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(-) Description

Title :  FACTOR IXA SUPERACTIVE MUTANT, EGR-CMK INHIBITED
 
Authors :  T. Zogg, H. Brandstetter
Date :  06 Aug 09  (Deposition) - 22 Dec 09  (Release) - 05 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  E,L,S
Keywords :  Serine Protease, Zymogen, Hydrolase, Glycoprotein, Hydroxylation, Phosphoprotein, Sulfation, Hemostasis, Hemophilia, Xase-Like Variant, Communication Channel, Gamma-Carboxyglutamic Acid, Egf-Like Domain, Disease Mutation, Blood Clotting (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. Zogg, H. Brandstetter
Structural Basis Of The Cofactor- And Substrate-Assisted Activation Of Human Coagulation Factor Ixa
Structure V. 17 1669 2009
PubMed-ID: 20004170  |  Reference-DOI: 10.1016/J.STR.2009.10.011

(-) Compounds

Molecule 1 - COAGULATION FACTOR IXA LIGHT CHAIN
    ChainsE
    EC Number3.4.21.22
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET-FIXA-3X
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System VectorPET22D
    FragmentEGF2 DOMAIN, RESIDUES 133-191
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymHUMAN COAGULATION FACTOR IXA, CHRISTMAS FACTOR, PLASMA THROMBOPLASTIN COMPONENT, PTC
 
Molecule 2 - GLU-GLY-ARG-CHLOROMETHYL KETONE
    ChainsL
    EngineeredYES
    Organism ScientificSYNTHETIC CONSTRUCT
    Organism Taxid32630
    SyntheticYES
 
Molecule 3 - COAGULATION FACTOR IXA HEAVY CHAIN
    ChainsS
    EC Number3.4.21.22
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET-FIXA-3X
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System VectorPET22D
    FragmentCATALYTIC DOMAIN, RESIDUES 227-461
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymHUMAN COAGULATION FACTOR IXA, CHRISTMAS FACTOR, PLASMA THROMBOPLASTIN COMPONENT, PTC

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit ELS

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU S:70 , ASN S:72 , GLU S:75 , GLU S:77 , GLU S:80 , HOH S:2054BINDING SITE FOR RESIDUE CA S 1246

(-) SS Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1E:88 -E:99
2E:95 -E:109
3E:111 -E:124
4E:132 -S:122
5S:42 -S:58
6S:168 -S:182
7S:191 -S:220

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2WPM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (95, 95)

Asymmetric/Biological Unit (95, 95)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_006573V227DFA9_HUMANDisease (HEMB)  ---SV16D
02UniProtVAR_017310V227FFA9_HUMANDisease (HEMB)137852242SV16F
03UniProtVAR_017311V228FFA9_HUMANDisease (HEMB)137852243SV17F
04UniProtVAR_006574V228LFA9_HUMANDisease (HEMB)137852243SV17L
05UniProtVAR_006575Q241HFA9_HUMANDisease (HEMB)  ---SQ30H
06UniProtVAR_017352Q241KFA9_HUMANDisease (HEMB)  ---SQ30K
07UniProtVAR_017312C252SFA9_HUMANDisease (HEMB)267606792SC42S
08UniProtVAR_017353C252YFA9_HUMANDisease (HEMB)  ---SC42Y
09UniProtVAR_006576G253EFA9_HUMANDisease (HEMB)  ---SG43E
10UniProtVAR_006577G253RFA9_HUMANDisease (HEMB)  ---SG43R
11UniProtVAR_006578A265TFA9_HUMANDisease (HEMB)  ---SA55T
12UniProtVAR_017313C268WFA9_HUMANDisease (HEMB)137852246SC58W
13UniProtVAR_006579A279TFA9_HUMANDisease (HEMB)137852247SA66T
14UniProtVAR_006580N283DFA9_HUMANDisease (HEMB)  ---SN72D
15UniProtVAR_017314E291VFA9_HUMANDisease (HEMB)137852279SE80V
16UniProtVAR_006582R294GFA9_HUMANDisease (HEMB)  ---SR83G
17UniProtVAR_006583R294QFA9_HUMANDisease (HEMB)137852249SR83Q
18UniProtVAR_073980V296MFA9_HUMANUnclassified (HEMB)  ---SV85M
19UniProtVAR_017349C134YFA9_HUMANDisease (HEMB)  ---EC88Y
20UniProtVAR_006560I136TFA9_HUMANDisease (HEMB)  ---EI90T
21UniProtVAR_006584H302RFA9_HUMANDisease (HEMB)  ---SH91R
22UniProtVAR_073978N138HFA9_HUMANUnclassified (HEMB)  ---EN92H
23UniProtVAR_006561G139DFA9_HUMANDisease (HEMB)  ---EG93D
24UniProtVAR_006562G139SFA9_HUMANDisease (HEMB)  ---EG93S
25UniProtVAR_017315N306SFA9_HUMANDisease (HEMB)137852251SN95S
26UniProtVAR_006585I316FFA9_HUMANDisease (HEMB)  ---SI103F
27UniProtVAR_017354L318RFA9_HUMANDisease (HEMB)  ---SL105R
28UniProtVAR_006586L321QFA9_HUMANDisease (HEMB)  ---SL108Q
29UniProtVAR_006563C155FFA9_HUMANDisease (HEMB)  ---EC109F
30UniProtVAR_006564G160EFA9_HUMANDisease (HEMB)  ---EG114E
31UniProtVAR_073981N328KFA9_HUMANUnclassified (HEMB)  ---SN115K
32UniProtVAR_073982N328YFA9_HUMANDisease (HEMB)  ---SN115Y
33UniProtVAR_006587P333HFA9_HUMANDisease (HEMB)  ---SP120H
34UniProtVAR_017355P333TFA9_HUMANDisease (HEMB)  ---SP120T
35UniProtVAR_006565Q167HFA9_HUMANDisease (HEMB)  ---EQ121H
36UniProtVAR_017350S169CFA9_HUMANDisease (HEMB)  ---ES123C
37UniProtVAR_017351C170FFA9_HUMANDisease (HEMB)  ---EC124F
38UniProtVAR_006588T342KFA9_HUMANDisease (HEMB)  ---ST127K
39UniProtVAR_006589T342MFA9_HUMANDisease (HEMB)137852254ST127M
40UniProtVAR_017356I344LFA9_HUMANDisease (HEMB)  ---SI129L
41UniProtVAR_006566C178RFA9_HUMANDisease (HEMB)  ---EC132R
42UniProtVAR_006567C178WFA9_HUMANDisease (HEMB)  ---EC132W
43UniProtVAR_006590G351DFA9_HUMANDisease (HEMB)  ---SG136D
44UniProtVAR_006591W356CFA9_HUMANDisease (HEMB)  ---SW141C
45UniProtVAR_006592G357EFA9_HUMANDisease (HEMB)137852275SG142E
46UniProtVAR_017316G357RFA9_HUMANDisease (HEMB)137852257SG142R
47UniProtVAR_006569R191CFA9_HUMANDisease (HEMB)137852237ER145C
48UniProtVAR_006568R191HFA9_HUMANDisease (HEMB)137852238ER145H
49UniProtVAR_006593K362EFA9_HUMANDisease (HEMB)  ---SK148E
50UniProtVAR_006594G363WFA9_HUMANDisease (HEMB)  ---SG149W
51UniProtVAR_006595A366DFA9_HUMANDisease (HEMB)  ---SA152D
52UniProtVAR_006596R379GFA9_HUMANDisease (HEMB)  ---SR165G
53UniProtVAR_006597R379QFA9_HUMANDisease (HEMB)137852259SR165Q
54UniProtVAR_006598C382YFA9_HUMANDisease (HEMB)  ---SC168Y
55UniProtVAR_017358L383FFA9_HUMANDisease (HEMB)  ---SL169F
56UniProtVAR_017357L383IFA9_HUMANDisease (HEMB)  ---SL169I
57UniProtVAR_062999R384LFA9_HUMANDisease (THPH8)137852283SR170L
58UniProtVAR_006599K387EFA9_HUMANDisease (HEMB)  ---SK173E
59UniProtVAR_006600I390FFA9_HUMANDisease (HEMB)  ---SI176F
60UniProtVAR_006601M394KFA9_HUMANDisease (HEMB)  ---SM180K
61UniProtVAR_017359F395IFA9_HUMANDisease (HEMB)  ---SF181I
62UniProtVAR_017360F395LFA9_HUMANDisease (HEMB)  ---SF181L
63UniProtVAR_017361C396FFA9_HUMANDisease (HEMB)  ---SC182F
64UniProtVAR_006602C396SFA9_HUMANDisease (HEMB)137852273SC182S
65UniProtVAR_017317A397PFA9_HUMANDisease (HEMB)137852281SA183P
66UniProtVAR_017362C407RFA9_HUMANDisease (HEMB)  ---SC191R
67UniProtVAR_006604C407SFA9_HUMANDisease (HEMB)  ---SC191S
68UniProtVAR_017318D410HFA9_HUMANDisease (HEMB)137852278SD194H
69UniProtVAR_017320S411GFA9_HUMANDisease (HEMB)137852277SS195G
70UniProtVAR_017319S411IFA9_HUMANDisease (HEMB)137852276SS195I
71UniProtVAR_017363G412EFA9_HUMANDisease (HEMB)  ---SG196E
72UniProtVAR_006605G413RFA9_HUMANDisease (HEMB)  ---SG197R
73UniProtVAR_017321P414TFA9_HUMANDisease (HEMB)137852265SP198T
74UniProtVAR_006606V419EFA9_HUMANDisease (HEMB)137852280SV203E
75UniProtVAR_006607F424VFA9_HUMANDisease (HEMB)  ---SF208V
76UniProtVAR_006608T426PFA9_HUMANDisease (HEMB)  ---ST210P
77UniProtVAR_006609S430TFA9_HUMANDisease (HEMB)  ---SS214T
78UniProtVAR_006610W431GFA9_HUMANDisease (HEMB)  ---SW215G
79UniProtVAR_006611W431RFA9_HUMANDisease (HEMB)  ---SW215R
80UniProtVAR_006612G432SFA9_HUMANDisease (HEMB)  ---SG216S
81UniProtVAR_006613G432VFA9_HUMANDisease (HEMB)  ---SG216V
82UniProtVAR_006614E433AFA9_HUMANDisease (HEMB)  ---SE217A
83UniProtVAR_006615E433KFA9_HUMANDisease (HEMB)767828752SE217K
84UniProtVAR_017364C435YFA9_HUMANDisease (HEMB)  ---SC220Y
85UniProtVAR_006616A436VFA9_HUMANDisease (HEMB)137852266SA221V
86UniProtVAR_017365G442EFA9_HUMANDisease (HEMB)  ---SG226E
87UniProtVAR_017322G442RFA9_HUMANDisease (HEMB)137852267SG226R
88UniProtVAR_017323I443TFA9_HUMANDisease (HEMB)137852268SI227T
89UniProtVAR_006618R449QFA9_HUMANDisease (HEMB)143018900SR233Q
90UniProtVAR_006619R449WFA9_HUMANDisease (HEMB)757996262SR233W
91UniProtVAR_006620Y450CFA9_HUMANDisease (HEMB)  ---SY234C
92UniProtVAR_017324W453RFA9_HUMANDisease (HEMB)137852269SW237R
93UniProtVAR_006621I454TFA9_HUMANDisease (HEMB)  ---SI238T
94UniProtVAR_014308T461PFA9_HUMANPolymorphism4149751ST245P
95UniProtVAR_006603R404TFA9_HUMANDisease (HEMB)  ---SR188AT

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (4, 4)

Asymmetric/Biological Unit (4, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EGF_2PS01186 EGF-like domain signature 2.FA9_HUMAN117-128
155-170
  1-
E:109-124
2TRYPSIN_DOMPS50240 Serine proteases, trypsin domain profile.FA9_HUMAN227-459  1S:16-243
3TRYPSIN_HISPS00134 Serine proteases, trypsin family, histidine active site.FA9_HUMAN263-268  1S:53-58
4TRYPSIN_SERPS00135 Serine proteases, trypsin family, serine active site.FA9_HUMAN405-416  1S:189-200

(-) Exons   (4, 5)

Asymmetric/Biological Unit (4, 5)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1bENST000002180991bENSE00002195519X:138612917-13861301195FA9_HUMAN1-30300--
1.2bENST000002180992bENSE00000677287X:138619169-138619332164FA9_HUMAN30-84550--
1.3ENST000002180993ENSE00001173335X:138619521-13861954525FA9_HUMAN85-9390--
1.4aENST000002180994aENSE00001173327X:138623235-138623348114FA9_HUMAN93-131390--
1.5bENST000002180995bENSE00001173320X:138630522-138630650129FA9_HUMAN131-174441E:87-128
-
42
-
1.6ENST000002180996ENSE00001173315X:138633221-138633423203FA9_HUMAN174-241682E:128-145
S:16-30
18
15
1.7ENST000002180997ENSE00001173311X:138642900-138643014115FA9_HUMAN242-280391-
S:31-69 (gaps)
-
42
1.8bENST000002180998bENSE00001029145X:138643683-1386456171935FA9_HUMAN280-4611821-
S:69-245 (gaps)
-
184

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain E from PDB  Type:PROTEIN  Length:59
 aligned with FA9_HUMAN | P00740 from UniProtKB/Swiss-Prot  Length:461

    Alignment length:59
                                   142       152       162       172       182         
           FA9_HUMAN    133 TCNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPFPCGRVSVSQTSKLTR  191
               SCOP domains d2wpme_ E: automated matches                                SCOP domains
               CATH domains 2wpmE00 E:87-145 Laminin                                    CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhh..eeeee...eeeee....eee......eee................... Sec.struct. author
             SAPs(SNPs) (1) -Y-T-HD---------------F----E------H-CF-------R------------C SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------S--------------------------------------W------------H SAPs(SNPs) (2)
                PROSITE (1) ----------------------EGF_2           --------------------- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.5b  PDB: E:87-128 UniProt: 131-174 ----------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------Exon 1.6           Transcript 1 (2)
                2wpm E   87 TCNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPFPCGRVSVSQTSKLTR  145
                                    96       106       116       126       136         

Chain L from PDB  Type:PROTEIN  Length:3
                                    
               SCOP domains --- SCOP domains
               CATH domains --- CATH domains
               Pfam domains --- Pfam domains
         Sec.struct. author ... Sec.struct. author
                 SAPs(SNPs) --- SAPs(SNPs)
                    PROSITE --- PROSITE
                 Transcript --- Transcript
                2wpm L    1 EGR    3

Chain S from PDB  Type:PROTEIN  Length:235
 aligned with FA9_HUMAN | P00740 from UniProtKB/Swiss-Prot  Length:461

    Alignment length:235
                                   236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456     
           FA9_HUMAN    227 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKITVVAGEHNIEETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTIYNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTKLT  461
               SCOP domains d2wpms_ S: automated matches                                                                                                                                                                                                                SCOP domains
               CATH domains 2wpmS01     2wpmS02 S:28-120,S:233-245 Trypsin-like serine proteases                                       2wpmS01 S:16-27,S:121-232 Trypsin-like serine proteases                                                            2wpmS02       CATH domains
               Pfam domains Trypsin-2wpmS01 S:16-238                                                                                                                                                                                                            ------- Pfam domains
         Sec.struct. author ....ee........eeeee......eeeeeee..eeeehhhhh......eeee............eeeeeeeeee...............eeeee................hhhhhhhhhh..eeeeee..............eeeeee..hhhhhhhhh.......eeee................eeeeee..eeeeeeeeee..........eeeee...hhhhhhhhh... Sec.struct. author
             SAPs(SNPs) (1) DF------------H----------SE-----------T--W----------T---D-------V--G-M-----R---S---------F-R--Q------K----H--------K-L------D----CE----EW--D------------G--YFL--E--F---KIFP------T--R--HGERT----E----V-P---TGSA-YV-----ET-----QC--RT------P SAPs(SNPs) (1)
             SAPs(SNPs) (2) FL------------K----------YR----------------------------------------Q---------------------------------Y----T--------M--------------R---------------------Q---I-----------LS----------S---I-------------------RVK--------R------W------------ SAPs(SNPs) (2)
                PROSITE (1) TRYPSIN_DOM  PDB: S:16-243 UniProt: 227-459                                                                                                                                                                                              -- PROSITE (1)
                PROSITE (2) ------------------------------------TRYPSI----------------------------------------------------------------------------------------------------------------------------------------TRYPSIN_SER --------------------------------------------- PROSITE (2)
           Transcript 1 (1) ---------------Exon 1.7  PDB: S:31-69 (gaps)          ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) Exon 1.6       --------------------------------------Exon 1.8b  PDB: S:69-245 (gaps) UniProt: 280-461                                                                                                                                       Transcript 1 (2)
                2wpm S   16 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKITVVAGEHNIEETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRAALVLQYLRVPLVDRATCLRSTKFTITNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTKLT  245
                                    25        35||      46        56     || 64 |||    75        85        95   ||  103       113       123   ||  131       141   ||  152       162       172       182  |    190       200       210      |221|      230       240     
                                               36|                     61A|  65A||                           98A|                         126A|                145|                                  184A 188A                          217|  |                        
                                                38                      61B    66|                            98B                          126B                 147                                                                      219  |                        
                                                                                69                                                                                                                                                         221A                        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit

(-) CATH Domains  (2, 3)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit

(-) Gene Ontology  (22, 22)

Asymmetric/Biological Unit(hide GO term definitions)
Chain E,S   (FA9_HUMAN | P00740)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0004175    endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0004252    serine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0008236    serine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
    GO:0006888    ER to Golgi vesicle-mediated transport    The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
    GO:0007596    blood coagulation    The sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers.
    GO:0007598    blood coagulation, extrinsic pathway    A protein activation cascade that contributes to blood coagulation and consists of the self-limited process linking exposure and activation of tissue factor to the activation of clotting factor X.
    GO:0007597    blood coagulation, intrinsic pathway    A protein activation cascade that contributes to blood coagulation and consists of the interactions among high molecular weight kininogen, prekallikrein, and factor XII that lead to the activation of clotting factor X.
    GO:0007599    hemostasis    The stopping of bleeding (loss of body fluid) or the arrest of the circulation to an organ or part.
    GO:0017187    peptidyl-glutamic acid carboxylation    The gamma-carboxylation of peptidyl-glutamic acid; catalyzed by the vitamin K dependent gamma-glutamyl carboxylase.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0006465    signal peptide processing    The proteolytic removal of a signal peptide from a protein during or after transport to a specific location in the cell.
    GO:0031638    zymogen activation    The proteolytic processing of an inactive enzyme to an active form.
cellular component
    GO:0005796    Golgi lumen    The volume enclosed by the membranes of any cisterna or subcompartment of the Golgi apparatus, including the cis- and trans-Golgi networks.
    GO:0005788    endoplasmic reticulum lumen    The volume enclosed by the membranes of the endoplasmic reticulum.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FA9_HUMAN | P007401cfh 1cfi 1edm 1ixa 1mgx 1nl0 1rfn 2wph 2wpi 2wpj 2wpk 2wpl 3kcg 3lc3 3lc5 4wm0 4wma 4wmb 4wmi 4wmk 4wn2 4wnh 4yzu 4z0k 4zae 5egm 5f84 5f85 5f86 5jb8 5jb9 5jba 5jbb 5jbc 5tno 5tnt

(-) Related Entries Specified in the PDB File

1cfh COAGULATION FACTOR IX (THE GLA AND AROMATIC AMINO ACID STACK DOMAINS FROM RESIDUES 1 - 47) (NMR, 15 STRUCTURES)
1cfi NMR STRUCTURE OF CALCIUM ION-BOUND GAMMA- CARBOXY-GLUTAMIC ACID- RICH DOMAIN OF FACTOR IX
1edm EPIDERMAL GROWTH FACTOR-LIKE DOMAIN FROM HUMAN FACTOR IX
1ixa EGF-LIKE MODULE OF HUMAN FACTOR IX (NMR, MINIMIZED AVERAGE STRUCTURE)
1mgx COAGULATION FACTOR, MG(II), NMR, 7 STRUCTURES (BACKBONE ATOMS ONLY)
1nl0 CRYSTAL STRUCTURE OF HUMAN FACTOR IX GLA DOMAIN IN COMPLEXOF AN INHIBITORY ANTIBODY, 10C12 10C12
1rfn HUMAN COAGULATION FACTOR IXA IN COMPLEX WITH P-AMINO BENZAMIDINE
2wph FACTOR IXA SUPERACTIVE TRIPLE MUTANT
2wpi FACTOR IXA SUPERACTIVE DOUBLE MUTANT
2wpj FACTOR IXA SUPERACTIVE TRIPLE MUTANT, NACL-SOAKED
2wpk FACTOR IXA SUPERACTIVE TRIPLE MUTANT, ETHYLENE GLYCOL-SOAKED
2wpl FACTOR IXA SUPERACTIVE TRIPLE MUTANT, EDTA-SOAKED