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(-) Description

Title :  CRYSTAL STRUCTURE OF BOVINE F1-C8 SUB-COMPLEX OF ATP SYNTHASE
 
Authors :  I. N. Watt, M. G. Montgomery, M. J. Runswick, A. G. W. Leslie, J. E. Walker
Date :  02 Aug 10  (Deposition) - 15 Sep 10  (Release) - 16 Nov 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.50
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q
Keywords :  Atp Phosphorylase (H+ Transporting), Atp Synthesis, F1Fo Atp Synthase, Hydrolase, Ion Transport, P-Loop (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  I. N. Watt, M. G. Montgomery, M. J. Runswick, A. G. W. Leslie, J. E. Walker
Bioenergetic Cost Of Making An Adenosine Triphosphate Molecule In Animal Mitochondria.
Proc. Natl. Acad. Sci. Usa V. 107 16823 2010
PubMed-ID: 20847295  |  Reference-DOI: 10.1073/PNAS.1011099107

(-) Compounds

Molecule 1 - ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL
    ChainsA, B, C
    EC Number3.6.3.14
    FragmentRESIDUES 62-553
    OrganHEART
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    TissueMUSCLE
 
Molecule 2 - ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL
    ChainsD, E, F
    EC Number3.6.3.14
    FragmentRESIDUES 59-525
    OrganHEART
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    TissueMUSCLE
 
Molecule 3 - ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL
    ChainsG
    EC Number3.6.3.14
    FragmentRESIDUES 26-297
    OrganHEART
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymF-ATPASE GAMMA SUBUNIT
    TissueMUSCLE
 
Molecule 4 - ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL
    ChainsH
    EC Number3.6.3.14
    FragmentRESIDUES 37-167
    OrganHEART
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymF-ATPASE DELTA SUBUNIT
    TissueMUSCLE
 
Molecule 5 - ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL
    ChainsI
    EC Number3.6.3.14
    FragmentRESIDUES 2-48
    OrganHEART
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymATPASE SUBUNIT EPSILON
    TissueMUSCLE
 
Molecule 6 - ATP SYNTHASE LIPID-BINDING PROTEIN, MITOCHONDRIAL
    ChainsJ, K, L, M, N, O, P, Q
    EC Number3.6.3.14
    FragmentRESIDUES 63-134
    OrganHEART
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymATP SYNTHASE PROTEOLIPID P1, ATPASE PROTEIN 9, ATPASE SUBUNIT C
    TissueMUSCLE

 Structural Features

(-) Chains, Units

  1234567891011121314151617
Asymmetric/Biological Unit ABCDEFGHIJKLMNOPQ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 12)

Asymmetric/Biological Unit (4, 12)
No.NameCountTypeFull Name
1ANP5Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2GOL1Ligand/IonGLYCEROL
3MG5Ligand/IonMAGNESIUM ION
4SO41Ligand/IonSULFATE ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:171 , GLN A:172 , THR A:173 , GLY A:174 , LYS A:175 , THR A:176 , SER A:177 , PHE A:357 , ARG A:362 , PRO A:363 , GLN A:430 , GLN A:432 , MG A:601BINDING SITE FOR RESIDUE ANP A 600
02AC2SOFTWARETHR A:176 , ASP A:269 , ANP A:600BINDING SITE FOR RESIDUE MG A 601
03AC3SOFTWAREARG B:171 , GLN B:172 , THR B:173 , GLY B:174 , LYS B:175 , THR B:176 , SER B:177 , PHE B:357 , ARG B:362 , GLN B:430 , GLN B:432 , MG B:601 , ARG E:356 , ASP E:359BINDING SITE FOR RESIDUE ANP B 600
04AC4SOFTWARETHR B:176 , ANP B:600BINDING SITE FOR RESIDUE MG B 601
05AC5SOFTWAREMET B:62 , VAL B:129 , TYR B:244 , TYR B:248 , ARG B:304BINDING SITE FOR RESIDUE GOL B 701
06AC6SOFTWAREARG C:171 , GLN C:172 , GLY C:174 , LYS C:175 , THR C:176 , SER C:177 , GLU C:328 , PHE C:357 , ARG C:362 , GLN C:430 , GLN C:432 , MG C:601 , TYR F:368BINDING SITE FOR RESIDUE ANP C 600
07AC7SOFTWARETHR C:176 , ASP C:269 , ANP C:600BINDING SITE FOR RESIDUE MG C 601
08AC8SOFTWARESER C:344 , SER C:372 , ARG C:373 , GLY D:157 , ALA D:158 , GLY D:159 , VAL D:160 , GLY D:161 , LYS D:162 , THR D:163 , VAL D:164 , GLU D:188 , ARG D:189 , TYR D:311 , TYR D:345 , ALA D:421 , PHE D:424 , THR D:425 , MG D:601BINDING SITE FOR RESIDUE ANP D 600
09AC9SOFTWARETHR D:163 , GLU D:188 , ASP D:256 , ANP D:600BINDING SITE FOR RESIDUE MG D 601
10BC1SOFTWAREARG A:373 , LYS E:162 , ARG E:189 , ASP E:256 , ARG E:260BINDING SITE FOR RESIDUE SO4 E 630
11BC2SOFTWAREILE B:343 , SER B:344 , ARG B:373 , GLY F:157 , ALA F:158 , GLY F:159 , VAL F:160 , GLY F:161 , LYS F:162 , THR F:163 , VAL F:164 , GLU F:188 , ARG F:189 , TYR F:345 , PHE F:418 , ALA F:421 , PHE F:424 , THR F:425 , MG F:601BINDING SITE FOR RESIDUE ANP F 600
12BC3SOFTWARETHR F:163 , GLU F:188 , ARG F:189 , GLU F:192 , ANP F:600BINDING SITE FOR RESIDUE MG F 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2XND)

(-) Cis Peptide Bonds  (20, 20)

Asymmetric/Biological Unit
No.Residues
1Asp A:269 -Asp A:270
2Arg A:362 -Pro A:363
3Asp B:269 -Asp B:270
4Arg B:362 -Pro B:363
5Asp C:269 -Asp C:270
6Arg C:362 -Pro C:363
7Asp D:256 -Asn D:257
8Tyr D:345 -Pro D:346
9Asp E:256 -Asn E:257
10Tyr E:345 -Pro E:346
11Asp F:256 -Asn F:257
12Tyr F:345 -Pro F:346
13Asn J:39 -Pro J:40
14Asn K:39 -Pro K:40
15Asn L:39 -Pro L:40
16Asn M:39 -Pro M:40
17Asn N:39 -Pro N:40
18Asn O:39 -Pro O:40
19Asn P:39 -Pro P:40
20Asn Q:39 -Pro Q:40

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2XND)

(-) PROSITE Motifs  (3, 15)

Asymmetric/Biological Unit (3, 15)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ATPASE_CPS00605 ATP synthase c subunit signature.AT5G1_BOVIN98-119
 
 
 
 
 
 
 
  8J:37-58
K:37-58
L:37-58
M:37-58
N:37-58
O:37-58
P:37-58
Q:37-58
2ATPASE_GAMMAPS00153 ATP synthase gamma subunit signature.ATPG_BOVIN283-296  1G:258-271
3ATPASE_ALPHA_BETAPS00152 ATP synthase alpha and beta subunits signature.ATPB_BOVIN396-405
 
 
  3D:346-355
E:346-355
F:346-355
ATPA_BOVIN406-415
 
 
  3A:363-372
B:363-372
C:363-372

(-) Exons   (22, 40)

Asymmetric/Biological Unit (22, 40)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSBTAT000000007211ENSBTAE00000005335chr7:42707782-42707968187ATPD_BOVIN1-48481H:15-2612
1.2ENSBTAT000000007212ENSBTAE00000005337chr7:42708593-42708746154ATPD_BOVIN49-100521H:27-7852
1.3ENSBTAT000000007213ENSBTAE00000005339chr7:42709233-4270932189ATPD_BOVIN100-129301H:78-10730
1.4ENSBTAT000000007214ENSBTAE00000278497chr7:42709412-42709954543ATPD_BOVIN130-169401H:108-14538

2.1ENSBTAT000000177101ENSBTAE00000144098chr5:61355655-61355808154ATPB_BOVIN1-52520--
2.2ENSBTAT000000177102ENSBTAE00000144099chr5:61356274-61356456183ATPB_BOVIN52-113623D:9-63
E:9-63
F:9-63
55
55
55
2.3ENSBTAT000000177103ENSBTAE00000144101chr5:61356699-61356873175ATPB_BOVIN113-171593D:63-121
E:63-121
F:63-121
59
59
59
2.4ENSBTAT000000177104ENSBTAE00000144103chr5:61357390-61357511122ATPB_BOVIN171-212423D:121-162
E:121-162
F:121-162
42
42
42
2.5ENSBTAT000000177105ENSBTAE00000144107chr5:61357757-61357941185ATPB_BOVIN212-273623D:162-223
E:162-223
F:162-223
62
62
62
2.6ENSBTAT000000177106ENSBTAE00000144109chr5:61358444-61358602159ATPB_BOVIN274-326533D:224-276
E:224-276
F:224-276
53
53
53
2.7ENSBTAT000000177107ENSBTAE00000144110chr5:61358693-61358815123ATPB_BOVIN327-367413D:277-317
E:277-317
F:277-317
41
41
41
2.8ENSBTAT000000177108ENSBTAE00000144111chr5:61359431-61359643213ATPB_BOVIN368-438713D:318-388
E:318-388
F:318-388
71
71
71
2.9ENSBTAT000000177109ENSBTAE00000144114chr5:61360024-61360225202ATPB_BOVIN439-506683D:389-456
E:389-456
F:389-456
68
68
68
2.10ENSBTAT0000001771010ENSBTAE00000297207chr5:61360774-61361036263ATPB_BOVIN506-537323D:456-475
E:456-474
F:456-474
20
19
19

3.1ENSBTAT000000185051ENSBTAE00000150694chr13:14893326-1489324087ATPG_BOVIN1-19190--
3.2ENSBTAT000000185052ENSBTAE00000150697chr13:14886562-1488652835ATPG_BOVIN19-31131G:1-66
3.3ENSBTAT000000185053ENSBTAE00000150700chr13:14886029-14885898132ATPG_BOVIN31-75451G:6-5045
3.4ENSBTAT000000185054ENSBTAE00000150704chr13:14882864-14882660205ATPG_BOVIN75-143691G:50-118 (gaps)69
3.5ENSBTAT000000185055ENSBTAE00000150705chr13:14882083-14881940144ATPG_BOVIN143-191491G:118-16649
3.6ENSBTAT000000185056ENSBTAE00000150706chr13:14881819-1488175565ATPG_BOVIN191-213231G:166-18823
3.7ENSBTAT000000185057ENSBTAE00000150707chr13:14880753-14880598156ATPG_BOVIN213-265531G:188-24053
3.8ENSBTAT000000185058ENSBTAE00000150708chr13:14880202-1488010697ATPG_BOVIN265-297331G:240-27233
3.9ENSBTAT000000185059ENSBTAE00000305670chr13:14877783-1487774737ATPG_BOVIN297-29821G:272-2721
3.10ENSBTAT0000001850510ENSBTAE00000305668chr13:14877118-14876979140ATPG_BOVIN-00--

4.1ENSBTAT000000353371ENSBTAE00000417791chr22:35979709-35980100392ATP5E_BOVIN1-77771I:1-4747

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:492
 aligned with ATPA_BOVIN | P19483 from UniProtKB/Swiss-Prot  Length:553

    Alignment length:492
                                    71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551  
           ATPA_BOVIN    62 ADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLSKIRTDGKISEESDAKLKEIVTNFLAGFEA 553
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains -----2xndA01 A:24-93  [code=2.40.30.20, no name defined]                   2xndA02 A:94-379 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                                         2xndA03 A:380-510  [code=1.20.150.20, no name defined]                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........eeeeeeee................eee.....eeeeeee....................eee......eee.hhhhh..eee................eee.....................hhhhhhhh.......eeeee....hhhhhhhhhhhhhhhhhhh.......eeeeeeeeehhhhhhhhhhhhhh..hhh.eeeeeee...hhhhhhhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh.....hhhhh..eeeeeeeee.......hhhhhhhhhhh.eeeeehhhhhhhh..........ee.hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2xnd A  19 ADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGFEA 510
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508  

Chain B from PDB  Type:PROTEIN  Length:492
 aligned with ATPA_BOVIN | P19483 from UniProtKB/Swiss-Prot  Length:553

    Alignment length:492
                                    71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551  
           ATPA_BOVIN    62 ADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLSKIRTDGKISEESDAKLKEIVTNFLAGFEA 553
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains -----2xndB01 B:24-93  [code=2.40.30.20, no name defined]                   2xndB02 B:94-379 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                                         2xndB03 B:380-510  [code=1.20.150.20, no name defined]                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..............eee..eeee.........eeee.....eeeeeee....eeeee..hhhhh......eeeeee.eeee.......ee................eeee.....................hhhhhhhh........eeeee...hhhhhhhhhhhhhhhhhh........eeeeeee..hhhhhhhhhhhhhh..hhh.eeeeee....hhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhhhh....hhhhh..hhhhhhhhhhh.....hhhhh..eeeeeeeeee......hhhhhhhhh...eeeeehhhhhh............ee.hhhhhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhh.........hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2xnd B  19 ADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGFEA 510
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508  

Chain C from PDB  Type:PROTEIN  Length:492
 aligned with ATPA_BOVIN | P19483 from UniProtKB/Swiss-Prot  Length:553

    Alignment length:492
                                    71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551  
           ATPA_BOVIN    62 ADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLSKIRTDGKISEESDAKLKEIVTNFLAGFEA 553
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains -----2xndC01 C:24-93  [code=2.40.30.20, no name defined]                   2xndC02 C:94-379 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                                         2xndC03 C:380-510  [code=1.20.150.20, no name defined]                                                                              CATH domains
           Pfam domains (1) -----ATP-synt_ab_N-2xndC01 C:24-92                                        -------------------------------------------------------ATP-synt_ab-2xndC04 C:148-372                                                                                                                                                                                                    -----------ATP-synt_ab_C-2xndC07 C:384-488                                                                          ---------------------- Pfam domains (1)
           Pfam domains (2) -----ATP-synt_ab_N-2xndC02 C:24-92                                        -------------------------------------------------------ATP-synt_ab-2xndC05 C:148-372                                                                                                                                                                                                    -----------ATP-synt_ab_C-2xndC08 C:384-488                                                                          ---------------------- Pfam domains (2)
           Pfam domains (3) -----ATP-synt_ab_N-2xndC03 C:24-92                                        -------------------------------------------------------ATP-synt_ab-2xndC06 C:148-372                                                                                                                                                                                                    -----------ATP-synt_ab_C-2xndC09 C:384-488                                                                          ---------------------- Pfam domains (3)
         Sec.struct. author .............................................................................eeeehhhhh..eee...............eeee.....................hhhhhhhh........eeee....hhhhhhhhhhhhhhhhhh.......eeeeeeee..hhhhhhhhhhhhhhh.hhh.eeeeee....hhhhhhhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhhhh....hhhhh..hhhhhhhhhhhhh...hhhhh..eeeeeeeee.......hhhhhhhhh...eeeeehhhhhhhh..........ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2xnd C  19 ADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGFEA 510
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508  

Chain D from PDB  Type:PROTEIN  Length:467
 aligned with ATPB_BOVIN | P00829 from UniProtKB/Swiss-Prot  Length:528

    Alignment length:467
                                    68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       
           ATPB_BOVIN    59 TTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLAE 525
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2xndD01 D:9-81  [code=2.40.10.170, no name defined]                      2xndD02 D:82-357 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                               2xndD03 D:358-475 Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee..eeeeee.........eeee.......eeeeeeeee..eeeeee...........eeee.....eeeehhhhh..ee................eeee......hhhh......ee...hhhhhhhh.ee...eeeeee....hhhhhhhhhhhhh......eeeeeee..hhhhhhhhhhhhhhh...........eeeeee....hhhhhhhhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhh...hhhhh..hhhhhhhhhhh.........eeeeeeee.hhhh..hhhhhhhhhhh.eeee.hhhhhhh...........ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhh......hhhhhh......hhhhhhhhhhhhhhh.....hhhhh....hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 2 (1) Exon 2.2  PDB: D:9-63 UniProt: 52-113 [INCOMPLETE]     ---------------------------------------------------------Exon 2.4  PDB: D:121-162 UniProt: 171-212 -------------------------------------------------------------Exon 2.6  PDB: D:224-276 UniProt: 274-326            Exon 2.7  PDB: D:277-317 UniProt: 327-367Exon 2.8  PDB: D:318-388 UniProt: 368-438                              -------------------------------------------------------------------Exon 2.10            Transcript 2 (1)
           Transcript 2 (2) ------------------------------------------------------Exon 2.3  PDB: D:63-121 UniProt: 113-171                   ----------------------------------------Exon 2.5  PDB: D:162-223 UniProt: 212-273                     ---------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 2.9  PDB: D:389-456 UniProt: 439-506                           ------------------- Transcript 2 (2)
                 2xnd D   9 TTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLAE 475
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       

Chain E from PDB  Type:PROTEIN  Length:466
 aligned with ATPB_BOVIN | P00829 from UniProtKB/Swiss-Prot  Length:528

    Alignment length:466
                                    68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518      
           ATPB_BOVIN    59 TTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA 524
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2xndE01 E:9-81  [code=2.40.10.170, no name defined]                      2xndE02 E:82-357 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                               2xndE03 E:358-474 Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee..eeeeee........eeeee.......eeeeeeeee..eeeeee...........eeeeeeee.eeeehhhhh..ee................eeee.....................hhhhhhhh......eeeee.....hhhhhhhhhhhhhhhhh...eeeeeeeehhhhhhhhhhhhhh............eeeeeee...hhhhhhhhhhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhhhhhhhh...hhhhh..hhhhhhhhhhh........eeeeeeee.hhhhh..hhhhhhhhh...eeee.hhhhhhhh....................hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..................hhhhhhhhhhhhhh......hhhhh.....hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP----------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 2 (1) Exon 2.2  PDB: E:9-63 UniProt: 52-113 [INCOMPLETE]     ---------------------------------------------------------Exon 2.4  PDB: E:121-162 UniProt: 171-212 -------------------------------------------------------------Exon 2.6  PDB: E:224-276 UniProt: 274-326            Exon 2.7  PDB: E:277-317 UniProt: 327-367Exon 2.8  PDB: E:318-388 UniProt: 368-438                              -------------------------------------------------------------------Exon 2.10           Transcript 2 (1)
           Transcript 2 (2) ------------------------------------------------------Exon 2.3  PDB: E:63-121 UniProt: 113-171                   ----------------------------------------Exon 2.5  PDB: E:162-223 UniProt: 212-273                     ---------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 2.9  PDB: E:389-456 UniProt: 439-506                           ------------------ Transcript 2 (2)
                 2xnd E   9 TTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA 474
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468      

Chain F from PDB  Type:PROTEIN  Length:466
 aligned with ATPB_BOVIN | P00829 from UniProtKB/Swiss-Prot  Length:528

    Alignment length:466
                                    68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518      
           ATPB_BOVIN    59 TTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA 524
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2xndF01 F:9-81  [code=2.40.10.170, no name defined]                      2xndF02 F:82-357 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                               2xndF03 F:358-474 Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3                          CATH domains
           Pfam domains (1) ----ATP-synt_ab_N-2xndF01 F:13-79                                      -------------------------------------------------------ATP-synt_ab-2xndF04 F:135-355                                                                                                                                                                                                ------------ATP-synt_ab_C-2xndF07 F:368-474                                                                             Pfam domains (1)
           Pfam domains (2) ----ATP-synt_ab_N-2xndF02 F:13-79                                      -------------------------------------------------------ATP-synt_ab-2xndF05 F:135-355                                                                                                                                                                                                ------------ATP-synt_ab_C-2xndF08 F:368-474                                                                             Pfam domains (2)
           Pfam domains (3) ----ATP-synt_ab_N-2xndF03 F:13-79                                      -------------------------------------------------------ATP-synt_ab-2xndF06 F:135-355                                                                                                                                                                                                ------------ATP-synt_ab_C-2xndF09 F:368-474                                                                             Pfam domains (3)
         Sec.struct. author ..........................................................................eee.hhhhh..ee.................eee......hhhh...........hhhhhhhh......eeeeee....hhhhhhhhhhhhhh......eeeeee...hhhhhhhhhhhhhhh..........eeeeee....hhhhhhhhhhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhhhhhhhh...hhhhh..hhhhhhhhhhh........eeeeeeeee.hhhh..hhhhhhhhhhh.eeee.hhhhhhh...........ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhh......hhhhhhhhhhhhhhh.....hhhhhh....hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP----------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 2 (1) Exon 2.2  PDB: F:9-63 UniProt: 52-113 [INCOMPLETE]     ---------------------------------------------------------Exon 2.4  PDB: F:121-162 UniProt: 171-212 -------------------------------------------------------------Exon 2.6  PDB: F:224-276 UniProt: 274-326            Exon 2.7  PDB: F:277-317 UniProt: 327-367Exon 2.8  PDB: F:318-388 UniProt: 368-438                              -------------------------------------------------------------------Exon 2.10           Transcript 2 (1)
           Transcript 2 (2) ------------------------------------------------------Exon 2.3  PDB: F:63-121 UniProt: 113-171                   ----------------------------------------Exon 2.5  PDB: F:162-223 UniProt: 212-273                     ---------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 2.9  PDB: F:389-456 UniProt: 439-506                           ------------------ Transcript 2 (2)
                 2xnd F   9 TTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA 474
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468      

Chain G from PDB  Type:PROTEIN  Length:263
 aligned with ATPG_BOVIN | P05631 from UniProtKB/Swiss-Prot  Length:298

    Alignment length:272
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295  
           ATPG_BOVIN    26 ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADIKTPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTISSAESMSIYDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 297
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2xndG01 G:1-25,G:232-272 2xndG02 G:26-231  [code=3.40.1380.10     , no name defined]                                                                                                                                                   2xndG01 G:1-25,G:232-272                  CATH domains
               Pfam domains ATP-synt-2xndG01 G:1-272                                                                                                                                                                                                                                                         Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........-----.eeee.........hhhhhhhhhhhhhhhh----....eeeehhhhhh.........eeeee........hhhhhhhhhhhhhhh......eeeeeeee.....eeeeeeee..........hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_GAMMA  - PROSITE
           Transcript 3 (1) 3.2   -------------------------------------------Exon 3.4  PDB: G:50-118 (gaps) UniProt: 75-143                       -----------------------------------------------Exon 3.6  PDB: G:166-18---------------------------------------------------Exon 3.8  PDB: G:240-272          Transcript 3 (1)
           Transcript 3 (2) -----Exon 3.3  PDB: G:6-50 UniProt: 31-75         -------------------------------------------------------------------Exon 3.5  PDB: G:118-166 UniProt: 143-191        ---------------------Exon 3.7  PDB: G:188-240 UniProt: 213-265            -------------------------------3 Transcript 3 (2)
                 2xnd G   1 ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADIKTPE-----LIIGVSSDRGLCGAIHSSVAKQMKSEAANL----KEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTISSAESMSIYDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 272
                                    10        20        30        40        50        60|     | 70        80        90     |   -|      110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270  
                                                                                       61    67                           96  101                                                                                                                                                                           

Chain H from PDB  Type:PROTEIN  Length:131
 aligned with ATPD_BOVIN | P05630 from UniProtKB/Swiss-Prot  Length:168

    Alignment length:131
                                    46        56        66        76        86        96       106       116       126       136       146       156       166 
           ATPD_BOVIN    37 QMSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEALVKAL 167
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -ATP-synt_DE_N-2xndH01 H:16-97                                                     ------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee....eeeeeee..eeee......eee........ee...eeeeee......eeeee..eeeee....eeeeee..eee......hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1    Exon 1.2  PDB: H:27-78 UniProt: 49-100              -----------------------------Exon 1.4  PDB: H:108-145 [INCOMPLETE]  Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------Exon 1.3  PDB: H:78-107       -------------------------------------- Transcript 1 (2)
                 2xnd H  15 QMSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEALVKAL 145
                                    24        34        44        54        64        74        84        94       104       114       124       134       144 

Chain I from PDB  Type:PROTEIN  Length:47
 aligned with ATP5E_BOVIN | P05632 from UniProtKB/Swiss-Prot  Length:51

    Alignment length:47
                                    11        21        31        41       
          ATP5E_BOVIN     2 VAYWRQAGLSYIRYSQICAKAVRDALKTEFKANAMKTSGSTIKIVKV  48
               SCOP domains ----------------------------------------------- SCOP domains
               CATH domains 2xndI00 I:1-47                                  CATH domains
               Pfam domains -ATP-synt_Eps-2xndI01 I:2-47                    Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhh.....hhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------- PROSITE
               Transcript 4 Exon 4.1  PDB: I:1-47 UniProt: 1-77             Transcript 4
                 2xnd I   1 VAYWRQAGLSYIRYSQICAKAVRDALKTEFKANAMKTSGSTIKIVKV  47
                                    10        20        30        40       

Chain J from PDB  Type:PROTEIN  Length:72
 aligned with AT5G1_BOVIN | P32876 from UniProtKB/Swiss-Prot  Length:136

    Alignment length:72
                                    72        82        92       102       112       122       132  
          AT5G1_BOVIN    63 IDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF 134
               SCOP domains ------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------ATPASE_C  PDB: J:37-58--------------- PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                 2xnd J   2 IDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF  73
                                    11        21        31        41        51        61        71  

Chain K from PDB  Type:PROTEIN  Length:72
 aligned with AT5G1_BOVIN | P32876 from UniProtKB/Swiss-Prot  Length:136

    Alignment length:72
                                    72        82        92       102       112       122       132  
          AT5G1_BOVIN    63 IDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF 134
               SCOP domains ------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhh.hhhhhh...hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------ATPASE_C  PDB: K:37-58--------------- PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                 2xnd K   2 IDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF  73
                                    11        21        31        41        51        61        71  

Chain L from PDB  Type:PROTEIN  Length:72
 aligned with AT5G1_BOVIN | P32876 from UniProtKB/Swiss-Prot  Length:136

    Alignment length:72
                                    72        82        92       102       112       122       132  
          AT5G1_BOVIN    63 IDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF 134
               SCOP domains ------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhhhhh.hhhhhhhhhhhhhh.....hhhhhhhhhhhh.....hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------ATPASE_C  PDB: L:37-58--------------- PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                 2xnd L   2 IDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF  73
                                    11        21        31        41        51        61        71  

Chain M from PDB  Type:PROTEIN  Length:72
 aligned with AT5G1_BOVIN | P32876 from UniProtKB/Swiss-Prot  Length:136

    Alignment length:72
                                    72        82        92       102       112       122       132  
          AT5G1_BOVIN    63 IDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF 134
               SCOP domains ------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhh.hhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------ATPASE_C  PDB: M:37-58--------------- PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                 2xnd M   2 IDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF  73
                                    11        21        31        41        51        61        71  

Chain N from PDB  Type:PROTEIN  Length:72
 aligned with AT5G1_BOVIN | P32876 from UniProtKB/Swiss-Prot  Length:136

    Alignment length:72
                                    72        82        92       102       112       122       132  
          AT5G1_BOVIN    63 IDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF 134
               SCOP domains ------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh.....hhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------ATPASE_C  PDB: N:37-58--------------- PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                 2xnd N   2 IDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF  73
                                    11        21        31        41        51        61        71  

Chain O from PDB  Type:PROTEIN  Length:72
 aligned with AT5G1_BOVIN | P32876 from UniProtKB/Swiss-Prot  Length:136

    Alignment length:72
                                    72        82        92       102       112       122       132  
          AT5G1_BOVIN    63 IDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF 134
               SCOP domains ------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhh..hhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------ATPASE_C  PDB: O:37-58--------------- PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                 2xnd O   2 IDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF  73
                                    11        21        31        41        51        61        71  

Chain P from PDB  Type:PROTEIN  Length:72
 aligned with AT5G1_BOVIN | P32876 from UniProtKB/Swiss-Prot  Length:136

    Alignment length:72
                                    72        82        92       102       112       122       132  
          AT5G1_BOVIN    63 IDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF 134
               SCOP domains ------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh....hhhhhhh.hhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------ATPASE_C  PDB: P:37-58--------------- PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                 2xnd P   2 IDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF  73
                                    11        21        31        41        51        61        71  

Chain Q from PDB  Type:PROTEIN  Length:72
 aligned with AT5G1_BOVIN | P32876 from UniProtKB/Swiss-Prot  Length:136

    Alignment length:72
                                    72        82        92       102       112       122       132  
          AT5G1_BOVIN    63 IDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF 134
               SCOP domains ------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
           Pfam domains (1) ----ATP-synt_C-2xndQ01 Q:6-73                                            Pfam domains (1)
           Pfam domains (2) ----ATP-synt_C-2xndQ02 Q:6-73                                            Pfam domains (2)
           Pfam domains (3) ----ATP-synt_C-2xndQ03 Q:6-73                                            Pfam domains (3)
           Pfam domains (4) ----ATP-synt_C-2xndQ04 Q:6-73                                            Pfam domains (4)
           Pfam domains (5) ----ATP-synt_C-2xndQ05 Q:6-73                                            Pfam domains (5)
           Pfam domains (6) ----ATP-synt_C-2xndQ06 Q:6-73                                            Pfam domains (6)
           Pfam domains (7) ----ATP-synt_C-2xndQ07 Q:6-73                                            Pfam domains (7)
           Pfam domains (8) ----ATP-synt_C-2xndQ08 Q:6-73                                            Pfam domains (8)
         Sec.struct. author ............hhhhh...hhhhhhhhhhh...................hhhhhh......hhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------ATPASE_C  PDB: Q:37-58--------------- PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                 2xnd Q   2 IDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF  73
                                    11        21        31        41        51        61        71  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2XND)

(-) CATH Domains  (8, 21)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (7, 29)

Asymmetric/Biological Unit

(-) Gene Ontology  (42, 116)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C   (ATPA_BOVIN | P19483)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016820    hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances    Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046933    proton-transporting ATP synthase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism.
    GO:0046961    proton-transporting ATPase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.
biological process
    GO:0006754    ATP biosynthetic process    The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0015991    ATP hydrolysis coupled proton transport    The transport of protons against an electrochemical gradient, using energy from ATP hydrolysis.
    GO:0046034    ATP metabolic process    The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0015986    ATP synthesis coupled proton transport    The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005753    mitochondrial proton-transporting ATP synthase complex    A proton-transporting ATP synthase complex found in the mitochondrial membrane.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0045261    proton-transporting ATP synthase complex, catalytic core F(1)    The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled.
    GO:0033178    proton-transporting two-sector ATPase complex, catalytic domain    A protein complex that forms part of a proton-transporting two-sector ATPase complex and catalyzes ATP hydrolysis or synthesis. The catalytic domain (F1, V1, or A1) comprises a hexameric catalytic core and a central stalk, and is peripherally associated with the membrane when the two-sector ATPase is assembled.

Chain D,E,F   (ATPB_BOVIN | P00829)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0042288    MHC class I protein binding    Interacting selectively and non-covalently with major histocompatibility complex class I molecules; a set of molecules displayed on cell surfaces that are responsible for lymphocyte recognition and antigen presentation.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016820    hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances    Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046933    proton-transporting ATP synthase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism.
    GO:0046961    proton-transporting ATPase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.
biological process
    GO:0006754    ATP biosynthetic process    The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0015991    ATP hydrolysis coupled proton transport    The transport of protons against an electrochemical gradient, using energy from ATP hydrolysis.
    GO:0046034    ATP metabolic process    The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0015986    ATP synthesis coupled proton transport    The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
    GO:0001525    angiogenesis    Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
    GO:0006933    negative regulation of cell adhesion involved in substrate-bound cell migration    The disassembly of adhesions at the front and rear of a migrating cell. At the leading edge, adhesion disassembly accompanies the formation of new protrusions; at the cell rear, it promotes tail retraction.
    GO:0001649    osteoblast differentiation    The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, a mesodermal or neural crest cell that gives rise to bone.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0051453    regulation of intracellular pH    Any process that modulates the internal pH of a cell, measured by the concentration of the hydrogen ion.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0031966    mitochondrial membrane    Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope.
    GO:0042645    mitochondrial nucleoid    The region of a mitochondrion to which the DNA is confined.
    GO:0005753    mitochondrial proton-transporting ATP synthase complex    A proton-transporting ATP synthase complex found in the mitochondrial membrane.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0043209    myelin sheath    An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0045261    proton-transporting ATP synthase complex, catalytic core F(1)    The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled.
    GO:0033178    proton-transporting two-sector ATPase complex, catalytic domain    A protein complex that forms part of a proton-transporting two-sector ATPase complex and catalyzes ATP hydrolysis or synthesis. The catalytic domain (F1, V1, or A1) comprises a hexameric catalytic core and a central stalk, and is peripherally associated with the membrane when the two-sector ATPase is assembled.

Chain G   (ATPG_BOVIN | P05631)
molecular function
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046933    proton-transporting ATP synthase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism.
    GO:0046961    proton-transporting ATPase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.
biological process
    GO:0006754    ATP biosynthetic process    The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0015986    ATP synthesis coupled proton transport    The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005753    mitochondrial proton-transporting ATP synthase complex    A proton-transporting ATP synthase complex found in the mitochondrial membrane.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0043209    myelin sheath    An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
    GO:0045261    proton-transporting ATP synthase complex, catalytic core F(1)    The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled.

Chain H   (ATPD_BOVIN | P05630)
molecular function
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0015078    hydrogen ion transmembrane transporter activity    Enables the transfer of hydrogen ions from one side of a membrane to the other.
    GO:0046933    proton-transporting ATP synthase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism.
    GO:0046961    proton-transporting ATPase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.
biological process
    GO:0006754    ATP biosynthetic process    The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0015986    ATP synthesis coupled proton transport    The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005740    mitochondrial envelope    The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005753    mitochondrial proton-transporting ATP synthase complex    A proton-transporting ATP synthase complex found in the mitochondrial membrane.
    GO:0000275    mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)    The catalytic sector of the mitochondrial hydrogen-transporting ATP synthase; it comprises the catalytic core and central stalk, and is peripherally associated with the mitochondrial inner membrane when the entire ATP synthase is assembled.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045259    proton-transporting ATP synthase complex    A proton-transporting two-sector ATPase complex that catalyzes the phosphorylation of ADP to ATP during oxidative phosphorylation. The complex comprises a membrane sector (F0) that carries out proton transport and a cytoplasmic compartment sector (F1) that catalyzes ATP synthesis by a rotational mechanism; the extramembrane sector (containing 3 a and 3 b subunits) is connected via the d-subunit to the membrane sector by several smaller subunits. Within this complex, the g and e subunits and the 9-12 c subunits rotate by consecutive 120 degree angles and perform parts of ATP synthesis. This movement is driven by the hydrogen ion electrochemical potential gradient.
    GO:0045261    proton-transporting ATP synthase complex, catalytic core F(1)    The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled.

Chain I   (ATP5E_BOVIN | P05632)
molecular function
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0046933    proton-transporting ATP synthase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism.
    GO:0046961    proton-transporting ATPase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.
biological process
    GO:0006754    ATP biosynthetic process    The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0015986    ATP synthesis coupled proton transport    The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005753    mitochondrial proton-transporting ATP synthase complex    A proton-transporting ATP synthase complex found in the mitochondrial membrane.
    GO:0000275    mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)    The catalytic sector of the mitochondrial hydrogen-transporting ATP synthase; it comprises the catalytic core and central stalk, and is peripherally associated with the mitochondrial inner membrane when the entire ATP synthase is assembled.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045261    proton-transporting ATP synthase complex, catalytic core F(1)    The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled.

Chain J,K,L,M,N,O,P,Q   (AT5G1_BOVIN | P32876)
molecular function
    GO:0015078    hydrogen ion transmembrane transporter activity    Enables the transfer of hydrogen ions from one side of a membrane to the other.
    GO:0008289    lipid binding    Interacting selectively and non-covalently with a lipid.
biological process
    GO:0015991    ATP hydrolysis coupled proton transport    The transport of protons against an electrochemical gradient, using energy from ATP hydrolysis.
    GO:0015986    ATP synthesis coupled proton transport    The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0031966    mitochondrial membrane    Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope.
    GO:0005753    mitochondrial proton-transporting ATP synthase complex    A proton-transporting ATP synthase complex found in the mitochondrial membrane.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045263    proton-transporting ATP synthase complex, coupling factor F(o)    All non-F1 subunits of a hydrogen-transporting ATP synthase, including integral and peripheral membrane proteins.
    GO:0033177    proton-transporting two-sector ATPase complex, proton-transporting domain    A protein complex that forms part of a proton-transporting two-sector ATPase complex and carries out proton transport across a membrane. The proton-transporting domain (F0, V0, or A0) includes integral and peripheral membrane proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AT5G1_BOVIN | P328765ara 5are 5arh 5ari 5fij 5fik 5fil
        ATP5E_BOVIN | P056321e79 1h8e 2ck3 2jdi 2v7q 2w6h 2w6i 2w6j 2wss 4asu 4yxw 5ara 5are 5arh 5ari 5fij 5fik 5fil
        ATPA_BOVIN | P194831bmf 1cow 1e1q 1e1r 1e79 1efr 1h8e 1h8h 1nbm 1ohh 1qo1 1w0j 1w0k 2ck3 2jdi 2jiz 2jj1 2jj2 2jmx 2v7q 2w6e 2w6f 2w6g 2w6h 2w6i 2w6j 2wss 4asu 4tsf 4tt3 4yxw 4z1m 5ara 5are 5arh 5ari 5fij 5fik 5fil
        ATPB_BOVIN | P008291bmf 1cow 1e1q 1e1r 1e79 1efr 1h8e 1h8h 1nbm 1ohh 1qo1 1w0j 1w0k 2ck3 2jdi 2jiz 2jj1 2jj2 2v7q 2w6e 2w6f 2w6g 2w6h 2w6i 2w6j 2wss 4asu 4tsf 4tt3 4yxw 4z1m 5ara 5are 5arh 5ari 5fij 5fik 5fil
        ATPD_BOVIN | P056301e79 1h8e 2ck3 2jdi 2v7q 2w6h 2w6i 2w6j 2wss 4asu 4yxw 5ara 5are 5arh 5ari 5fij 5fik 5fil
        ATPG_BOVIN | P056311bmf 1cow 1e1q 1e1r 1e79 1efr 1h8e 1h8h 1nbm 1ohh 1qo1 1w0j 1w0k 2ck3 2jdi 2jiz 2jj1 2jj2 2v7q 2w6e 2w6f 2w6g 2w6h 2w6i 2w6j 2wss 4asu 4tsf 4tt3 4yxw 4z1m 5ara 5are 5arh 5ari 5fij 5fik 5fil

(-) Related Entries Specified in the PDB File

1bmf BOVINE MITOCHONDRIAL F1-ATPASE
1cow BOVINE MITOCHONDRIAL F1-ATPASE COMPLEXED WITH AUROVERTIN B
1e1q BOVINE MITOCHONDRIAL F1-ATPASE AT 100K
1e1r BOVINE MITOCHONDRIAL F1-ATPASE INHIBITED BY MG2+ADP AND ALUMINIUM FLUORIDE
1e79 BOVINE F1-ATPASE INHIBITED BY DCCD( DICYCLOHEXYLCARBODIIMIDE)
1efr BOVINE MITOCHONDRIAL F1-ATPASE COMPLEXED WITH THE PEPTIDE ANTIBIOTIC EFRAPEPTIN
1h8e (ADP.ALF4)2(ADP.SO4) BOVINE F1-ATPASE ( ALL THREE CATALYTIC SITES OCCUPIED)
1h8h BOVINE MITOCHONDRIAL F1-ATPASE AT 100K
1nbm THE STRUCTURE OF BOVINE F1-ATPASE COVALENTLY INHIBITED WITH 4-CHLORO-7-NITROBENZOFURAZAN
1ohh BOVINE MITOCHONDRIAL F1-ATPASE COMPLEXED WITH THE INHIBITOR PROTEIN IF1
1qo1 MOLECULAR ARCHITECTURE OF THE ROTARY MOTOR IN ATP SYNTHASE FROM YEASTMITOCHONDRIA
1w0j BERYLLIUM FLUORIDE INHIBITED BOVINE F1-ATPASE
1w0k BERYLLIUM FLUORIDE INHIBITED BOVINE F1-ATPASE
2ck3 AZIDE INHIBITED BOVINE F1-ATPASE
2jdi GROUND STATE STRUCTURE OF F1-ATPASE FROM BOVINE HEART MITOCHONDRIA (BOVINE F1-ATPASE CRYSTALLISED IN THE ABSENCE OF AZIDE)
2jiz THE STRUCTURES OF F1-ATPASE INHIBITED BY RESVERATROL, PICEATANNOL AND QUERCETIN.
2jj1 THE STRUCTURE OF F1-ATPASE INHIBITED BY PICEATANNOL.
2jj2 THE STRUCTURES OF F1-ATPASE INHIBITED BY QUERCETIN.
2v7q THE STRUCTURE OF F1-ATPASE INHIBITED BY I1 -60HIS, A MONOMERIC FORM OF THE INHIBITOR PROTEIN, IF1.
2w6e LOW RESOLUTION STRUCTURES OF BOVINE MITOCHONDRIAL F1-ATPASE DURING CONTROLLED DEHYDRATION.
2w6f LOW RESOLUTION STRUCTURES OF BOVINE MITOCHONDRIAL F1-ATPASE DURING CONTROLLED DEHYDRATION: HYDRATION STATE 2.
2w6g LOW RESOLUTION STRUCTURES OF BOVINE MITOCHONDRIAL F1-ATPASE DURING CONTROLLED DEHYDRATION: HYDRATION STATE 3.
2w6h LOW RESOLUTION STRUCTURES OF BOVINE MITOCHONDRIAL F1-ATPASE DURING CONTROLLED DEHYDRATION: HYDRATION STATE 4A.
2w6i LOW RESOLUTION STRUCTURES OF BOVINE MITOCHONDRIAL F1-ATPASE DURING CONTROLLED DEHYDRATION: HYDRATION STATE 4B.
2w6j LOW RESOLUTION STRUCTURES OF BOVINE MITOCHONDRIAL F1-ATPASE DURING CONTROLLED DEHYDRATION: HYDRATION STATE 5.
2wss THE STRUCTURE OF THE MEMBRANE EXTRINSIC REGION OF BOVINE ATP SYNTHASE