123 , LEU D:124 , LYS D:125 , HOH D:2121 , HOH D:2122 , ARG E:61 , GLU E:66 , HOH E:2047BINDING SITE FOR RESIDUE GOL D1150
34DC7SOFTWAREPRO C:31 , PRO C:32 , PRO C:33 , GLN D:62 , GLU D:66 , ALA D:67 , LEU D:68BINDING SITE FOR RESIDUE GOL D1151
35DC8SOFTWAREGLN D:62 , GLY D:65 , GLU D:66 , HOH D:2069 , GLU E:16 , HOH E:2012 , LEU F:110BINDING SITE FOR RESIDUE GOL D1152
36DC9SOFTWAREPRO B:26 , GLU B:27 , ARG B:28BINDING SITE FOR RESIDUE GOL B1150
37EC1SOFTWARELYS B:112 , LYS B:122 , LYS B:125 , HOH B:2113 , HOH B:2114 , HIS F:57BINDING SITE FOR RESIDUE GOL B1151
38EC2SOFTWAREGLU A:47 , GLU A:50 , GLU A:79 , ASP A:82 , HOH A:2054 , HOH A:2079 , HOH A:2080BINDING SITE FOR RESIDUE GD A1151
39EC3SOFTWAREGLU B:47 , GLU B:50 , GLU B:79 , ASP B:82 , HOH B:2052 , HOH B:2074 , HOH B:2075BINDING SITE FOR RESIDUE GD B1152
40EC4SOFTWAREGLU C:47 , GLU C:50 , GLU C:79 , ASP C:82 , HOH C:2062 , HOH C:2097 , HOH C:2099BINDING SITE FOR RESIDUE GD C1149
41EC5SOFTWAREGLU D:47 , GLU D:50 , GLU D:79 , ASP D:82 , HOH D:2051 , HOH D:2054 , HOH D:2077BINDING SITE FOR RESIDUE GD D1153
42EC6SOFTWAREGLU E:47 , GLU E:50 , GLU E:79 , ASP E:82 , HOH E:2039 , HOH E:2052 , HOH E:2056BINDING SITE FOR RESIDUE GD E1150
43EC7SOFTWAREGLU F:47 , GLU F:50 , GLU F:79 , ASP F:82 , HOH F:2022 , HOH F:2045 , HOH F:2046BINDING SITE FOR RESIDUE GD F1150

(-) SS Bonds  (3, 3)

Asymmetric Unit
No.Residues
1A:6 -B:6
2C:6 -D:6
3E:6 -F:6

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2YEU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2YEU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2YEU)

(-) Exons   (0, 0)

(no "Exon" information available for 2YEU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:149
 aligned with Q9RS96_DEIRA | Q9RS96 from UniProtKB/TrEMBL  Length:148

    Alignment length:149
                                  1                                                                                                                                              
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134         
         Q9RS96_DEIRA     - ------MSDLPCPPTNAERLHEFHRAIGAATPERPTPPPPELLRLRQTLLDEESAEVRAEIDHLLARQAAGEALSAGDLAPLAHELADLLYVTYGALDQLGIDADAVFAEVHRANLSKASGPRRADGKQLKPEGWRPADVRGVIERLQH 143
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh..................hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yeu A  -5 GIDPFTMSDLPCPPTNAERLHEFHRAIGAATPERPTPPPPELLRLRQTLLDEESAEVRAEIDHLLARQAAGEALSAGDLAPLAHELADLLYVTYGALDQLGIDADAVFAEVHRANLSKASGPRRADGKQLKPEGWRPADVRGVIERLQH 143
                                     4        14        24        34        44        54        64        74        84        94       104       114       124       134         


Chain B from PDB  Type:PROTEIN  Length:147
 aligned with Q9RS96_DEIRA | Q9RS96 from UniProtKB/TrEMBL  Length:148

    Alignment length:147
                              2                                                                                                                                                
                             1|  3                                                                                                                                             
                             ||  |   7        17        27        37        47        57        67        77        87        97       107       117       127       137       
         Q9RS96_DEIRA     - -MS--DLPCPPTNAERLHEFHRAIGAATPERPTPPPPELLRLRQTLLDEESAEVRAEIDHLLARQAAGEALSAGDLAPLAHELADLLYVTYGALDQLGIDADAVFAEVHRANLSKASGPRRADGKQLKPEGWRPADVRGVIERLQHA 144
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh..................hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yeu B  -5 GIDPFTMPCPPTNAERLHEFHRAIGAATPERPTPPPPELLRLRQTLLDEESAEVRAEIDHLLARQAAGEALSAGDLAPLAHELADLLYVTYGALDQLGIDADAVFAEVHRANLSKASGPRRADGKQLKPEGWRPADVRGVIERLQHA 144
                                  || 7        17        27        37        47        57        67        77        87        97       107       117       127       137       
                                  1|                                                                                                                                           
                                   5                                                                                                                                           


Chain C from PDB  Type:PROTEIN  Length:149
 aligned with Q9RS96_DEIRA | Q9RS96 from UniProtKB/TrEMBL  Length:148

    Alignment length:149
                                 1                                                                                                                                               
                                 |   5        15        25        35        45        55        65        75        85        95       105       115       125       135         
         Q9RS96_DEIRA     - -----MSDLPCPPTNAERLHEFHRAIGAATPERPTPPPPELLRLRQTLLDEESAEVRAEIDHLLARQAAGEALSAGDLAPLAHELADLLYVTYGALDQLGIDADAVFAEVHRANLSKASGPRRADGKQLKPEGWRPADVRGVIERLQHA 144
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh..................hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yeu C  -4 IDPFTMSDLPCPPTNAERLHEFHRAIGAATPERPTPPPPELLRLRQTLLDEESAEVRAEIDHLLARQAAGEALSAGDLAPLAHELADLLYVTYGALDQLGIDADAVFAEVHRANLSKASGPRRADGKQLKPEGWRPADVRGVIERLQHA 144
                                     5        15        25        35        45        55        65        75        85        95       105       115       125       135         


Chain D from PDB  Type:PROTEIN  Length:150
 aligned with Q9RS96_DEIRA | Q9RS96 from UniProtKB/TrEMBL  Length:148

    Alignment length:150
                                  1                                                                                                                                               
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144
         Q9RS96_DEIRA     - ------MSDLPCPPTNAERLHEFHRAIGAATPERPTPPPPELLRLRQTLLDEESAEVRAEIDHLLARQAAGEALSAGDLAPLAHELADLLYVTYGALDQLGIDADAVFAEVHRANLSKASGPRRADGKQLKPEGWRPADVRGVIERLQHA 144
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhh.....hhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh..................hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2yeu D  -5 GIDPFTMSDLPCPPTNAERLHEFHRAIGAATPERPTPPPPELLRLRQTLLDEESAEVRAEIDHLLARQAAGEALSAGDLAPLAHELADLLYVTYGALDQLGIDADAVFAEVHRANLSKASGPRRADGKQLKPEGWRPADVRGVIERLQHA 144
                                     4        14        24        34        44        54        64        74        84        94       104       114       124       134       144


Chain E from PDB  Type:PROTEIN  Length:148
 aligned with Q9RS96_DEIRA | Q9RS96 from UniProtKB/TrEMBL  Length:148

    Alignment length:149
                                 1                                                                                                                                               
                                 |   5        15        25        35        45        55        65        75        85        95       105       115       125       135         
         Q9RS96_DEIRA     - -----MSDLPCPPTNAERLHEFHRAIGAATPERPTPPPPELLRLRQTLLDEESAEVRAEIDHLLARQAAGEALSAGDLAPLAHELADLLYVTYGALDQLGIDADAVFAEVHRANLSKASGPRRADGKQLKPEGWRPADVRGVIERLQHA 144
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........-....hhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh..................hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yeu E  -5 GIDPFTSD-PCPPTNAERLHEFHRAIGAATPERPTPPPPELLRLRQTLLDEESAEVRAEIDHLLARQAAGEALSAGDLAPLAHELADLLYVTYGALDQLGIDADAVFAEVHRANLSKASGPRRADGKQLKPEGWRPADVRGVIERLQHA 144
                                 ||| 5        15        25        35        45        55        65        75        85        95       105       115       125       135         
                                 0|| 5                                                                                                                                           
                                  2|                                                                                                                                             
                                   3                                                                                                                                             


Chain F from PDB  Type:PROTEIN  Length:146
 aligned with Q9RS96_DEIRA | Q9RS96 from UniProtKB/TrEMBL  Length:148

    Alignment length:146
                              2                                                                                                                                               
                             1|  3                                                                                                                                            
                             ||  |   7        17        27        37        47        57        67        77        87        97       107       117       127       137      
         Q9RS96_DEIRA     - -MS--DLPCPPTNAERLHEFHRAIGAATPERPTPPPPELLRLRQTLLDEESAEVRAEIDHLLARQAAGEALSAGDLAPLAHELADLLYVTYGALDQLGIDADAVFAEVHRANLSKASGPRRADGKQLKPEGWRPADVRGVIERLQH 143
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------------PRA-PH-2yeuF01 F:14-109                                                                         ---------------------------------- Pfam domains (1)
           Pfam domains (2) ----------------PRA-PH-2yeuF02 F:14-109                                                                         ---------------------------------- Pfam domains (2)
           Pfam domains (3) ----------------PRA-PH-2yeuF03 F:14-109                                                                         ---------------------------------- Pfam domains (3)
           Pfam domains (4) ----------------PRA-PH-2yeuF04 F:14-109                                                                         ---------------------------------- Pfam domains (4)
           Pfam domains (5) ----------------PRA-PH-2yeuF05 F:14-109                                                                         ---------------------------------- Pfam domains (5)
           Pfam domains (6) ----------------PRA-PH-2yeuF06 F:14-109                                                                         ---------------------------------- Pfam domains (6)
         Sec.struct. author ...........hhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh..................hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yeu F  -5 GIDPFTMPCPPTNAERLHEFHRAIGAATPERPTPPPPELLRLRQTLLDEESAEVRAEIDHLLARQAAGEALSAGDLAPLAHELADLLYVTYGALDQLGIDADAVFAEVHRANLSKASGPRRADGKQLKPEGWRPADVRGVIERLQH 143
                                  || 7        17        27        37        47        57        67        77        87        97       107       117       127       137      
                                  1|                                                                                                                                          
                                   5
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2YEU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2YEU)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: MazG (25)
(-)
Family: PRA-PH (10)
(-)
Deinococcus radiodurans (6)
1aPRA-PH-2yeuF01F:14-109
1bPRA-PH-2yeuF02F:14-109
1cPRA-PH-2yeuF03F:14-109
1dPRA-PH-2yeuF04F:14-109
1ePRA-PH-2yeuF05F:14-109
1fPRA-PH-2yeuF06F:14-109

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q9RS96_DEIRA | Q9RS96)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0047429    nucleoside-triphosphate diphosphatase activity    Catalysis of the reaction: H2O + a nucleoside triphosphate = diphosphate + a nucleotide.

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 Related Entries

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        Q9RS96_DEIRA | Q9RS96: 2yf3 2yf4 2yf9 2yfc 2yfd 5hva 5hwu 5hx1 5hyl 5hzz 5i0j 5i0m

(-) Related Entries Specified in the PDB File

2yf3 CRYSTAL STRUCTURE OF DR2231, THE MAZG-LIKE PROTEIN FROM DEINOCOCCUS RADIODURANS, COMPLEX WITH MANGANESE
2yf4 CRYSTAL STRUCTURE OF DR2231, THE MAZG-LIKE PROTEIN FROM DEINOCOCCUS RADIODURANS, APO STRUCTURE
2yf9 STRUCTURAL AND FUNCTIONAL INSIGHTS OF DR2231 PROTEIN, THE MAZG-LIKE NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE FROM DEINOCOCCUS RADIODURANS, NATIVE FORM
2yfc STRUCTURAL AND FUNCTIONAL INSIGHTS OF DR2231 PROTEIN, THE MAZG-LIKE NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE FROM DEINOCOCCUS RADIODURANS, COMPLEXED WITH MN AND DUMP
2yfd STRUCTURAL AND FUNCTIONAL INSIGHTS OF DR2231 PROTEIN, THE MAZG-LIKE NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE FROM DEINOCOCCUS RADIODURANS, COMPLEXED WITH MG AND DUMP