Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit - manually
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit - manually
Asym./Biol. Unit - manually  (Jmol Viewer)
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  GROUND STATE STRUCTURE OF F1-ATPASE FROM BOVINE HEART MITOCHONDRIA (BOVINE F1-ATPASE CRYSTALLISED IN THE ABSENCE OF AZIDE)
 
Authors :  M. W. Bowler, M. G. Montgomery, A. G. W. Leslie, J. E. Walker
Date :  09 Jan 07  (Deposition) - 13 Mar 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I
Keywords :  Atp Phosphorylase, Hydrolase, Atp Synthesis (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. W. Bowler, M. G. Montgomery, A. G. W. Leslie, J. E. Walker
Ground State Structure Of F1-Atpase From Bovine Heart Mitochondria At 1. 9 A Resolution
J. Biol. Chem. V. 282 14238 2007
PubMed-ID: 17350959  |  Reference-DOI: 10.1074/JBC.M700203200

(-) Compounds

Molecule 1 - ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM
    ChainsA, B, C
    EC Number3.6.3.14
    FragmentRESIDUES 44-553
    OrganHEART
    OrganelleMITOCHONDRIA
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymATP SYNTHASE ALPHA CHAIN HEART ISOFORM
    TissueMUSCLE
 
Molecule 2 - ATP SYNTHASE SUBUNIT BETA
    ChainsD, E, F
    EC Number3.6.3.14
    FragmentRESIDUES 47-528
    OrganHEART
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    Other DetailsMITOCHONDRIA
    SynonymATP SYNTHASE BETA CHAIN
    TissueMUSCLE
 
Molecule 3 - ATP SYNTHASE GAMMA CHAIN
    ChainsG
    EC Number3.6.1.34
    FragmentRESIDUES 26-298
    OrganHEART
    OrganelleMITOCHONDRIA
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    TissueMUSCLE
 
Molecule 4 - ATP SYNTHASE DELTA CHAIN
    ChainsH
    EC Number3.6.1.34
    FragmentRESIDUES 23-168
    OrganHEART
    OrganelleMITOCHONDRIA
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    TissueMUSCLE
 
Molecule 5 - ATP SYNTHASE EPSILON CHAIN
    ChainsI
    EC Number3.6.1.34
    OrganHEART
    OrganelleMITOCHONDRIA
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    TissueMUSCLE

 Structural Features

(-) Chains, Units

  123456789
Asymmetric/Biological Unit ABCDEFGHI

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric/Biological Unit (2, 10)
No.NameCountTypeFull Name
1ANP5Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MG5Ligand/IonMAGNESIUM ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:176 , ANP A:1511 , HOH A:2150 , HOH A:2200 , HOH A:2347BINDING SITE FOR RESIDUE MG A1512
02AC2SOFTWARETHR B:176 , ANP B:1511 , HOH B:2167 , HOH B:2223 , HOH B:2345BINDING SITE FOR RESIDUE MG B1512
03AC3SOFTWARETHR C:176 , ANP C:1511 , HOH C:2144 , HOH C:2192 , HOH C:2363BINDING SITE FOR RESIDUE MG C1512
04AC4SOFTWARETHR D:163 , ANP D:1480 , HOH D:2166 , HOH D:2213 , HOH D:2384BINDING SITE FOR RESIDUE MG D1481
05AC5SOFTWARETHR F:163 , ANP F:1479 , HOH F:2218 , HOH F:2260 , HOH F:2435BINDING SITE FOR RESIDUE MG F1480
06AC6SOFTWAREARG A:171 , GLN A:172 , THR A:173 , GLY A:174 , LYS A:175 , THR A:176 , SER A:177 , PHE A:357 , GLN A:430 , GLN A:432 , MG A:1512 , HOH A:2147 , HOH A:2200 , HOH A:2347 , HOH A:2349 , HOH A:2350 , HOH A:2351 , HOH A:2352 , HOH A:2353 , HOH A:2354 , HOH A:2355 , TYR D:368 , HOH D:2303 , HOH D:2306 , HOH D:2307 , HOH D:2319BINDING SITE FOR RESIDUE ANP A1511
07AC7SOFTWAREARG B:171 , GLN B:172 , THR B:173 , GLY B:174 , LYS B:175 , THR B:176 , SER B:177 , PHE B:357 , ARG B:362 , GLN B:430 , GLN B:432 , MG B:1512 , HOH B:2223 , HOH B:2281 , HOH B:2344 , HOH B:2345 , HOH B:2346 , HOH B:2347 , HOH B:2348 , ARG E:356BINDING SITE FOR RESIDUE ANP B1511
08AC8SOFTWAREARG C:171 , GLN C:172 , THR C:173 , GLY C:174 , LYS C:175 , THR C:176 , SER C:177 , PHE C:357 , GLN C:430 , GLN C:432 , MG C:1512 , HOH C:2192 , HOH C:2359 , HOH C:2360 , HOH C:2361 , HOH C:2362 , HOH C:2363 , HOH C:2364 , HOH C:2365 , HOH C:2366 , HOH C:2367 , HOH F:2350 , HOH F:2351 , HOH F:2364BINDING SITE FOR RESIDUE ANP C1511
09AC9SOFTWARESER C:344 , SER C:372 , ARG C:373 , GLY D:157 , GLY D:159 , VAL D:160 , GLY D:161 , LYS D:162 , THR D:163 , VAL D:164 , GLU D:188 , ARG D:189 , TYR D:311 , TYR D:345 , PHE D:418 , ALA D:421 , PHE D:424 , THR D:425 , MG D:1481 , HOH D:2166 , HOH D:2167 , HOH D:2168 , HOH D:2213 , HOH D:2384 , HOH D:2385 , HOH D:2386 , HOH D:2387 , HOH D:2388 , HOH D:2389BINDING SITE FOR RESIDUE ANP D1480
10BC1SOFTWAREILE B:343 , SER B:344 , VAL B:371 , ARG B:373 , GLY F:157 , ALA F:158 , GLY F:159 , VAL F:160 , GLY F:161 , LYS F:162 , THR F:163 , VAL F:164 , GLU F:188 , ARG F:189 , TYR F:345 , PHE F:418 , ALA F:421 , PHE F:424 , THR F:425 , MG F:1480 , HOH F:2206 , HOH F:2260 , HOH F:2430 , HOH F:2432 , HOH F:2433 , HOH F:2434 , HOH F:2435BINDING SITE FOR RESIDUE ANP F1479

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2JDI)

(-) Cis Peptide Bonds  (19, 19)

Asymmetric/Biological Unit
No.Residues
1Asp A:269 -Asp A:270
2Arg A:362 -Pro A:363
3Asp B:269 -Asp B:270
4Arg B:362 -Pro B:363
5Asp C:269 -Asp C:270
6Arg C:362 -Pro C:363
7Asp D:256 -Asn D:257
8Tyr D:345 -Pro D:346
9Asp E:256 -Asn E:257
10Tyr E:345 -Pro E:346
11Asp F:256 -Asn F:257
12Tyr F:345 -Pro F:346
13Ile G:68 -Ile G:69
14Thr H:99 -Leu H:100
15Asp H:104 -Leu H:105
16Gly H:121 -Ala H:122
17Ala H:122 -Ala H:123
18Thr H:127 -Arg H:128
19Gly I:8 -Leu I:9

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2JDI)

(-) PROSITE Motifs  (2, 7)

Asymmetric/Biological Unit (2, 7)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ATPASE_GAMMAPS00153 ATP synthase gamma subunit signature.ATPG_BOVIN283-296  1G:258-271
2ATPASE_ALPHA_BETAPS00152 ATP synthase alpha and beta subunits signature.ATPB_BOVIN396-405
 
 
  3D:346-355
E:346-355
F:346-355
ATPA_BOVIN406-415
 
 
  3A:363-372
B:363-372
C:363-372

(-) Exons   (22, 40)

Asymmetric/Biological Unit (22, 40)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSBTAT000000007211ENSBTAE00000005335chr7:42707782-42707968187ATPD_BOVIN1-48481H:17-2610
1.2ENSBTAT000000007212ENSBTAE00000005337chr7:42708593-42708746154ATPD_BOVIN49-100521H:27-78 (gaps)52
1.3ENSBTAT000000007213ENSBTAE00000005339chr7:42709233-4270932189ATPD_BOVIN100-129301H:78-107 (gaps)30
1.4ENSBTAT000000007214ENSBTAE00000278497chr7:42709412-42709954543ATPD_BOVIN130-169401H:108-14538

2.1ENSBTAT000000177101ENSBTAE00000144098chr5:61355655-61355808154ATPB_BOVIN1-52520--
2.2ENSBTAT000000177102ENSBTAE00000144099chr5:61356274-61356456183ATPB_BOVIN52-113623D:9-63
E:9-63
F:9-63
55
55
55
2.3ENSBTAT000000177103ENSBTAE00000144101chr5:61356699-61356873175ATPB_BOVIN113-171593D:63-121
E:63-121
F:63-121
59
59
59
2.4ENSBTAT000000177104ENSBTAE00000144103chr5:61357390-61357511122ATPB_BOVIN171-212423D:121-162
E:121-162
F:121-162
42
42
42
2.5ENSBTAT000000177105ENSBTAE00000144107chr5:61357757-61357941185ATPB_BOVIN212-273623D:162-223
E:162-223
F:162-223
62
62
62
2.6ENSBTAT000000177106ENSBTAE00000144109chr5:61358444-61358602159ATPB_BOVIN274-326533D:224-276
E:224-276
F:224-276
53
53
53
2.7ENSBTAT000000177107ENSBTAE00000144110chr5:61358693-61358815123ATPB_BOVIN327-367413D:277-317
E:277-317
F:277-317
41
41
41
2.8ENSBTAT000000177108ENSBTAE00000144111chr5:61359431-61359643213ATPB_BOVIN368-438713D:318-388
E:318-387
F:318-388
71
70
71
2.9ENSBTAT000000177109ENSBTAE00000144114chr5:61360024-61360225202ATPB_BOVIN439-506683D:389-456
E:396-456
F:389-456
68
61
68
2.10ENSBTAT0000001771010ENSBTAE00000297207chr5:61360774-61361036263ATPB_BOVIN506-537323D:456-475
E:456-474
F:456-474
20
19
19

3.1ENSBTAT000000185051ENSBTAE00000150694chr13:14893326-1489324087ATPG_BOVIN1-19190--
3.2ENSBTAT000000185052ENSBTAE00000150697chr13:14886562-1488652835ATPG_BOVIN19-31131G:1-66
3.3ENSBTAT000000185053ENSBTAE00000150700chr13:14886029-14885898132ATPG_BOVIN31-75451G:6-4742
3.4ENSBTAT000000185054ENSBTAE00000150704chr13:14882864-14882660205ATPG_BOVIN75-143691G:67-116 (gaps)50
3.5ENSBTAT000000185055ENSBTAE00000150705chr13:14882083-14881940144ATPG_BOVIN143-191491G:127-166 (gaps)40
3.6ENSBTAT000000185056ENSBTAE00000150706chr13:14881819-1488175565ATPG_BOVIN191-213231G:166-1738
3.7ENSBTAT000000185057ENSBTAE00000150707chr13:14880753-14880598156ATPG_BOVIN213-265531G:206-24035
3.8ENSBTAT000000185058ENSBTAE00000150708chr13:14880202-1488010697ATPG_BOVIN265-297331G:240-27233
3.9ENSBTAT000000185059ENSBTAE00000305670chr13:14877783-1487774737ATPG_BOVIN297-29821G:272-2732
3.10ENSBTAT0000001850510ENSBTAE00000305668chr13:14877118-14876979140ATPG_BOVIN-00--

4.1ENSBTAT000000353371ENSBTAE00000417791chr22:35979709-35980100392ATP5E_BOVIN1-77771I:1-2525

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:487
 aligned with ATPA_BOVIN | P19483 from UniProtKB/Swiss-Prot  Length:553

    Alignment length:487
                                    76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       
           ATPA_BOVIN    67 DLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLSKIRTDGKISEESDAKLKEIVTNFLAGFEA 553
               SCOP domains d2jdia2 A:24-94 F1 ATP synthase alpha subunit, domain 1                d2jdia3 A:95-379 Central domain of alpha subunit of F1 ATP synthase                                                                                                                                                                                                                          d2jdia1 A:380-510 F1 ATP synthase alpha subunit, domain 3                                                                           SCOP domains
               CATH domains 2jdiA01 A:24-93  [code=2.40.30.20, no name defined]                   2jdiA02 A:94-379 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                                         2jdiA03 A:380-510  [code=1.20.150.20, no name defined]                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee................eeee....eeeeeee...........hhhhh....eee......eeeehhhhh..ee................eeee.....................hhhhhhhh........eeee....hhhhhhhhhhhhhhhhhh........eeeeeee..hhhhhhhhhhhhhhh.hhh.eeeeee....hhhhhhhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhhhh....hhhhh..hhhhhhhhhhh.....hhhhh..eeeeeeeee.......hhhhhhhhhhh.eeee.hhhhhhhh..........ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jdi A  24 DLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGFEA 510
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       

Chain B from PDB  Type:PROTEIN  Length:480
 aligned with ATPA_BOVIN | P19483 from UniProtKB/Swiss-Prot  Length:553

    Alignment length:488
                                    75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545        
           ATPA_BOVIN    66 VDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLSKIRTDGKISEESDAKLKEIVTNFLAGFEA 553
               SCOP domains d2jdib2 B:23-94 F1 ATP synthase alpha subunit, domain 1                 d2jdib3 B:95-379 Central domain of alpha subunit of F1 ATP synthase                                                                                                                                                                                                                          d2jdib1 B:380-510 F1 A        TP synthase alpha subunit, domain 3                                                                   SCOP domains
               CATH domains -2jdiB01 B:24-93  [code=2.40.30.20, no name defined]                   2jdiB02 B:94-379 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                                         2jdiB03 B:380-509  [co        de=1.20.150.20, no name defined]                                                                    - CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee...eeeeee.......eeeee....eeeeeee....eeeee..hhhhh....eeeeeeee.eee.hhhhh..ee.................eee.....................hhhhhhhh........eeee....hhhhhhhhhhhhhhhhhh........eeeeeee..hhhhhhhhhhhhhhh.hhh.eeeeee....hhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhhhh....hhhhh..hhhhhhhhhhh..ee.hhhhh..eeeeeeeee.......hhhhhhhhh...eeeeehhhhhhh...........ee.hhhhhhhhhhhhhhhhhhhhhhhhhhh.--------.....hhhhhhhhhhhhhh........hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jdi B  23 VDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVA--------LDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGFEA 510
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392        |-       412       422       432       442       452       462       472       482       492       502        
                                                                                                                                                                                                                                                                                                                                                                                                                    401      410                                                                                                    

Chain C from PDB  Type:PROTEIN  Length:487
 aligned with ATPA_BOVIN | P19483 from UniProtKB/Swiss-Prot  Length:553

    Alignment length:487
                                    76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       
           ATPA_BOVIN    67 DLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLSKIRTDGKISEESDAKLKEIVTNFLAGFEA 553
               SCOP domains d2jdic2 C:24-94 F1 ATP synthase alpha subunit, domain 1                d2jdic3 C:95-379 Central domain of alpha subunit of F1 ATP synthase                                                                                                                                                                                                                          d2jdic1 C:380-510 F1 ATP synthase alpha subunit, domain 3                                                                           SCOP domains
               CATH domains 2jdiC01 C:24-93  [code=2.40.30.20, no name defined]                   2jdiC02 C:94-379 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                                         2jdiC03 C:380-510  [code=1.20.150.20, no name defined]                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee..eeeeee........eeee....eeeeeee....eeeee..hhhhh....eeeeeee..eeeehhhhh..ee................eeee.....................hhhhhhhh........eeee....hhhhhhhhhhhhhhhhhh........eeeeeee..hhhhhhhhhhhhhhh.hhh.eeeeee....hhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhhhh....hhhhh..hhhhhhhhhhh.....hhhhh..eeeeeeeee.......hhhhhhhhh...eeeeehhhhhhhh..........ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jdi C  24 DLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGFEA 510
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       

Chain D from PDB  Type:PROTEIN  Length:467
 aligned with ATPB_BOVIN | P00829 from UniProtKB/Swiss-Prot  Length:528

    Alignment length:467
                                    68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       
           ATPB_BOVIN    59 TTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLAE 525
               SCOP domains d2jdid2 D:9-81 F1 ATP synthase beta subunit, domain 1                    d2jdid3 D:82-357 Central domain of beta subunit of F1 ATP synthase                                                                                                                                                                                                                  d2jdid1 D:358-475 F1 ATP synthase beta subunit, domain 3                                                               SCOP domains
               CATH domains 2jdiD01 D:9-81  [code=2.40.10.170, no name defined]                      2jdiD02 D:82-357 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                               2jdiD03 D:358-475 Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee..eeeeee.........eeee.......eeeeeeeee..eeeeee...........eeee.....eee.hhhh...ee.................eee......hhhhh.....ee...hhhhhhhh.ee...eeeeee....hhhhhhhhhhhhhh.....eeeeeee..hhhhhhhhhhhhhhh...........eeeeee....hhhhhhhhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhh...hhhhh..hhhhhhhhhhh.........eeeeeeee.hhhh..hhhhhhhhhhh.eeee.hhhhhh............ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh......hhhhhhhhhhhhhh......hhhhhh...hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 2 (1) Exon 2.2  PDB: D:9-63 UniProt: 52-113 [INCOMPLETE]     ---------------------------------------------------------Exon 2.4  PDB: D:121-162 UniProt: 171-212 -------------------------------------------------------------Exon 2.6  PDB: D:224-276 UniProt: 274-326            Exon 2.7  PDB: D:277-317 UniProt: 327-367Exon 2.8  PDB: D:318-388 UniProt: 368-438                              -------------------------------------------------------------------Exon 2.10            Transcript 2 (1)
           Transcript 2 (2) ------------------------------------------------------Exon 2.3  PDB: D:63-121 UniProt: 113-171                   ----------------------------------------Exon 2.5  PDB: D:162-223 UniProt: 212-273                     ---------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 2.9  PDB: D:389-456 UniProt: 439-506                           ------------------- Transcript 2 (2)
                 2jdi D   9 TTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLAE 475
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       

Chain E from PDB  Type:PROTEIN  Length:458
 aligned with ATPB_BOVIN | P00829 from UniProtKB/Swiss-Prot  Length:528

    Alignment length:466
                                    68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518      
           ATPB_BOVIN    59 TTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA 524
               SCOP domains d2jdie2 E:9-81 F1 ATP synthase beta subunit, domain 1                    d2jdie3 E:82-357 Central domain of beta subunit of F1 ATP synthase                                                                                                                                                                                                                  d2jdie1 E:358-474 F1 ATP synth        ase beta subunit, domain 3                                                      SCOP domains
               CATH domains 2jdiE01 E:9-81  [code=2.40.10.170, no name defined]                      2jdiE02 E:82-357 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                               2jdiE03 E:358-474 Bovine Mitoc        hondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee..eeeee..........eeee.......eeeeeeeee..eeeeee...........eeee.....eeeehhhhh..ee................eeee......hhhh......ee...hhhhhhhh.ee...eeeee.....hhhhhhhhhhhhhhhhhh..eeeeeeeehhhhhhhhhhhhhhhh..........eeeeeee...hhhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhhhh....hhhhh..hhhhhhhhhhh........eeeeeee..hhhhh..hhhhhhhhh...eeee.hhhhhh......................hhhhhhhhhhhhhhhhhhhhh...--------.hhhhhhhhhhhhhhhhhh...hhhhhhhhh......hhhhhhhhhhhhhh...............hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP----------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 2 (1) Exon 2.2  PDB: E:9-63 UniProt: 52-113 [INCOMPLETE]     ---------------------------------------------------------Exon 2.4  PDB: E:121-162 UniProt: 171-212 -------------------------------------------------------------Exon 2.6  PDB: E:224-276 UniProt: 274-326            Exon 2.7  PDB: E:277-317 UniProt: 327-367Exon 2.8  PDB: E:318-387 UniProt: 368-438 [INCOMPLETE]                 -------------------------------------------------------------------Exon 2.10           Transcript 2 (1)
           Transcript 2 (2) ------------------------------------------------------Exon 2.3  PDB: E:63-121 UniProt: 113-171                   ----------------------------------------Exon 2.5  PDB: E:162-223 UniProt: 212-273                     ---------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 2.9  PDB: E:396-456 UniProt: 439-506 [INCOMPLETE]              ------------------ Transcript 2 (2)
                 2jdi E   9 TTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDI--------LSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA 474
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378        |-       398       408       418       428       438       448       458       468      
                                                                                                                                                                                                                                                                                                                                                                                                                    387      396                                                                              

Chain F from PDB  Type:PROTEIN  Length:466
 aligned with ATPB_BOVIN | P00829 from UniProtKB/Swiss-Prot  Length:528

    Alignment length:466
                                    68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518      
           ATPB_BOVIN    59 TTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA 524
               SCOP domains d2jdif2 F:9-81 F1 ATP synthase beta subunit, domain 1                    d2jdif3 F:82-357 Central domain of beta subunit of F1 ATP synthase                                                                                                                                                                                                                  d2jdif1 F:358-474 F1 ATP synthase beta subunit, domain 3                                                              SCOP domains
               CATH domains 2jdiF01 F:9-81  [code=2.40.10.170, no name defined]                      2jdiF02 F:82-357 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                               2jdiF03 F:358-474 Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee..eeeeee.........eeee.......eeeeeeeee..eeeeee...........eeee.....eeeehhhhh..ee................eeee......hhhhh.....ee...hhhhhhhh.ee...eeeeee....hhhhhhhhhhhhh......eeeeeee..hhhhhhhhhhhhhhhh..........eeeeee....hhhhhhhhhhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhhhh....hhhhh..hhhhhhhhhhh.........eeeeeeee.hhhh..hhhhhhhhhhh.eeee.hhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh......hhhhhhhhhhhhhhh.....hhhhhh...hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP----------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 2 (1) Exon 2.2  PDB: F:9-63 UniProt: 52-113 [INCOMPLETE]     ---------------------------------------------------------Exon 2.4  PDB: F:121-162 UniProt: 171-212 -------------------------------------------------------------Exon 2.6  PDB: F:224-276 UniProt: 274-326            Exon 2.7  PDB: F:277-317 UniProt: 327-367Exon 2.8  PDB: F:318-388 UniProt: 368-438                              -------------------------------------------------------------------Exon 2.10           Transcript 2 (1)
           Transcript 2 (2) ------------------------------------------------------Exon 2.3  PDB: F:63-121 UniProt: 113-171                   ----------------------------------------Exon 2.5  PDB: F:162-223 UniProt: 212-273                     ---------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 2.9  PDB: F:389-456 UniProt: 439-506                           ------------------ Transcript 2 (2)
                 2jdi F   9 TTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA 474
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468      

Chain G from PDB  Type:PROTEIN  Length:184
 aligned with ATPG_BOVIN | P05631 from UniProtKB/Swiss-Prot  Length:298

    Alignment length:273
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295   
           ATPG_BOVIN    26 ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADIKTPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTISSAESMSIYDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD 298
               SCOP domains d2jdig_ G: ATP synthase (F1-ATPase), gamma subu                   nit                                                                                                                                                                                                             SCOP domains
               CATH domains 2jdiG01 G:1-25,G:232-267 2jdiG02 G:26-231  [cod                   e=3.40.1380.10, no n                  ame defined]                                                                                                                   2jdiG01 G:1-25,G:232-267            ------ CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..-------------------.............hhhhhhh------------------....hhhhhhhh----------..........hhhhhhhhhhhh----------.....ee.....ee.--------------------------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_GAMMA  -- PROSITE
           Transcript 3 (1) 3.2   -------------------------------------------Exon 3.4  PDB: G:67-116 (gaps) UniProt: 75-143 [INCOMPLETE]          -----------------------------------------------Exon 3.6  PDB: G:166-17---------------------------------------------------Exon 3.8  PDB: G:240-272         - Transcript 3 (1)
           Transcript 3 (2) -----Exon 3.3  PDB: G:6-47 UniProt: 31-75         -------------------------------------------------------------------Exon 3.5  PDB: G:127-166 (gaps) UniProt: 143-191 ---------------------Exon 3.7  PDB: G:206-240 UniProt: 213-265            -------------------------------3. Transcript 3 (2)
                 2jdi G   1 ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVG-------------------LIIGVSSDRGLCGAIHSSVA------------------IIGVGDKIRSIL----------TFKEVGRRPPTFGDASVIALEL----------SIIFNRFRSVISYKT--------------------------------EYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD 273
                                    10        20        30        40      |  -         -      | 70        80     |   -         -    |  110     |   -      |130       140       | -       160       170  |      -         -         -     | 210       220       230       240       250       260       270   
                                                                         47                  67                 86                105        116        127                  148        159           173                              206                                                                   

Chain H from PDB  Type:PROTEIN  Length:88
 aligned with ATPD_BOVIN | P05630 from UniProtKB/Swiss-Prot  Length:168

    Alignment length:129
                                    48        58        68        78        88        98       108       118       128       138       148       158         
           ATPD_BOVIN    39 SFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEALVKAL 167
               SCOP domains d2jdih2 H:17-     100 Ep                 silon su          bunit          of F1F0-ATd2jdih1 H:101-145                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------2jdiH02 H:104-145                          CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee....eee.-----......-----------------........----------....ee---------.eee...........hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  Exon 1.2  PDB: H:27-78 (gaps) UniProt: 49-100       -----------------------------Exon 1.4  PDB: H:108-145 [INCOMPLETE]  Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------Exon 1.3  PDB: H:78-107 (gaps)-------------------------------------- Transcript 1 (2)
                 2jdi H  17 SFTFASPTQVFFN-----QVDVPT-----------------LRPGLVVV----------FVSSGS---------QLLAEEAVTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEALVKAL 145
                                    26  |     36   |     -         - |      |-        76    |    -    |   96       106       116       126       136         
                                       29    35   40                58     65         76   81        91                                                      

Chain I from PDB  Type:PROTEIN  Length:25
 aligned with ATP5E_BOVIN | P05632 from UniProtKB/Swiss-Prot  Length:51

    Alignment length:25
                                    11        21     
          ATP5E_BOVIN     2 VAYWRQAGLSYIRYSQICAKAVRDA  26
               SCOP domains d2jdii_ I:                SCOP domains
               CATH domains ------------------------- CATH domains
               Pfam domains ------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------- SAPs(SNPs)
                    PROSITE ------------------------- PROSITE
               Transcript 4 Exon 4.1  PDB: I:1-25     Transcript 4
                 2jdi I   1 VAYWRQAGLSYIRYSQICAKAVRDA  25
                                    10        20     

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (10, 22)

Asymmetric/Biological Unit

(-) CATH Domains  (8, 21)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2JDI)

(-) Gene Ontology  (38, 101)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C   (ATPA_BOVIN | P19483)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016820    hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances    Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046933    proton-transporting ATP synthase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism.
    GO:0046961    proton-transporting ATPase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.
biological process
    GO:0006754    ATP biosynthetic process    The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0015991    ATP hydrolysis coupled proton transport    The transport of protons against an electrochemical gradient, using energy from ATP hydrolysis.
    GO:0046034    ATP metabolic process    The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0015986    ATP synthesis coupled proton transport    The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005753    mitochondrial proton-transporting ATP synthase complex    A proton-transporting ATP synthase complex found in the mitochondrial membrane.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0045261    proton-transporting ATP synthase complex, catalytic core F(1)    The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled.
    GO:0033178    proton-transporting two-sector ATPase complex, catalytic domain    A protein complex that forms part of a proton-transporting two-sector ATPase complex and catalyzes ATP hydrolysis or synthesis. The catalytic domain (F1, V1, or A1) comprises a hexameric catalytic core and a central stalk, and is peripherally associated with the membrane when the two-sector ATPase is assembled.

Chain D,E,F   (ATPB_BOVIN | P00829)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0042288    MHC class I protein binding    Interacting selectively and non-covalently with major histocompatibility complex class I molecules; a set of molecules displayed on cell surfaces that are responsible for lymphocyte recognition and antigen presentation.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016820    hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances    Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046933    proton-transporting ATP synthase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism.
    GO:0046961    proton-transporting ATPase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.
biological process
    GO:0006754    ATP biosynthetic process    The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0015991    ATP hydrolysis coupled proton transport    The transport of protons against an electrochemical gradient, using energy from ATP hydrolysis.
    GO:0046034    ATP metabolic process    The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0015986    ATP synthesis coupled proton transport    The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
    GO:0001525    angiogenesis    Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
    GO:0006933    negative regulation of cell adhesion involved in substrate-bound cell migration    The disassembly of adhesions at the front and rear of a migrating cell. At the leading edge, adhesion disassembly accompanies the formation of new protrusions; at the cell rear, it promotes tail retraction.
    GO:0001649    osteoblast differentiation    The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, a mesodermal or neural crest cell that gives rise to bone.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0051453    regulation of intracellular pH    Any process that modulates the internal pH of a cell, measured by the concentration of the hydrogen ion.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0031966    mitochondrial membrane    Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope.
    GO:0042645    mitochondrial nucleoid    The region of a mitochondrion to which the DNA is confined.
    GO:0005753    mitochondrial proton-transporting ATP synthase complex    A proton-transporting ATP synthase complex found in the mitochondrial membrane.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0043209    myelin sheath    An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0045261    proton-transporting ATP synthase complex, catalytic core F(1)    The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled.
    GO:0033178    proton-transporting two-sector ATPase complex, catalytic domain    A protein complex that forms part of a proton-transporting two-sector ATPase complex and catalyzes ATP hydrolysis or synthesis. The catalytic domain (F1, V1, or A1) comprises a hexameric catalytic core and a central stalk, and is peripherally associated with the membrane when the two-sector ATPase is assembled.

Chain G   (ATPG_BOVIN | P05631)
molecular function
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046933    proton-transporting ATP synthase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism.
    GO:0046961    proton-transporting ATPase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.
biological process
    GO:0006754    ATP biosynthetic process    The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0015986    ATP synthesis coupled proton transport    The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005753    mitochondrial proton-transporting ATP synthase complex    A proton-transporting ATP synthase complex found in the mitochondrial membrane.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0043209    myelin sheath    An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
    GO:0045261    proton-transporting ATP synthase complex, catalytic core F(1)    The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled.

Chain H   (ATPD_BOVIN | P05630)
molecular function
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0015078    hydrogen ion transmembrane transporter activity    Enables the transfer of hydrogen ions from one side of a membrane to the other.
    GO:0046933    proton-transporting ATP synthase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism.
    GO:0046961    proton-transporting ATPase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.
biological process
    GO:0006754    ATP biosynthetic process    The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0015986    ATP synthesis coupled proton transport    The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005740    mitochondrial envelope    The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005753    mitochondrial proton-transporting ATP synthase complex    A proton-transporting ATP synthase complex found in the mitochondrial membrane.
    GO:0000275    mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)    The catalytic sector of the mitochondrial hydrogen-transporting ATP synthase; it comprises the catalytic core and central stalk, and is peripherally associated with the mitochondrial inner membrane when the entire ATP synthase is assembled.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045259    proton-transporting ATP synthase complex    A proton-transporting two-sector ATPase complex that catalyzes the phosphorylation of ADP to ATP during oxidative phosphorylation. The complex comprises a membrane sector (F0) that carries out proton transport and a cytoplasmic compartment sector (F1) that catalyzes ATP synthesis by a rotational mechanism; the extramembrane sector (containing 3 a and 3 b subunits) is connected via the d-subunit to the membrane sector by several smaller subunits. Within this complex, the g and e subunits and the 9-12 c subunits rotate by consecutive 120 degree angles and perform parts of ATP synthesis. This movement is driven by the hydrogen ion electrochemical potential gradient.
    GO:0045261    proton-transporting ATP synthase complex, catalytic core F(1)    The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled.

Chain I   (ATP5E_BOVIN | P05632)
molecular function
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0046933    proton-transporting ATP synthase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism.
    GO:0046961    proton-transporting ATPase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.
biological process
    GO:0006754    ATP biosynthetic process    The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0015986    ATP synthesis coupled proton transport    The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005753    mitochondrial proton-transporting ATP synthase complex    A proton-transporting ATP synthase complex found in the mitochondrial membrane.
    GO:0000275    mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)    The catalytic sector of the mitochondrial hydrogen-transporting ATP synthase; it comprises the catalytic core and central stalk, and is peripherally associated with the mitochondrial inner membrane when the entire ATP synthase is assembled.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045261    proton-transporting ATP synthase complex, catalytic core F(1)    The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    ANP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Ala H:122 - Ala H:123   [ RasMol ]  
    Arg A:362 - Pro A:363   [ RasMol ]  
    Arg B:362 - Pro B:363   [ RasMol ]  
    Arg C:362 - Pro C:363   [ RasMol ]  
    Asp A:269 - Asp A:270   [ RasMol ]  
    Asp B:269 - Asp B:270   [ RasMol ]  
    Asp C:269 - Asp C:270   [ RasMol ]  
    Asp D:256 - Asn D:257   [ RasMol ]  
    Asp E:256 - Asn E:257   [ RasMol ]  
    Asp F:256 - Asn F:257   [ RasMol ]  
    Asp H:104 - Leu H:105   [ RasMol ]  
    Gly H:121 - Ala H:122   [ RasMol ]  
    Gly I:8 - Leu I:9   [ RasMol ]  
    Ile G:68 - Ile G:69   [ RasMol ]  
    Thr H:127 - Arg H:128   [ RasMol ]  
    Thr H:99 - Leu H:100   [ RasMol ]  
    Tyr D:345 - Pro D:346   [ RasMol ]  
    Tyr E:345 - Pro E:346   [ RasMol ]  
    Tyr F:345 - Pro F:346   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2jdi
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  ATP5E_BOVIN | P05632
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
  ATPA_BOVIN | P19483
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
  ATPB_BOVIN | P00829
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
  ATPD_BOVIN | P05630
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
  ATPG_BOVIN | P05631
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  3.6.1.34
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
  3.6.3.14
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  ATP5E_BOVIN | P05632
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  ATPA_BOVIN | P19483
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  ATPB_BOVIN | P00829
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  ATPD_BOVIN | P05630
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  ATPG_BOVIN | P05631
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ATP5E_BOVIN | P056321e79 1h8e 2ck3 2v7q 2w6h 2w6i 2w6j 2wss 2xnd 4asu 4yxw 5ara 5are 5arh 5ari 5fij 5fik 5fil
        ATPA_BOVIN | P194831bmf 1cow 1e1q 1e1r 1e79 1efr 1h8e 1h8h 1nbm 1ohh 1qo1 1w0j 1w0k 2ck3 2jiz 2jj1 2jj2 2jmx 2v7q 2w6e 2w6f 2w6g 2w6h 2w6i 2w6j 2wss 2xnd 4asu 4tsf 4tt3 4yxw 4z1m 5ara 5are 5arh 5ari 5fij 5fik 5fil
        ATPB_BOVIN | P008291bmf 1cow 1e1q 1e1r 1e79 1efr 1h8e 1h8h 1nbm 1ohh 1qo1 1w0j 1w0k 2ck3 2jiz 2jj1 2jj2 2v7q 2w6e 2w6f 2w6g 2w6h 2w6i 2w6j 2wss 2xnd 4asu 4tsf 4tt3 4yxw 4z1m 5ara 5are 5arh 5ari 5fij 5fik 5fil
        ATPD_BOVIN | P056301e79 1h8e 2ck3 2v7q 2w6h 2w6i 2w6j 2wss 2xnd 4asu 4yxw 5ara 5are 5arh 5ari 5fij 5fik 5fil
        ATPG_BOVIN | P056311bmf 1cow 1e1q 1e1r 1e79 1efr 1h8e 1h8h 1nbm 1ohh 1qo1 1w0j 1w0k 2ck3 2jiz 2jj1 2jj2 2v7q 2w6e 2w6f 2w6g 2w6h 2w6i 2w6j 2wss 2xnd 4asu 4tsf 4tt3 4yxw 4z1m 5ara 5are 5arh 5ari 5fij 5fik 5fil

(-) Related Entries Specified in the PDB File

1bmf BOVINE MITOCHONDRIAL F1-ATPASE
1cow BOVINE MITOCHONDRIAL F1-ATPASE COMPLEXED WITH AUROVERTIN B
1e1q BOVINE MITOCHONDRIAL F1-ATPASE AT 100K
1e1r BOVINE MITOCHONDRIAL F1-ATPASE INHIBITED BY MG2+ADP AND ALUMINIUM FLUORIDE
1e79 BOVINE F1-ATPASE INHIBITED BY DCCD( DICYCLOHEXYLCARBODIIMIDE)
1efr BOVINE MITOCHONDRIAL F1-ATPASE COMPLEXED WITH THE PEPTIDE ANTIBIOTIC EFRAPEPTIN
1h8e (ADP.ALF4)2(ADP.SO4) BOVINE F1-ATPASE ( ALL THREE CATALYTIC SITES OCCUPIED)
1h8h BOVINE MITOCHONDRIAL F1-ATPASE AT 100K
1nbm THE STRUCTURE OF BOVINE F1-ATPASE COVALENTLY INHIBITED WITH 4-CHLORO-7-NITROBENZOFURAZAN
1ohh BOVINE MITOCHONDRIAL F1-ATPASE COMPLEXED WITH THE INHIBITOR PROTEIN IF1
1qo1 MOLECULAR ARCHITECTURE OF THE ROTARY MOTOR IN ATP SYNTHASE FROM YEASTMITOCHONDRIA
1w0j BERYLLIUM FLUORIDE INHIBITED BOVINE F1-ATPASE
1w0k BERYLLIUM FLUORIDE INHIBITED BOVINE F1-ATPASE
2ck3 AZIDE INHIBITED BOVINE F1-ATPASE