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(-) Description

Title :  BOVINE MITOCHONDRIAL F1-ATPASE COMPLEXED WITH AUROVERTIN B
 
Authors :  M. Van Raaij, J. P. Abrahams, A. G. W. Leslie, J. E. Walker
Date :  08 May 96  (Deposition) - 17 Aug 96  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G
Keywords :  Atp Phosphorylase, Hydrogen Ion Transport, Atp Synthase, F1F Atp Synthase, F1-Atpase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. J. Van Raaij, J. P. Abrahams, A. G. Leslie, J. E. Walker
The Structure Of Bovine F1-Atpase Complexed With The Antibiotic Inhibitor Aurovertin B.
Proc. Natl. Acad. Sci. Usa V. 93 6913 1996
PubMed-ID: 8692918  |  Reference-DOI: 10.1073/PNAS.93.14.6913
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - BOVINE MITOCHONDRIAL F1-ATPASE
    Chains: A, B, C
    EC Number: 3.6.1.34
    Organ: HEART
    Organelle: MITOCHONDRION
    Organism Common: CATTLE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Tissue: MUSCLE
 
Molecule 2 - BOVINE MITOCHONDRIAL F1-ATPASE
    Chains: D, E, F
    EC Number: 3.6.1.34
    Organ: HEART
    Organelle: MITOCHONDRION
    Organism Common: CATTLE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Tissue: MUSCLE
 
Molecule 3 - BOVINE MITOCHONDRIAL F1-ATPASE
    Chains: G
    EC Number: 3.6.1.34
    Organ: HEART
    Organelle: MITOCHONDRION
    Organism Common: CATTLE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Tissue: MUSCLE

 Structural Features

(-) Chains, Units

  1234567
Asymmetric/Biological Unit : ABCDEFG

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 12)

Asymmetric/Biological Unit (4, 12)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2ANP4Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
3AUR2Ligand/IonAUROVERTIN B
4MG5Ligand/IonMAGNESIUM ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:176 , ANP A:600 , HOH A:669BINDING SITE FOR RESIDUE MG A 601
02AC2SOFTWARETHR B:176 , ASP B:269 , ANP B:600BINDING SITE FOR RESIDUE MG B 601
03AC3SOFTWARETHR C:176 , ANP C:600BINDING SITE FOR RESIDUE MG C 601
04AC4SOFTWARETHR D:163 , GLU D:188 , ARG D:189 , ADP D:600BINDING SITE FOR RESIDUE MG D 601
05AC5SOFTWARETHR F:163 , GLU F:188 , ANP F:600BINDING SITE FOR RESIDUE MG F 601
06AC6SOFTWAREARG A:171 , GLN A:172 , THR A:173 , GLY A:174 , LYS A:175 , THR A:176 , SER A:177 , PHE A:357 , ARG A:362 , PRO A:363 , GLN A:430 , GLN A:432 , MG A:601 , HOH A:652 , HOH A:660 , HOH A:665 , HOH A:669BINDING SITE FOR RESIDUE ANP A 600
07AC7SOFTWAREARG B:171 , GLN B:172 , THR B:173 , GLY B:174 , LYS B:175 , THR B:176 , SER B:177 , PHE B:357 , ARG B:362 , GLN B:430 , GLN B:432 , MG B:601 , HOH B:649BINDING SITE FOR RESIDUE ANP B 600
08AC8SOFTWAREARG C:171 , GLN C:172 , THR C:173 , GLY C:174 , LYS C:175 , THR C:176 , SER C:177 , PHE C:357 , GLN C:430 , GLY C:431 , GLN C:432 , MG C:601 , HOH C:635 , HOH C:638 , HOH C:654 , HOH C:678BINDING SITE FOR RESIDUE ANP C 600
09AC9SOFTWARESER C:372 , ARG C:373 , ALA D:158 , GLY D:159 , VAL D:160 , GLY D:161 , LYS D:162 , THR D:163 , VAL D:164 , TYR D:345 , PHE D:418 , ALA D:421 , PHE D:424 , THR D:425 , MG D:601 , HOH D:639BINDING SITE FOR RESIDUE ADP D 600
10BC1SOFTWARESER B:344 , VAL B:371 , ARG B:373 , ALA F:158 , GLY F:159 , VAL F:160 , GLY F:161 , LYS F:162 , THR F:163 , VAL F:164 , ARG F:189 , TYR F:345 , PHE F:418 , ALA F:421 , PHE F:424 , MG F:601 , HOH F:626 , HOH F:629BINDING SITE FOR RESIDUE ANP F 600
11BC2SOFTWAREGLU B:399 , ILE F:339 , LEU F:342 , ILE F:344 , PRO F:350 , LEU F:351 , LEU F:378 , GLN F:385 , GLN F:411 , ARG F:412 , GLN F:455 , TYR F:458BINDING SITE FOR RESIDUE AUR F 602
12BC3SOFTWAREILE E:339 , LEU E:342 , ILE E:344 , PRO E:350 , LEU E:351 , LEU E:378 , GLN E:385 , GLN E:411 , ARG E:412 , TYR E:458BINDING SITE FOR RESIDUE AUR E 479
13CATUNKNOWNGLU D:188 , ARG C:373 , GLU E:188 , ARG A:373 , GLU F:188 , ARG B:373THE CARBOXYLATE GROUP OF THE GLUTAMIC ACID RESIDUE IS BELIEVED TO ACTIVATE A WATER MOLECULE FOR INLINE ATTACK ON THE GAMMA PHOSPHATE DURING ATP HYDROLYSIS. THE ARGININE RESIDUE (WHICH IS LOCATED ON AN ADJACENT ALPHA SUBUNIT) COULD HELP TO STABILIZE THE NEGATIVE CHARGE THAT DEVELOPS ON THE TERMINAL PHOSPHATE IN THE PUTATIVE PENTACOORDINATED TRANSITION STATE.
14PLPUNKNOWNLYS A:175 , LYS B:175 , LYS C:175 , LYS D:162 , LYS E:162 , LYS F:162THE RESIDUE LISTED IS THE LYSINE WITHIN THE P -LOOP (PHOSPHATE BINDING) MOTIF, GXXXXGKT/S.

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1COW)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric/Biological Unit
No.Residues
1Asp A:269 -Asp A:270
2Arg A:362 -Pro A:363
3Asp B:269 -Asp B:270
4Arg B:362 -Pro B:363
5Asp C:269 -Asp C:270
6Arg C:362 -Pro C:363
7Asp D:256 -Asn D:257
8Tyr D:345 -Pro D:346
9Asp E:256 -Asn E:257
10Tyr E:345 -Pro E:346
11Asp F:256 -Asn F:257
12Tyr F:345 -Pro F:346

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1COW)

(-) PROSITE Motifs  (2, 7)

Asymmetric/Biological Unit (2, 7)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ATPASE_GAMMAPS00153 ATP synthase gamma subunit signature.ATPG_BOVIN283-296  1G:258-271
2ATPASE_ALPHA_BETAPS00152 ATP synthase alpha and beta subunits signature.ATPB_BOVIN396-405
 
 		  3D:346-355
E:346-355
F:346-355
ATPA_BOVIN406-415
 
 		  3A:363-372
B:363-372
C:363-372

(-) Exons   (15, 33)

Asymmetric/Biological Unit (15, 33)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSBTAT000000177101ENSBTAE00000144098chr5:61355655-61355808154ATPB_BOVIN1-52520--
1.2ENSBTAT000000177102ENSBTAE00000144099chr5:61356274-61356456183ATPB_BOVIN52-113623D:9-63
E:9-63
F:9-63		55
55
55
1.3ENSBTAT000000177103ENSBTAE00000144101chr5:61356699-61356873175ATPB_BOVIN113-171593D:63-121
E:63-121
F:63-121		59
59
59
1.4ENSBTAT000000177104ENSBTAE00000144103chr5:61357390-61357511122ATPB_BOVIN171-212423D:121-162
E:121-162
F:121-162		42
42
42
1.5ENSBTAT000000177105ENSBTAE00000144107chr5:61357757-61357941185ATPB_BOVIN212-273623D:162-223
E:162-223
F:162-223		62
62
62
1.6ENSBTAT000000177106ENSBTAE00000144109chr5:61358444-61358602159ATPB_BOVIN274-326533D:224-276
E:224-276
F:224-276		53
53
53
1.7ENSBTAT000000177107ENSBTAE00000144110chr5:61358693-61358815123ATPB_BOVIN327-367413D:277-317
E:277-317
F:277-317		41
41
41
1.8ENSBTAT000000177108ENSBTAE00000144111chr5:61359431-61359643213ATPB_BOVIN368-438713D:318-388
E:318-388
F:318-388		71
71
71
1.9ENSBTAT000000177109ENSBTAE00000144114chr5:61360024-61360225202ATPB_BOVIN439-506683D:389-456
E:389-456
F:389-456		68
68
68
1.10ENSBTAT0000001771010ENSBTAE00000297207chr5:61360774-61361036263ATPB_BOVIN506-537323D:456-475
E:456-474
F:456-474		20
19
19
2.1ENSBTAT000000185051ENSBTAE00000150694chr13:14893326-1489324087ATPG_BOVIN1-19190--
2.2ENSBTAT000000185052ENSBTAE00000150697chr13:14886562-1488652835ATPG_BOVIN19-31131G:1-66
2.3ENSBTAT000000185053ENSBTAE00000150700chr13:14886029-14885898132ATPG_BOVIN31-75451G:6-4439
2.4ENSBTAT000000185054ENSBTAE00000150704chr13:14882864-14882660205ATPG_BOVIN75-143691G:77-9014
2.5ENSBTAT000000185055ENSBTAE00000150705chr13:14882083-14881940144ATPG_BOVIN143-191490--
2.6ENSBTAT000000185056ENSBTAE00000150706chr13:14881819-1488175565ATPG_BOVIN191-213230--
2.7ENSBTAT000000185057ENSBTAE00000150707chr13:14880753-14880598156ATPG_BOVIN213-265531G:209-24032
2.8ENSBTAT000000185058ENSBTAE00000150708chr13:14880202-1488010697ATPG_BOVIN265-297331G:240-27233
2.9ENSBTAT000000185059ENSBTAE00000305670chr13:14877783-1487774737ATPG_BOVIN297-29821G:272-2721
2.10ENSBTAT0000001850510ENSBTAE00000305668chr13:14877118-14876979140ATPG_BOVIN-00--

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:487
 aligned with ATPA_BOVIN | P19483 from UniProtKB/Swiss-Prot  Length:553

    Alignment length:487
                                    76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       
           ATPA_BOVIN    67 DLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLSKIRTDGKISEESDAKLKEIVTNFLAGFEA 553
               SCOP domains d1cowa2 A:24-94 F1 ATP synthase alpha subunit, domain 1                d1cowa3 A:95-379 Central domain of alpha subunit of F1 ATP synthase                                                                                                                                                                                                                          d1cowa1 A:380-510 F1 ATP synthase alpha subunit, domain 3                                                                           SCOP domains
               CATH domains 1cowA01 A:24-93  [code=2.40.30.20, no name defined]                   1cowA02 A:94-379 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                                         1cowA03 A:380-510  [code=1.20.150.20, no name defined]                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee..eeeeee........eeee....eeeeeeee..eeeeee...hhh.....eeee.....eee..hhh..eee.................eee......................hhhhhh.........eeee.....hhhhhhhhhhhhhhhh........eeeeeeee...hhhhhhhhhhhhh...hhheeeeee.....hhhhhhhhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhhhhhh......hhh....hhhhhhhhhh......hhh...eeeeeeeee........hhhhhhhhh...eee..hhhhhh...............hhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh..........hhhhhhhhhhhh..hhhh..hhhhhhhhhhhhhhhhh..hhhhhhhhhh....hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1cow A  24 DLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGFEA 510
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       


Chain B from PDB  Type:PROTEIN  Length:487
 aligned with ATPA_BOVIN | P19483 from UniProtKB/Swiss-Prot  Length:553

    Alignment length:487
                                    76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       
           ATPA_BOVIN    67 DLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLSKIRTDGKISEESDAKLKEIVTNFLAGFEA 553
               SCOP domains d1cowb2 B:24-94 F1 ATP synthase alpha subunit, domain 1                d1cowb3 B:95-379 Central domain of alpha subunit of F1 ATP synthase                                                                                                                                                                                                                          d1cowb1 B:380-510 F1 ATP synthase alpha subunit, domain 3                                                                           SCOP domains
               CATH domains 1cowB01 B:24-93  [code=2.40.30.20, no name defined]                   1cowB02 B:94-379 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                                         1cowB03 B:380-510  [code=1.20.150.20, no name defined]                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeee........eee.....eeeeeeee..eeeeee...........eee......eeee.hhh...eee...............eeee......................hhhhhh.........eeee......hhhhhhhhhhhhhhh....hhh..eeeeeee...hhhhhhhhhhhhh...hhheeeeee.....hhhhhhhhhhhhhhhhhhhhh..eeeeeee.hhhhhhhhhhhhhhh.....hhh....hhhhhhhhhh......hhh...eeeeeeeee........hhhhhhh.....eee..hhhhh......................hhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhh..........hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh..hhhhhhhhhh....hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1cow B  24 DLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGFEA 510
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       


Chain C from PDB  Type:PROTEIN  Length:492
 aligned with ATPA_BOVIN | P19483 from UniProtKB/Swiss-Prot  Length:553

    Alignment length:492
                                    71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551  
           ATPA_BOVIN    62 ADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLSKIRTDGKISEESDAKLKEIVTNFLAGFEA 553
               SCOP domains d1cowc2 C:19-94 F1 ATP synthase alpha subunit, domain 1                     d1cowc3 C:95-379 Central domain of alpha subunit of F1 ATP synthase                                                                                                                                                                                                                          d1cowc1 C:380-510 F1 ATP synthase alpha subunit, domain 3                                                                           SCOP domains
               CATH domains -----1cowC01 C:24-93  [code=2.40.30.20, no name defined]                   1cowC02 C:94-379 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                                         1cowC03 C:380-510  [code=1.20.150.20, no name defined]                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........eeeeeeee..eeee..........eeee....eeeeeee....eeeee...hhh.....eeee.....eeee.hhh.....................eeee......................hhhhhh.........eeee.....hhhhhhhhhhhhhhhh.........eeeeeee...hhhhhhhhhhhhh...hhheeeeee.....hhhhhhhhhhhhhhhhhhhhh..eeeeeee.hhhhhhhhhhhhhhh.....hhh....hhhhhhhhhhh.....hhh...eeeeeeeee........hhhhhhh.....eeee.hhhhhh...............hhhh..hhhhhhh..hhhhhhhhhhhhhh.........hhhhhhhhhhhhhhh..........hhhhhhhhhhhh........hhhhhhhhhhhhhhhhh..hhhhhhhhhh....hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1cow C  19 ADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGFEA 510
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508  


Chain D from PDB  Type:PROTEIN  Length:467
 aligned with ATPB_BOVIN | P00829 from UniProtKB/Swiss-Prot  Length:528

    Alignment length:467
                                    68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       
           ATPB_BOVIN    59 TTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLAE 525
               SCOP domains d1cowd2 D:9-81 F1 ATP synthase beta subunit, domain 1                    d1cowd3 D:82-357 Central domain of beta subunit of F1 ATP synthase                                                                                                                                                                                                                  d1cowd1 D:358-475 F1 ATP synthase beta subunit, domain 3                                                               SCOP domains
               CATH domains 1cowD01 D:9-81  [code=2.40.10.170, no name defined]                      1cowD02 D:82-357 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                               1cowD03 D:358-475 Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee..eeeeee........eeeee.......eeeeeee....eeeeee...........eeeeeeee.eeee.hhh.....................eeee.......hhh............hhhhhhh......eeeeee.....hhhhhhhhhhh........eeeeee...hhhhhhhhhhhhh.............eeeee.....hhhhhhhhhhhhhhhhhhhh....eeeeeee.hhhhhhhhhhhhhhh.....hhh....hhhhhhhhh.........eeeeeeeee.hhh....hhhhhhhhh..eeee..hhhhhh.................hhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh........hhhh........hhhhhhhhhhhh........hhhh.....hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.2  PDB: D:9-63 UniProt: 52-113 [INCOMPLETE]     ---------------------------------------------------------Exon 1.4  PDB: D:121-162 UniProt: 171-212 -------------------------------------------------------------Exon 1.6  PDB: D:224-276 UniProt: 274-326            Exon 1.7  PDB: D:277-317 UniProt: 327-367Exon 1.8  PDB: D:318-388 UniProt: 368-438                              -------------------------------------------------------------------Exon 1.10            Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------Exon 1.3  PDB: D:63-121 UniProt: 113-171                   ----------------------------------------Exon 1.5  PDB: D:162-223 UniProt: 212-273                     ---------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9  PDB: D:389-456 UniProt: 439-506                           ------------------- Transcript 1 (2)
                 1cow D   9 TTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLAE 475
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       


Chain E from PDB  Type:PROTEIN  Length:466
 aligned with ATPB_BOVIN | P00829 from UniProtKB/Swiss-Prot  Length:528

    Alignment length:466
                                    68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518      
           ATPB_BOVIN    59 TTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA 524
               SCOP domains d1cowe2 E:9-81 F1 ATP synthase beta subunit, domain 1                    d1cowe3 E:82-357 Central domain of beta subunit of F1 ATP synthase                                                                                                                                                                                                                  d1cowe1 E:358-474 F1 ATP synthase beta subunit, domain 3                                                              SCOP domains
               CATH domains 1cowE01 E:9-81  [code=2.40.10.170, no name defined]                      1cowE02 E:82-357 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                               1cowE03 E:358-474 Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee...eeeee..........eeee.......eeeeeee....eeeeee...........eeeeeee..eeee.hhh.....................eeee......................hhhhhh.......eeeee......hhhhhhhhhhhhhhhh...eeeeeeee.hhhhhhhhhhhhhh...........eeeeeee....hhhhhhhhhhhhhhhhhhhh....eeeeeee.hhhhhhhhhhhhhhh.....hhh....hhhhhhhhhhh.......eeeeeee...hhh....hhhhhhhh...eeee..hhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh.....hhhh...........hhhhhhhhhhhhh.......hhh......hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP----------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: E:9-63 UniProt: 52-113 [INCOMPLETE]     ---------------------------------------------------------Exon 1.4  PDB: E:121-162 UniProt: 171-212 -------------------------------------------------------------Exon 1.6  PDB: E:224-276 UniProt: 274-326            Exon 1.7  PDB: E:277-317 UniProt: 327-367Exon 1.8  PDB: E:318-388 UniProt: 368-438                              -------------------------------------------------------------------Exon 1.10           Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------Exon 1.3  PDB: E:63-121 UniProt: 113-171                   ----------------------------------------Exon 1.5  PDB: E:162-223 UniProt: 212-273                     ---------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9  PDB: E:389-456 UniProt: 439-506                           ------------------ Transcript 1 (2)
                 1cow E   9 TTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA 474
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468      


Chain F from PDB  Type:PROTEIN  Length:466
 aligned with ATPB_BOVIN | P00829 from UniProtKB/Swiss-Prot  Length:528

    Alignment length:466
                                    68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518      
           ATPB_BOVIN    59 TTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA 524
               SCOP domains d1cowf2 F:9-81 F1 ATP synthase beta subunit, domain 1                    d1cowf3 F:82-357 Central domain of beta subunit of F1 ATP synthase                                                                                                                                                                                                                  d1cowf1 F:358-474 F1 ATP synthase beta subunit, domain 3                                                              SCOP domains
               CATH domains 1cowF01 F:9-81  [code=2.40.10.170, no name defined]                      1cowF02 F:82-357 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                               1cowF03 F:358-474 Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee..eeeeee.........eeee.......eeeeeee....eeeeee...........eeee.....eeee.hhh.....................eeee.......hhh.....eee....hhhhhh..eee..eeeeee.....hhhhhhhhhhh.......eeeeeee...hhhhhhhhhhhhh............eeeeee.....hhhhhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh........hhh....hhhhhhhhhhh.......eeeeeeeee.hhh....hhhhhhhhh..eeee..hhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh.....hhhhhhh........hhhhhhhhhhhh........hhh......hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP----------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: F:9-63 UniProt: 52-113 [INCOMPLETE]     ---------------------------------------------------------Exon 1.4  PDB: F:121-162 UniProt: 171-212 -------------------------------------------------------------Exon 1.6  PDB: F:224-276 UniProt: 274-326            Exon 1.7  PDB: F:277-317 UniProt: 327-367Exon 1.8  PDB: F:318-388 UniProt: 368-438                              -------------------------------------------------------------------Exon 1.10           Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------Exon 1.3  PDB: F:63-121 UniProt: 113-171                   ----------------------------------------Exon 1.5  PDB: F:162-223 UniProt: 212-273                     ---------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9  PDB: F:389-456 UniProt: 439-506                           ------------------ Transcript 1 (2)
                 1cow F   9 TTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA 474
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468      


Chain G from PDB  Type:PROTEIN  Length:122
 aligned with ATPG_BOVIN | P05631 from UniProtKB/Swiss-Prot  Length:298

    Alignment length:272
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295  
           ATPG_BOVIN    26 ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADIKTPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTISSAESMSIYDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 297
               SCOP domains d1cowg_ G: ATP synthase (F1-ATPase), gamma s                                ubunit                                                                                                                                                                                               SCOP domains
               CATH domains 1cowG00 G:1-272  [code=1.10.287.80, no name                                 defined]                                                                                                                                                                                             CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..--------------------------------....hhhhhhhhh.----------------------------------------------------------------------------------------------------------------------....hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_GAMMA  - PROSITE
           Transcript 2 (1) 2.2   -------------------------------------------Exon 2.4  PDB: G:77-90 UniProt: 75-143 [INCOMPLETE]                  -----------------------------------------------Exon 2.6  PDB: -       ---------------------------------------------------Exon 2.8  PDB: G:240-272          Transcript 2 (1)
           Transcript 2 (2) -----Exon 2.3  PDB: G:6-44 UniProt: 31-75         -------------------------------------------------------------------Exon 2.5  PDB: - UniProt: 143-191                ---------------------Exon 2.7  PDB: G:209-240 UniProt: 213-265            -------------------------------2 Transcript 2 (2)
                 1cow G   1 ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVY--------------------------------LCGAIHSSVAKQMK----------------------------------------------------------------------------------------------------------------------LANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 272
                                    10        20        30        40   |     -         -         -      | 80        90         -         -         -         -         -         -         -         -         -         -         -       210       220       230       240       250       260       270  
                                                                      44                               77           90                                                                                                                    209
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (7, 19)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (6, 19)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1COW)

(-) Gene Ontology  (34, 70)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C   (ATPA_BOVIN | P19483)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016820    hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances    Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046933    proton-transporting ATP synthase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism.
    GO:0046961    proton-transporting ATPase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.
biological process
    GO:0006754    ATP biosynthetic process    The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0015991    ATP hydrolysis coupled proton transport    The transport of protons against an electrochemical gradient, using energy from ATP hydrolysis.
    GO:0046034    ATP metabolic process    The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0015986    ATP synthesis coupled proton transport    The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005753    mitochondrial proton-transporting ATP synthase complex    A proton-transporting ATP synthase complex found in the mitochondrial membrane.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0045261    proton-transporting ATP synthase complex, catalytic core F(1)    The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled.
    GO:0033178    proton-transporting two-sector ATPase complex, catalytic domain    A protein complex that forms part of a proton-transporting two-sector ATPase complex and catalyzes ATP hydrolysis or synthesis. The catalytic domain (F1, V1, or A1) comprises a hexameric catalytic core and a central stalk, and is peripherally associated with the membrane when the two-sector ATPase is assembled.

Chain D,E,F   (ATPB_BOVIN | P00829)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0042288    MHC class I protein binding    Interacting selectively and non-covalently with major histocompatibility complex class I molecules; a set of molecules displayed on cell surfaces that are responsible for lymphocyte recognition and antigen presentation.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016820    hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances    Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046933    proton-transporting ATP synthase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism.
    GO:0046961    proton-transporting ATPase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.
biological process
    GO:0006754    ATP biosynthetic process    The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0015991    ATP hydrolysis coupled proton transport    The transport of protons against an electrochemical gradient, using energy from ATP hydrolysis.
    GO:0046034    ATP metabolic process    The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0015986    ATP synthesis coupled proton transport    The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
    GO:0001525    angiogenesis    Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
    GO:0006933    negative regulation of cell adhesion involved in substrate-bound cell migration    The disassembly of adhesions at the front and rear of a migrating cell. At the leading edge, adhesion disassembly accompanies the formation of new protrusions; at the cell rear, it promotes tail retraction.
    GO:0001649    osteoblast differentiation    The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, a mesodermal or neural crest cell that gives rise to bone.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0051453    regulation of intracellular pH    Any process that modulates the internal pH of a cell, measured by the concentration of the hydrogen ion.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0031966    mitochondrial membrane    Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope.
    GO:0042645    mitochondrial nucleoid    The region of a mitochondrion to which the DNA is confined.
    GO:0005753    mitochondrial proton-transporting ATP synthase complex    A proton-transporting ATP synthase complex found in the mitochondrial membrane.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0043209    myelin sheath    An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0045261    proton-transporting ATP synthase complex, catalytic core F(1)    The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled.
    GO:0033178    proton-transporting two-sector ATPase complex, catalytic domain    A protein complex that forms part of a proton-transporting two-sector ATPase complex and catalyzes ATP hydrolysis or synthesis. The catalytic domain (F1, V1, or A1) comprises a hexameric catalytic core and a central stalk, and is peripherally associated with the membrane when the two-sector ATPase is assembled.

Chain G   (ATPG_BOVIN | P05631)
molecular function
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046933    proton-transporting ATP synthase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism.
    GO:0046961    proton-transporting ATPase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.
biological process
    GO:0006754    ATP biosynthetic process    The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0015986    ATP synthesis coupled proton transport    The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005753    mitochondrial proton-transporting ATP synthase complex    A proton-transporting ATP synthase complex found in the mitochondrial membrane.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0043209    myelin sheath    An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
    GO:0045261    proton-transporting ATP synthase complex, catalytic core F(1)    The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled.

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  1cow
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ATPA_BOVIN | P19483: 1bmf 1e1q 1e1r 1e79 1efr 1h8e 1h8h 1nbm 1ohh 1qo1 1w0j 1w0k 2ck3 2jdi 2jiz 2jj1 2jj2 2jmx 2v7q 2w6e 2w6f 2w6g 2w6h 2w6i 2w6j 2wss 2xnd 4asu 4tsf 4tt3 4yxw 4z1m 5ara 5are 5arh 5ari 5fij 5fik 5fil
        ATPB_BOVIN | P00829: 1bmf 1e1q 1e1r 1e79 1efr 1h8e 1h8h 1nbm 1ohh 1qo1 1w0j 1w0k 2ck3 2jdi 2jiz 2jj1 2jj2 2v7q 2w6e 2w6f 2w6g 2w6h 2w6i 2w6j 2wss 2xnd 4asu 4tsf 4tt3 4yxw 4z1m 5ara 5are 5arh 5ari 5fij 5fik 5fil
        ATPG_BOVIN | P05631: 1bmf 1e1q 1e1r 1e79 1efr 1h8e 1h8h 1nbm 1ohh 1qo1 1w0j 1w0k 2ck3 2jdi 2jiz 2jj1 2jj2 2v7q 2w6e 2w6f 2w6g 2w6h 2w6i 2w6j 2wss 2xnd 4asu 4tsf 4tt3 4yxw 4z1m 5ara 5are 5arh 5ari 5fij 5fik 5fil

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1COW)