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(-) Description

Title :  HUMAN COAGULATION FACTOR IXA IN COMPLEX WITH P-AMINO BENZAMIDINE
 
Authors :  K. -P. Hopfner, A. Lang, A. Karcher, K. Sichler, E. Kopetzki, H. Brandstetter, R. Huber, W. Bode, R. A. Engh
Date :  19 Apr 99  (Deposition) - 01 Sep 99  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Serine Proteinase, Blood Coagulation, Coagulation Factor (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  K. P. Hopfner, A. Lang, A. Karcher, K. Sichler, E. Kopetzki, H. Brandstetter, R. Huber, W. Bode, R. A. Engh
Coagulation Factor Ixa: The Relaxed Conformation Of Tyr99 Blocks Substrate Binding.
Structure Fold. Des. V. 7 989 1999
PubMed-ID: 10467148  |  Reference-DOI: 10.1016/S0969-2126(99)80125-7
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN (COAGULATION FACTOR IX)
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainUT5600
    Expression System Taxid562
    FragmentFRAGMENT EGF2-CATALYTIC DOMAIN
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
 
Molecule 2 - PROTEIN (COAGULATION FACTOR IX)
    ChainsB
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainUT5600
    Expression System Taxid562
    FragmentFRAGMENT EGF2-CATALYTIC DOMAIN
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
2PBZ1Ligand/IonP-AMINO BENZAMIDINE
3TBU1Ligand/IonTERTIARY-BUTYL ALCOHOL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:70 , ASN A:72 , GLU A:75 , GLU A:77 , GLU A:80BINDING SITE FOR RESIDUE CA A 500
2AC2SOFTWAREASP A:189 , SER A:190 , CYS A:191 , GLN A:192 , SER A:195 , TRP A:215 , GLY A:216 , GLU A:219 , GLY A:226BINDING SITE FOR RESIDUE PBZ A 501
3AC3SOFTWAREARG A:143 , SER A:151 , GLN A:192 , GLY A:193BINDING SITE FOR RESIDUE TBU A 502

(-) SS Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1A:42 -A:58
2A:122 -B:132
3A:168 -A:182
4A:191 -A:220
5B:88 -B:99
6B:95 -B:109
7B:111 -B:124

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1RFN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (93, 93)

Asymmetric/Biological Unit (93, 93)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_006573V227DFA9_HUMANDisease (HEMB)  ---AV16D
02UniProtVAR_017310V227FFA9_HUMANDisease (HEMB)137852242AV16F
03UniProtVAR_017311V228FFA9_HUMANDisease (HEMB)137852243AV17F
04UniProtVAR_006574V228LFA9_HUMANDisease (HEMB)137852243AV17L
05UniProtVAR_006575Q241HFA9_HUMANDisease (HEMB)  ---AQ30H
06UniProtVAR_017352Q241KFA9_HUMANDisease (HEMB)  ---AQ30K
07UniProtVAR_017312C252SFA9_HUMANDisease (HEMB)267606792AC42S
08UniProtVAR_017353C252YFA9_HUMANDisease (HEMB)  ---AC42Y
09UniProtVAR_006576G253EFA9_HUMANDisease (HEMB)  ---AG43E
10UniProtVAR_006577G253RFA9_HUMANDisease (HEMB)  ---AG43R
11UniProtVAR_006578A265TFA9_HUMANDisease (HEMB)  ---AA55T
12UniProtVAR_017313C268WFA9_HUMANDisease (HEMB)137852246AC58W
13UniProtVAR_006579A279TFA9_HUMANDisease (HEMB)137852247AA68T
14UniProtVAR_006580N283DFA9_HUMANDisease (HEMB)  ---AN72D
15UniProtVAR_017314E291VFA9_HUMANDisease (HEMB)137852279AE80V
16UniProtVAR_006582R294GFA9_HUMANDisease (HEMB)  ---AR83G
17UniProtVAR_006583R294QFA9_HUMANDisease (HEMB)137852249AR83Q
18UniProtVAR_073980V296MFA9_HUMANUnclassified (HEMB)  ---AV85M
19UniProtVAR_017349C134YFA9_HUMANDisease (HEMB)  ---BC88Y
20UniProtVAR_006560I136TFA9_HUMANDisease (HEMB)  ---BI90T
21UniProtVAR_006584H302RFA9_HUMANDisease (HEMB)  ---AH91R
22UniProtVAR_073978N138HFA9_HUMANUnclassified (HEMB)  ---BN92H
23UniProtVAR_006561G139DFA9_HUMANDisease (HEMB)  ---BG93D
24UniProtVAR_006562G139SFA9_HUMANDisease (HEMB)  ---BG93S
25UniProtVAR_017315N306SFA9_HUMANDisease (HEMB)137852251AN95S
26UniProtVAR_006585I316FFA9_HUMANDisease (HEMB)  ---AI103F
27UniProtVAR_017354L318RFA9_HUMANDisease (HEMB)  ---AL105R
28UniProtVAR_006586L321QFA9_HUMANDisease (HEMB)  ---AL108Q
29UniProtVAR_006563C155FFA9_HUMANDisease (HEMB)  ---BC109F
30UniProtVAR_006564G160EFA9_HUMANDisease (HEMB)  ---BG114E
31UniProtVAR_073981N328KFA9_HUMANUnclassified (HEMB)  ---AN115K
32UniProtVAR_073982N328YFA9_HUMANDisease (HEMB)  ---AN115Y
33UniProtVAR_006587P333HFA9_HUMANDisease (HEMB)  ---AP120H
34UniProtVAR_017355P333TFA9_HUMANDisease (HEMB)  ---AP120T
35UniProtVAR_006565Q167HFA9_HUMANDisease (HEMB)  ---BQ121H
36UniProtVAR_017350S169CFA9_HUMANDisease (HEMB)  ---BS123C
37UniProtVAR_017351C170FFA9_HUMANDisease (HEMB)  ---BC124F
38UniProtVAR_006588T342KFA9_HUMANDisease (HEMB)  ---AT129K
39UniProtVAR_006589T342MFA9_HUMANDisease (HEMB)137852254AT129M
40UniProtVAR_006566C178RFA9_HUMANDisease (HEMB)  ---BC132R
41UniProtVAR_006567C178WFA9_HUMANDisease (HEMB)  ---BC132W
42UniProtVAR_006590G351DFA9_HUMANDisease (HEMB)  ---AG136D
43UniProtVAR_006591W356CFA9_HUMANDisease (HEMB)  ---AW141C
44UniProtVAR_006592G357EFA9_HUMANDisease (HEMB)137852275AG142E
45UniProtVAR_017316G357RFA9_HUMANDisease (HEMB)137852257AG142R
46UniProtVAR_006593K362EFA9_HUMANDisease (HEMB)  ---AK148E
47UniProtVAR_006594G363WFA9_HUMANDisease (HEMB)  ---AG149W
48UniProtVAR_006595A366DFA9_HUMANDisease (HEMB)  ---AA152D
49UniProtVAR_006596R379GFA9_HUMANDisease (HEMB)  ---AR165G
50UniProtVAR_006597R379QFA9_HUMANDisease (HEMB)137852259AR165Q
51UniProtVAR_006598C382YFA9_HUMANDisease (HEMB)  ---AC168Y
52UniProtVAR_017358L383FFA9_HUMANDisease (HEMB)  ---AL169F
53UniProtVAR_017357L383IFA9_HUMANDisease (HEMB)  ---AL169I
54UniProtVAR_062999R384LFA9_HUMANDisease (THPH8)137852283AR170L
55UniProtVAR_006599K387EFA9_HUMANDisease (HEMB)  ---AK173E
56UniProtVAR_006600I390FFA9_HUMANDisease (HEMB)  ---AI176F
57UniProtVAR_006601M394KFA9_HUMANDisease (HEMB)  ---AM180K
58UniProtVAR_017359F395IFA9_HUMANDisease (HEMB)  ---AF181I
59UniProtVAR_017360F395LFA9_HUMANDisease (HEMB)  ---AF181L
60UniProtVAR_017361C396FFA9_HUMANDisease (HEMB)  ---AC182F
61UniProtVAR_006602C396SFA9_HUMANDisease (HEMB)137852273AC182S
62UniProtVAR_017317A397PFA9_HUMANDisease (HEMB)137852281AA183P
63UniProtVAR_017362C407RFA9_HUMANDisease (HEMB)  ---AC191R
64UniProtVAR_006604C407SFA9_HUMANDisease (HEMB)  ---AC191S
65UniProtVAR_017318D410HFA9_HUMANDisease (HEMB)137852278AD194H
66UniProtVAR_017320S411GFA9_HUMANDisease (HEMB)137852277AS195G
67UniProtVAR_017319S411IFA9_HUMANDisease (HEMB)137852276AS195I
68UniProtVAR_017363G412EFA9_HUMANDisease (HEMB)  ---AG196E
69UniProtVAR_006605G413RFA9_HUMANDisease (HEMB)  ---AG197R
70UniProtVAR_017321P414TFA9_HUMANDisease (HEMB)137852265AP198T
71UniProtVAR_006606V419EFA9_HUMANDisease (HEMB)137852280AV203E
72UniProtVAR_006607F424VFA9_HUMANDisease (HEMB)  ---AF208V
73UniProtVAR_006608T426PFA9_HUMANDisease (HEMB)  ---AT210P
74UniProtVAR_006609S430TFA9_HUMANDisease (HEMB)  ---AS214T
75UniProtVAR_006610W431GFA9_HUMANDisease (HEMB)  ---AW215G
76UniProtVAR_006611W431RFA9_HUMANDisease (HEMB)  ---AW215R
77UniProtVAR_006612G432SFA9_HUMANDisease (HEMB)  ---AG216S
78UniProtVAR_006613G432VFA9_HUMANDisease (HEMB)  ---AG216V
79UniProtVAR_006614E433AFA9_HUMANDisease (HEMB)  ---AE217A
80UniProtVAR_006615E433KFA9_HUMANDisease (HEMB)767828752AE217K
81UniProtVAR_017364C435YFA9_HUMANDisease (HEMB)  ---AC220Y
82UniProtVAR_006616A436VFA9_HUMANDisease (HEMB)137852266AA221V
83UniProtVAR_017365G442EFA9_HUMANDisease (HEMB)  ---AG226E
84UniProtVAR_017322G442RFA9_HUMANDisease (HEMB)137852267AG226R
85UniProtVAR_017323I443TFA9_HUMANDisease (HEMB)137852268AI227T
86UniProtVAR_006618R449QFA9_HUMANDisease (HEMB)143018900AR233Q
87UniProtVAR_006619R449WFA9_HUMANDisease (HEMB)757996262AR233W
88UniProtVAR_006620Y450CFA9_HUMANDisease (HEMB)  ---AY234C
89UniProtVAR_017324W453RFA9_HUMANDisease (HEMB)137852269AW237R
90UniProtVAR_006621I454TFA9_HUMANDisease (HEMB)  ---AI238T
91UniProtVAR_014308T461PFA9_HUMANPolymorphism4149751AT245P
92UniProtVAR_017356I344LFA9_HUMANDisease (HEMB)  ---AI129BL
93UniProtVAR_006603R404TFA9_HUMANDisease (HEMB)  ---AR188AT

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (4, 4)

Asymmetric/Biological Unit (4, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EGF_2PS01186 EGF-like domain signature 2.FA9_HUMAN117-128
155-170
  1-
B:109-124
2TRYPSIN_DOMPS50240 Serine proteases, trypsin domain profile.FA9_HUMAN227-459  1A:16-243
3TRYPSIN_HISPS00134 Serine proteases, trypsin family, histidine active site.FA9_HUMAN263-268  1A:53-58
4TRYPSIN_SERPS00135 Serine proteases, trypsin family, serine active site.FA9_HUMAN405-416  1A:189-200

(-) Exons   (4, 5)

Asymmetric/Biological Unit (4, 5)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1bENST000002180991bENSE00002195519X:138612917-13861301195FA9_HUMAN1-30300--
1.2bENST000002180992bENSE00000677287X:138619169-138619332164FA9_HUMAN30-84550--
1.3ENST000002180993ENSE00001173335X:138619521-13861954525FA9_HUMAN85-9390--
1.4aENST000002180994aENSE00001173327X:138623235-138623348114FA9_HUMAN93-131390--
1.5bENST000002180995bENSE00001173320X:138630522-138630650129FA9_HUMAN131-174441-
B:86-128
-
43
1.6ENST000002180996ENSE00001173315X:138633221-138633423203FA9_HUMAN174-241682A:16-30
B:128-142
15
15
1.7ENST000002180997ENSE00001173311X:138642900-138643014115FA9_HUMAN242-280391A:31-69 (gaps)
-
40
-
1.8bENST000002180998bENSE00001029145X:138643683-1386456171935FA9_HUMAN280-4611821A:69-245 (gaps)
-
184
-

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:235
 aligned with FA9_HUMAN | P00740 from UniProtKB/Swiss-Prot  Length:461

    Alignment length:235
                                   236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456     
           FA9_HUMAN    227 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKITVVAGEHNIEETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTIYNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTKLT  461
               SCOP domains d1rfna_ A: Coagulation factor IXa, protease domain                                                                                                                                                                                          SCOP domains
               CATH domains 1rfnA01     1rfnA02 A:28-120,A:233-245 Trypsin-like serine proteases                                       1rfnA01 A:16-27,A:121-232 Trypsin-like serine proteases                                                            1rfnA02       CATH domains
               Pfam domains Trypsin-1rfnA01 A:16-238                                                                                                                                                                                                            ------- Pfam domains
         Sec.struct. author ..............eeeee......eeeeeee..eeee.hhh.......eeee............eeeeeeeeee...............eeeee.................hhhhhhhhhh.eeeeee..............eeeeee...hhhhhhh........eeee................eeeee....eeeeeeeeee.........eeeeehhh.hhhhhhhh... Sec.struct. author
             SAPs(SNPs) (1) DF------------H----------SE-----------T--W----------T---D-------V--G-M-----R---S---------F-R--Q------K----H--------K-L------D----CE----EW--D------------G--YFL--E--F---KIFP------T--R--HGERT----E----V-P---TGSA-YV-----ET-----QC--RT------P SAPs(SNPs) (1)
             SAPs(SNPs) (2) FL------------K----------YR----------------------------------------Q---------------------------------Y----T--------M--------------R---------------------Q---I-----------LS----------S---I-------------------RVK--------R------W------------ SAPs(SNPs) (2)
                PROSITE (1) TRYPSIN_DOM  PDB: A:16-243 UniProt: 227-459                                                                                                                                                                                              -- PROSITE (1)
                PROSITE (2) ------------------------------------TRYPSI----------------------------------------------------------------------------------------------------------------------------------------TRYPSIN_SER --------------------------------------------- PROSITE (2)
           Transcript 1 (1) ---------------Exon 1.7  PDB: A:31-69 (gaps)          ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) Exon 1.6       --------------------------------------Exon 1.8b  PDB: A:69-245 (gaps) UniProt: 280-461                                                                                                                                       Transcript 1 (2)
                1rfn A   16 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKITVVAGEHNIEETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTIYNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTKLT  245
                                    25        35||      46        56    |   65        75        85        95||     103       113       123      |131       141   ||  152       162       172       182  |    190       200       210      |221|      230       240     
                                               36|                    60A                                 95A|                               129A|             145|                                  184A 188A                          217|  |                        
                                                38                                                         95B                                129B              147                                                                      219  |                        
                                                                                                                                                                                                                                           221A                        

Chain B from PDB  Type:PROTEIN  Length:57
 aligned with FA9_HUMAN | P00740 from UniProtKB/Swiss-Prot  Length:461

    Alignment length:57
                                   141       151       161       171       181       
           FA9_HUMAN    132 VTCNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPFPCGRVSVSQTSK  188
               SCOP domains d1rfnb_ B: Factor IX (IXa)                                SCOP domains
               CATH domains 1rfnB00 B:86-142 Laminin                                  CATH domains
               Pfam domains --------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh...eeee.....eeee....eee......eee................ Sec.struct. author
             SAPs(SNPs) (1) --Y-T-HD---------------F----E------H-CF-------R---------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------S--------------------------------------W---------- SAPs(SNPs) (2)
                PROSITE (1) -----------------------EGF_2           ------------------ PROSITE (1)
                PROSITE (2) --------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.5b  PDB: B:86-128 UniProt: 131-174  -------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------Exon 1.6        Transcript 1 (2)
                1rfn B   86 MTCNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPFPCGRVSVSQTSK  142
                                    95       105       115       125       135       

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit

(-) CATH Domains  (2, 3)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit

(-) Gene Ontology  (22, 22)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (FA9_HUMAN | P00740)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0004175    endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0004252    serine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0008236    serine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
    GO:0006888    ER to Golgi vesicle-mediated transport    The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
    GO:0007596    blood coagulation    The sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers.
    GO:0007598    blood coagulation, extrinsic pathway    A protein activation cascade that contributes to blood coagulation and consists of the self-limited process linking exposure and activation of tissue factor to the activation of clotting factor X.
    GO:0007597    blood coagulation, intrinsic pathway    A protein activation cascade that contributes to blood coagulation and consists of the interactions among high molecular weight kininogen, prekallikrein, and factor XII that lead to the activation of clotting factor X.
    GO:0007599    hemostasis    The stopping of bleeding (loss of body fluid) or the arrest of the circulation to an organ or part.
    GO:0017187    peptidyl-glutamic acid carboxylation    The gamma-carboxylation of peptidyl-glutamic acid; catalyzed by the vitamin K dependent gamma-glutamyl carboxylase.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0006465    signal peptide processing    The proteolytic removal of a signal peptide from a protein during or after transport to a specific location in the cell.
    GO:0031638    zymogen activation    The proteolytic processing of an inactive enzyme to an active form.
cellular component
    GO:0005796    Golgi lumen    The volume enclosed by the membranes of any cisterna or subcompartment of the Golgi apparatus, including the cis- and trans-Golgi networks.
    GO:0005788    endoplasmic reticulum lumen    The volume enclosed by the membranes of the endoplasmic reticulum.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FA9_HUMAN | P007401cfh 1cfi 1edm 1ixa 1mgx 1nl0 2wph 2wpi 2wpj 2wpk 2wpl 2wpm 3kcg 3lc3 3lc5 4wm0 4wma 4wmb 4wmi 4wmk 4wn2 4wnh 4yzu 4z0k 4zae 5egm 5f84 5f85 5f86 5jb8 5jb9 5jba 5jbb 5jbc 5tno 5tnt

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1RFN)