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(-) Description

Title :  DISCOVERY OF NOVEL AMINOBENZISOXAZOLE DERIVATIVES AS ORALLY AVAILABLE FACTOR IXA INHIBITORS
 
Authors :  I. Sakurada, T. Endo, K. Hikita, T. Hirabayashi, Y. Hosaka, Y. Kato, Y. M S. Matsumoto, T. Mizuno, H. Nagasue, T. Nishimura, S. Shimada, M. Shin K. Taguchi, K. Takeuchi, T. Yokoyama, A. Hruza, P. Reichert, T. Zhang, K. Nakao, S. Furusako
Date :  14 Oct 16  (Deposition) - 26 Apr 17  (Release) - 24 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.54
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Serine Proteinase, Blood Coagulation, Coagulation Factor, Hydrolase- 2, Hydrolase Inhibitor Complex, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. Sakurada, T. Endo, K. Hikita, T. Hirabayashi, Y. Hosaka, Y. Kato, Y. Maeda, S. Matsumoto, T. Mizuno, H. Nagasue, T. Nishimura, S. Shimada, M. Shinozaki, K. Taguchi, K. Takeuchi, T. Yokoyama, A. Hruza, P. Reichert, T. Zhang, H. B. Wood, K. Nakao, S. Furusako
Discovery Of Novel Aminobenzisoxazole Derivatives As Orally Available Factor Ixa Inhibitors.
Bioorg. Med. Chem. Lett. V. 27 2622 2017
PubMed-ID: 28408226  |  Reference-DOI: 10.1016/J.BMCL.2017.03.002

(-) Compounds

Molecule 1 - COAGULATION FACTOR IX
    Chains: A
    EC Number: 3.4.21.22
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 227-461
    Gene: F9
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CHRISTMAS FACTOR,PLASMA THROMBOPLASTIN COMPONENT,PTC
 
Molecule 2 - COAGULATION FACTOR IX
    Chains: B
    EC Number: 3.4.21.22
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 131-191
    Gene: F9
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CHRISTMAS FACTOR,PLASMA THROMBOPLASTIN COMPONENT,PTC

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
1NA1Ligand/IonSODIUM ION
2NHE2Ligand/Ion2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID
3UNL1Ligand/IonUNKNOWN LIGAND

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:70 , ASN A:72 , GLU A:75 , GLU A:77 , GLU A:80 , HOH A:403binding site for residue NA A 302
2AC2SOFTWAREASP A:21 , LYS A:132 , PHE A:145 , ALA A:152 , LEU A:153 , VAL A:154 , HOH A:497 , HOH A:545 , HOH A:552 , HOH B:250binding site for residue NHE A 303
3AC3SOFTWAREVAL A:38 , ASP A:39 , ALA A:40 , PHE A:41 , ARG A:143 , SER A:151 , ASP A:164 , ARG A:165 , ALA A:166 , GLN A:192 , HOH A:443 , HOH A:549binding site for residue NHE A 304

(-) SS Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1A:42 -A:58
2A:122 -B:132
3A:168 -A:182
4A:191 -A:220
5B:88 -B:99
6B:95 -B:109
7B:111 -B:124

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5TNO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5TNO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5TNO)

(-) Exons   (0, 0)

(no "Exon" information available for 5TNO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:232
                                                                                                                                                                                                                                                                         
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee........eeeee......eeeeeee..eeeehhhhh...eeee............eeeeeeeeee...............eeeee................hhhhhhhhhhh.eeeeee..............eeeeeeeehhhhhhhh........eeee................eeeeee..eeeeeeeeee..........eeeee...hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5tno A   16 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVVKITVVAGEHNIEETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGASALVLQYLRVPLVDRATCLRSTKFTIYNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTKLT  245
                                    25        35||      46        56  ||    68        78        88       |96       106       116       126   ||  134       144||     155       165       175      184A    |  193       203       213   ||  223       233       243  
                                               36|                   59|                               95A|                               129A|             145|                                  184A 188A                          217|  |                        
                                                38                    62                                95B                                129B              147                                                                      219  |                        
                                                                                                                                                                                                                                        221A                        


Chain B from PDB  Type:PROTEIN  Length:54
                                                                                       
               SCOP domains ------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhh..eeeee...eeeee....eee......eee............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------ Transcript
                5tno B   86 VTCNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPFPCGRVSVSQ  139
                                    95       105       115       125       135
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5TNO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5TNO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5TNO)

(-) Gene Ontology  (22, 22)

Asymmetric/Biological Unit(hide GO term definitions)

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  3.4.21.22
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FA9_HUMAN | P00740: 1cfh 1cfi 1edm 1ixa 1mgx 1nl0 1rfn 2wph 2wpi 2wpj 2wpk 2wpl 2wpm 3kcg 3lc3 3lc5 4wm0 4wma 4wmb 4wmi 4wmk 4wn2 4wnh 4yzu 4z0k 4zae 5egm 5f84 5f85 5f86 5jb8 5jb9 5jba 5jbb 5jbc 5tnt

(-) Related Entries Specified in the PDB File

5tnt