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(-) Description

Title :  CRYSTAL STRUCTURE OF DR2231, THE MAZG-LIKE PROTEIN FROM DEINOCOCCUS RADIODURANS, COMPLEX WITH MANGANESE
 
Authors :  A. M. D. Goncalves, D. Desanctis, S. M. Mcsweeney
Date :  01 Apr 11  (Deposition) - 06 Jul 11  (Release) - 05 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Hydrolase, Dimeric Dutpase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. M. D. Goncalves, D. Desanctis, S. M. Mcsweeney
Structural And Functional Insights Into Dr2231 Protein, The Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase From Deinococcus Radiodurans.
J. Biol. Chem. V. 286 30691 2011
PubMed-ID: 21733847  |  Reference-DOI: 10.1074/JBC.M111.247999

(-) Compounds

Molecule 1 - MAZG-LIKE NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE
    Chains: A, B, C, D, E, F
    EC Number: 3.6.1.19
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET151/D-TOPO
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 243230
    Strain: R1

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 55)

Asymmetric Unit (3, 55)
No.NameCountTypeFull Name
1GOL30Ligand/IonGLYCEROL
2MN11Ligand/IonMANGANESE (II) ION
3SO414Ligand/IonSULFATE ION
Biological Unit 1 (2, 15)
No.NameCountTypeFull Name
1GOL9Ligand/IonGLYCEROL
2MN-1Ligand/IonMANGANESE (II) ION
3SO46Ligand/IonSULFATE ION
Biological Unit 2 (2, 19)
No.NameCountTypeFull Name
1GOL14Ligand/IonGLYCEROL
2MN-1Ligand/IonMANGANESE (II) ION
3SO45Ligand/IonSULFATE ION
Biological Unit 3 (2, 10)
No.NameCountTypeFull Name
1GOL7Ligand/IonGLYCEROL
2MN-1Ligand/IonMANGANESE (II) ION
3SO43Ligand/IonSULFATE ION

(-) Sites  (55, 55)

Asymmetric Unit (55, 55)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:47 , GLU A:50 , GLU A:79 , ASP A:82 , HOH A:2127 , HOH A:2128BINDING SITE FOR RESIDUE MN A 1145
02AC2SOFTWAREARG A:19 , ARG A:38 , HOH A:2129 , HOH A:2130 , HOH A:2131BINDING SITE FOR RESIDUE SO4 A 1146
03AC3SOFTWAREARG A:118 , LYS A:122BINDING SITE FOR RESIDUE SO4 A 1147
04AC4SOFTWARESER A:69 , GLY A:71 , GLY E:128BINDING SITE FOR RESIDUE SO4 A 1148
05AC5SOFTWAREARG A:135 , GOL A:1150 , PRO B:75 , PRO C:131BINDING SITE FOR RESIDUE GOL A 1149
06AC6SOFTWAREALA A:132 , ASP A:133 , VAL A:134 , ARG A:135 , GOL A:1149 , HIS B:78BINDING SITE FOR RESIDUE GOL A 1150
07AC7SOFTWAREPRO A:-2 , GLU A:47 , ASP A:82 , HOH A:2132 , VAL B:105 , ASN B:109BINDING SITE FOR RESIDUE GOL A 1151
08AC8SOFTWAREGLU A:27 , ASP A:97 , HOH A:2133BINDING SITE FOR RESIDUE GOL A 1152
09AC9SOFTWAREGLU B:47 , GLU B:50 , GLU B:79 , ASP B:82 , HOH B:2099 , HOH B:2100BINDING SITE FOR RESIDUE MN B 1148
10BC1SOFTWAREGLU B:27 , HOH B:2101 , HOH B:2102 , HOH B:2103 , HOH B:2104 , HOH B:2105BINDING SITE FOR RESIDUE MN B 1149
11BC2SOFTWAREARG B:38 , HOH B:2106 , HOH B:2107 , HOH B:2108 , ARG C:19BINDING SITE FOR RESIDUE SO4 B 1150
12BC3SOFTWAREHOH A:2126 , SER B:69 , GLY B:71 , HOH B:2109 , GLY C:128 , ARG C:130BINDING SITE FOR RESIDUE SO4 B 1151
13BC4SOFTWAREARG B:118 , LYS B:122BINDING SITE FOR RESIDUE SO4 B 1152
14BC5SOFTWAREASP A:45 , SER A:48 , ALA A:49 , ARG A:52 , ASP B:45 , SER B:48 , ALA B:49 , ARG B:52 , HOH B:2110BINDING SITE FOR RESIDUE GOL B 1153
15BC6SOFTWAREALA A:74 , HIS A:78 , ALA B:132 , VAL B:134 , ARG B:135BINDING SITE FOR RESIDUE GOL B 1154
16BC7SOFTWAREPRO B:26 , GLU B:27 , ARG B:28BINDING SITE FOR RESIDUE GOL B 1155
17BC8SOFTWAREHOH A:2094 , ARG B:13 , GLU B:16 , HOH B:2112BINDING SITE FOR RESIDUE GOL B 1156
18BC9SOFTWAREPRO B:33 , PRO B:34 , HOH B:2113BINDING SITE FOR RESIDUE GOL B 1157
19CC1SOFTWAREHOH F:2095 , HOH F:2096 , HOH F:2097 , HOH F:2098 , HOH F:2099 , HOH F:2100BINDING SITE FOR RESIDUE MN C 1148
20CC2SOFTWAREGLU C:47 , GLU C:50 , GLU C:79 , ASP C:82 , HOH C:2150 , HOH C:2151BINDING SITE FOR RESIDUE MN C 1149
21CC3SOFTWARESER C:69 , GLY C:71 , HOH C:2152 , HOH C:2154 , GLU F:127 , GLY F:128BINDING SITE FOR RESIDUE SO4 C 1150
22CC4SOFTWAREARG C:38 , HOH C:2155 , HOH C:2156 , HOH D:2079 , ARG E:19BINDING SITE FOR RESIDUE SO4 C 1151
23CC5SOFTWAREARG A:19BINDING SITE FOR RESIDUE SO4 C 1152
24CC6SOFTWAREGLU C:47 , ASP C:82 , TYR C:85 , HOH C:2158 , VAL D:105 , ASN D:109 , PRO E:-2BINDING SITE FOR RESIDUE GOL C 1153
25CC7SOFTWAREVAL A:105 , ASN A:109 , GLU B:47 , ASP B:82 , PRO C:-2BINDING SITE FOR RESIDUE GOL C 1154
26CC8SOFTWAREASP C:45 , SER C:48 , ALA C:49 , ARG C:52 , HOH C:2077 , HOH C:2159 , SER D:48 , ARG D:52 , GOL D:1154 , HOH D:2150BINDING SITE FOR RESIDUE GOL C 1155
27CC9SOFTWAREPRO C:26 , GLU C:27 , HOH C:2160BINDING SITE FOR RESIDUE GOL C 1156
28DC1SOFTWAREARG C:118 , LYS C:122 , HOH C:2161BINDING SITE FOR RESIDUE GOL C 1157
29DC2SOFTWAREARG C:107 , SER C:111 , TRP C:129 , ARG C:130BINDING SITE FOR RESIDUE GOL C 1158
30DC3SOFTWAREHIS C:57 , HOH C:2162 , ARG F:118 , LYS F:122BINDING SITE FOR RESIDUE GOL C 1159
31DC4SOFTWARETRP A:129 , ARG C:135 , HOH C:2163 , HOH C:2164BINDING SITE FOR RESIDUE GOL C 1160
32DC5SOFTWAREGLU D:47 , GLU D:50 , GLU D:79 , ASP D:82 , HOH F:2093 , HOH F:2094BINDING SITE FOR RESIDUE MN D 1148
33DC6SOFTWAREHOH D:2139 , HOH D:2140 , HOH D:2141 , HOH D:2142 , HOH D:2143 , HOH D:2144BINDING SITE FOR RESIDUE MN D 1149
34DC7SOFTWARELYS D:112 , LYS D:125 , HOH D:2155BINDING SITE FOR RESIDUE SO4 D 1150
35DC8SOFTWAREARG D:19 , HOH D:2146BINDING SITE FOR RESIDUE SO4 D 1151
36DC9SOFTWAREGLN C:142 , SER D:69 , ALA D:70 , GLY D:71 , HOH D:2147BINDING SITE FOR RESIDUE GOL D 1152
37EC1SOFTWAREPRO B:-2 , VAL C:105 , ASN C:109 , GLU D:47 , ASP D:82 , HOH D:2148BINDING SITE FOR RESIDUE GOL D 1153
38EC2SOFTWAREGOL C:1155 , ASP D:45 , HOH D:2061 , HOH D:2149 , HOH D:2150 , HOH D:2151BINDING SITE FOR RESIDUE GOL D 1154
39EC3SOFTWAREGLN D:123 , LEU D:124 , LYS D:125 , HOH D:2152 , HOH D:2153 , HOH D:2154 , HOH D:2155 , ARG E:61 , HOH E:2071BINDING SITE FOR RESIDUE GOL D 1155
40EC4SOFTWAREARG D:117 , HOH D:2121 , ALA E:113 , ARG E:117 , GLN E:123 , ALA F:20 , ILE F:21BINDING SITE FOR RESIDUE GOL D 1156
41EC5SOFTWAREARG D:118 , LYS D:122BINDING SITE FOR RESIDUE GOL D 1157
42EC6SOFTWAREHOH F:2101 , HOH F:2102 , HOH F:2103 , HOH F:2104 , HOH F:2105 , HOH F:2106BINDING SITE FOR RESIDUE MN E 1148
43EC7SOFTWAREGLU E:47 , GLU E:50 , GLU E:79 , ASP E:82 , HOH E:2116 , HOH E:2117BINDING SITE FOR RESIDUE MN E 1149
44EC8SOFTWAREGLU D:127 , GLY D:128 , HOH D:2125 , SER E:69 , GLY E:71BINDING SITE FOR RESIDUE SO4 E 1150
45EC9SOFTWAREARG D:19 , ARG E:38 , HOH E:2118 , HOH E:2119 , HOH E:2120BINDING SITE FOR RESIDUE SO4 E 1151
46FC1SOFTWAREHIS E:15 , ARG E:19 , HOH E:2115 , HOH E:2121 , HOH E:2122 , HOH E:2123BINDING SITE FOR RESIDUE GOL E 1152
47FC2SOFTWAREHIS A:57 , ARG E:118 , LYS E:122BINDING SITE FOR RESIDUE GOL E 1153
48FC3SOFTWAREARG E:38 , GLN E:41 , THR E:42 , ASP E:45 , HOH E:2124 , HOH E:2125BINDING SITE FOR RESIDUE GOL E 1154
49FC4SOFTWAREHOH F:2107 , HOH F:2108 , HOH F:2109BINDING SITE FOR RESIDUE MN F 1147
50FC5SOFTWAREGLU F:47 , GLU F:50 , GLU F:79 , ASP F:82 , HOH F:2089 , HOH F:2090BINDING SITE FOR RESIDUE MN F 1148
51FC6SOFTWARELYS F:112 , LYS F:122 , LYS F:125 , HOH F:2070 , HOH F:2091BINDING SITE FOR RESIDUE SO4 F 1149
52FC7SOFTWARESER F:69 , GLY F:71BINDING SITE FOR RESIDUE GOL F 1150
53FC8SOFTWAREPRO A:116 , ARG A:117 , ALA D:64 , ALA E:20 , ILE E:21 , ALA F:113 , GLY F:115 , ARG F:117 , GLN F:123 , HOH F:2092BINDING SITE FOR RESIDUE GOL F 1151
54FC9SOFTWARESER E:48 , ARG E:52 , ASP F:45 , SER F:48 , ALA F:49 , ARG F:52BINDING SITE FOR RESIDUE GOL F 1152
55GC1SOFTWAREVAL E:105 , ASN E:109 , PRO F:-2 , GLU F:47 , ASP F:82BINDING SITE FOR RESIDUE GOL F 1153

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1C:6 -D:6

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2YF3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2YF3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2YF3)

(-) Exons   (0, 0)

(no "Exon" information available for 2YF3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:150
 aligned with Q9RS96_DEIRA | Q9RS96 from UniProtKB/TrEMBL  Length:148

    Alignment length:150
                                  1                                                                                                                                               
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144
         Q9RS96_DEIRA     - ------MSDLPCPPTNAERLHEFHRAIGAATPERPTPPPPELLRLRQTLLDEESAEVRAEIDHLLARQAAGEALSAGDLAPLAHELADLLYVTYGALDQLGIDADAVFAEVHRANLSKASGPRRADGKQLKPEGWRPADVRGVIERLQHA 144
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh..................hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2yf3 A  -5 GIDPFTMSDLPCPPTNAERLHEFHRAIGAATPERPTPPPPELLRLRQTLLDEESAEVRAEIDHLLARQAAGEALSAGDLAPLAHELADLLYVTYGALDQLGIDADAVFAEVHRANLSKASGPRRADGKQLKPEGWRPADVRGVIERLQHA 144
                                     4        14        24        34        44        54        64        74        84        94       104       114       124       134       144


Chain B from PDB  Type:PROTEIN  Length:149
 aligned with Q9RS96_DEIRA | Q9RS96 from UniProtKB/TrEMBL  Length:148

    Alignment length:149
                             2  3                                                                                                                                                
                             |  |    8        18        28        38        48        58        68        78        88        98       108       118       128       138         
         Q9RS96_DEIRA     1 MS--DLPCPPTNAERLHEFHRAIGAATPERPTPPPPELLRLRQTLLDEESAEVRAEIDHLLARQAAGEALSAGDLAPLAHELADLLYVTYGALDQLGIDADAVFAEVHRANLSKASGPRRADGKQLKPEGWRPADVRGVIERLQHAPAD 147
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh..................hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yf3 B  -4 IDPFTMPCPPTNAERLHEFHRAIGAATPERPTPPPPELLRLRQTLLDEESAEVRAEIDHLLARQAAGEALSAGDLAPLAHELADLLYVTYGALDQLGIDADAVFAEVHRANLSKASGPRRADGKQLKPEGWRPADVRGVIERLQHAPAD 147
                                 ||  8        18        28        38        48        58        68        78        88        98       108       118       128       138         
                                 1|                                                                                                                                              
                                  5                                                                                                                                              


Chain C from PDB  Type:PROTEIN  Length:153
 aligned with Q9RS96_DEIRA | Q9RS96 from UniProtKB/TrEMBL  Length:148

    Alignment length:153
                                 1                                                                                                                                                   
                                 |   5        15        25        35        45        55        65        75        85        95       105       115       125       135       145   
         Q9RS96_DEIRA     - -----MSDLPCPPTNAERLHEFHRAIGAATPERPTPPPPELLRLRQTLLDEESAEVRAEIDHLLARQAAGEALSAGDLAPLAHELADLLYVTYGALDQLGIDADAVFAEVHRANLSKASGPRRADGKQLKPEGWRPADVRGVIERLQHAPADD 148
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh..................hhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yf3 C  -4 IDPFTMSDLPCPPTNAERLHEFHRAIGAATPERPTPPPPELLRLRQTLLDEESAEVRAEIDHLLARQAAGEALSAGDLAPLAHELADLLYVTYGALDQLGIDADAVFAEVHRANLSKASGPRRADGKQLKPEGWRPADVRGVIERLQHAPADD 148
                                     5        15        25        35        45        55        65        75        85        95       105       115       125       135       145   


Chain D from PDB  Type:PROTEIN  Length:153
 aligned with Q9RS96_DEIRA | Q9RS96 from UniProtKB/TrEMBL  Length:148

    Alignment length:153
                                  1                                                                                                                                                  
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144   
         Q9RS96_DEIRA     - ------MSDLPCPPTNAERLHEFHRAIGAATPERPTPPPPELLRLRQTLLDEESAEVRAEIDHLLARQAAGEALSAGDLAPLAHELADLLYVTYGALDQLGIDADAVFAEVHRANLSKASGPRRADGKQLKPEGWRPADVRGVIERLQHAPAD 147
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhh.....hhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh..................hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yf3 D  -5 GIDPFTMSDLPCPPTNAERLHEFHRAIGAATPERPTPPPPELLRLRQTLLDEESAEVRAEIDHLLARQAAGEALSAGDLAPLAHELADLLYVTYGALDQLGIDADAVFAEVHRANLSKASGPRRADGKQLKPEGWRPADVRGVIERLQHAPAD 147
                                     4        14        24        34        44        54        64        74        84        94       104       114       124       134       144   


Chain E from PDB  Type:PROTEIN  Length:153
 aligned with Q9RS96_DEIRA | Q9RS96 from UniProtKB/TrEMBL  Length:148

    Alignment length:153
                                 1                                                                                                                                                   
                                 |   5        15        25        35        45        55        65        75        85        95       105       115       125       135       145   
         Q9RS96_DEIRA     - -----MSDLPCPPTNAERLHEFHRAIGAATPERPTPPPPELLRLRQTLLDEESAEVRAEIDHLLARQAAGEALSAGDLAPLAHELADLLYVTYGALDQLGIDADAVFAEVHRANLSKASGPRRADGKQLKPEGWRPADVRGVIERLQHAPADD 148
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...................hhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yf3 E  -4 IDPFTMSDLPCPPTNAERLHEFHRAIGAATPERPTPPPPELLRLRQTLLDEESAEVRAEIDHLLARQAAGEALSAGDLAPLAHELADLLYVTYGALDQLGIDADAVFAEVHRANLSKASGPRRADGKQLKPEGWRPADVRGVIERLQHAPADD 148
                                     5        15        25        35        45        55        65        75        85        95       105       115       125       135       145   


Chain F from PDB  Type:PROTEIN  Length:148
 aligned with Q9RS96_DEIRA | Q9RS96 from UniProtKB/TrEMBL  Length:148

    Alignment length:148
                             1                                                                                                                                                  
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139        
         Q9RS96_DEIRA     - -MSDLPCPPTNAERLHEFHRAIGAATPERPTPPPPELLRLRQTLLDEESAEVRAEIDHLLARQAAGEALSAGDLAPLAHELADLLYVTYGALDQLGIDADAVFAEVHRANLSKASGPRRADGKQLKPEGWRPADVRGVIERLQHAPAD 147
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --------------PRA-PH-2yf3F01 F:14-109                                                                         -------------------------------------- Pfam domains (1)
           Pfam domains (2) --------------PRA-PH-2yf3F02 F:14-109                                                                         -------------------------------------- Pfam domains (2)
           Pfam domains (3) --------------PRA-PH-2yf3F03 F:14-109                                                                         -------------------------------------- Pfam domains (3)
           Pfam domains (4) --------------PRA-PH-2yf3F04 F:14-109                                                                         -------------------------------------- Pfam domains (4)
           Pfam domains (5) --------------PRA-PH-2yf3F05 F:14-109                                                                         -------------------------------------- Pfam domains (5)
           Pfam domains (6) --------------PRA-PH-2yf3F06 F:14-109                                                                         -------------------------------------- Pfam domains (6)
         Sec.struct. author .........hhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh..................hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yf3 F  -3 DPFTMPCPPTNAERLHEFHRAIGAATPERPTPPPPELLRLRQTLLDEESAEVRAEIDHLLARQAAGEALSAGDLAPLAHELADLLYVTYGALDQLGIDADAVFAEVHRANLSKASGPRRADGKQLKPEGWRPADVRGVIERLQHAPAD 147
                                ||   9        19        29        39        49        59        69        79        89        99       109       119       129       139        
                                1|                                                                                                                                              
                                 5
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2YF3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2YF3)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: MazG (25)
(-)
Family: PRA-PH (10)
(-)
Deinococcus radiodurans (6)
1aPRA-PH-2yf3F01F:14-109
1bPRA-PH-2yf3F02F:14-109
1cPRA-PH-2yf3F03F:14-109
1dPRA-PH-2yf3F04F:14-109
1ePRA-PH-2yf3F05F:14-109
1fPRA-PH-2yf3F06F:14-109

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q9RS96_DEIRA | Q9RS96)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0047429    nucleoside-triphosphate diphosphatase activity    Catalysis of the reaction: H2O + a nucleoside triphosphate = diphosphate + a nucleotide.

 Visualization

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  2yf3
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  Q9RS96_DEIRA | Q9RS96
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9RS96_DEIRA | Q9RS96: 2yeu 2yf4 2yf9 2yfc 2yfd 5hva 5hwu 5hx1 5hyl 5hzz 5i0j 5i0m

(-) Related Entries Specified in the PDB File

2yeu STRUCTURAL AND FUNCTIONAL INSIGHTS OF DR2231 PROTEIN, THE MAZG-LIKE NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE FROM DEINOCOCCUS RADIODURANS, COMPLEX WITH GD
2yf4 CRYSTAL STRUCTURE OF DR2231, THE MAZG-LIKE PROTEIN FROM DEINOCOCCUS RADIODURANS, APO STRUCTURE
2yf9 STRUCTURAL AND FUNCTIONAL INSIGHTS OF DR2231 PROTEIN, THE MAZG-LIKE NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE FROM DEINOCOCCUS RADIODURANS, NATIVE FORM
2yfc STRUCTURAL AND FUNCTIONAL INSIGHTS OF DR2231 PROTEIN, THE MAZG-LIKE NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE FROM DEINOCOCCUS RADIODURANS, COMPLEXED WITH MN AND DUMP
2yfd STRUCTURAL AND FUNCTIONAL INSIGHTS OF DR2231 PROTEIN, THE MAZG-LIKE NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE FROM DEINOCOCCUS RADIODURANS, COMPLEXED WITH MG AND DUMP