Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  CANINE ADENOVIRUS 2 FIBRE HEAD IN COMPLEX WITH SIALIC ACID
 
Authors :  E. Seiradake, D. Henaff, H. Wodrich, O. Billet, M. Perreau, C. Hippert, F. Mennechet, G. Schoehn, H. Lortat-Jacob, H. Dreja, S. Ibanes, V. Kalatzis, J. P. Wang, R. W. Finberg, S. Cusack, E. J. Kremer
Date :  05 Mar 09  (Deposition) - 17 Mar 09  (Release) - 28 Dec 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,D  (1x)
Biol. Unit 2:  C,E,F  (1x)
Keywords :  Knob, Head, Fiber, Virus, Fibre, Adenovirus, Hemagglutination, Structural Protein, Red Blood Cell, Sialyl-Lactose, Cell Attachment, Erythrocyte, Sialic Acid, Fiber Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  E. Seiradake, D. Henaff, H. Wodrich, O. Billet, M. Perreau, C. Hippert, F. Mennechet, G. Schoehn, H. Lortat-Jacob, H. Dreja, S. Ibanes, V. Kalatzis, J. P. Wang, R. W. Finberg, S. Cusack, E. J. Kremer
The Cell Adhesion Molecule "Car" And Sialic Acid On Human Erythrocytes Influence Adenovirus In Vivo Biodistribution.
Plos Pathog. V. 5 00277 2009
PubMed-ID: 19119424  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1000277

(-) Compounds

Molecule 1 - FIBER PROTEIN
    ChainsA, B, C, D, E, F
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPPROEX HTB
    Expression System StrainBL21 STAR
    Expression System Taxid511693
    FragmentFIBRE HEAD, RESIDUES 358-542
    Organism ScientificCANINE ADENOVIRUS 2
    Organism Taxid10514
    SynonymCANINE ADENOVIRUS 2 FIBRE HEAD, PIV

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABCDEF
Biological Unit 1 (1x)AB D  
Biological Unit 2 (1x)  C EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 13)

Asymmetric Unit (3, 13)
No.NameCountTypeFull Name
1GAL1Ligand/IonBETA-D-GALACTOSE
2GOL6Ligand/IonGLYCEROL
3SIA6Ligand/IonO-SIALIC ACID
Biological Unit 1 (3, 7)
No.NameCountTypeFull Name
1GAL1Ligand/IonBETA-D-GALACTOSE
2GOL3Ligand/IonGLYCEROL
3SIA3Ligand/IonO-SIALIC ACID
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1GAL-1Ligand/IonBETA-D-GALACTOSE
2GOL3Ligand/IonGLYCEROL
3SIA3Ligand/IonO-SIALIC ACID

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR C:408 , GLN C:415 , SER C:416 , GLN C:417 , PHE C:418 , SER C:419 , ASN C:435 , ARG C:515 , HOH C:2026 , HOH C:2211 , HOH C:2212 , HOH C:2213 , HOH C:2215BINDING SITE FOR RESIDUE SIA C1543
02AC2SOFTWAREPRO C:369 , GLY C:370 , PRO C:371 , PHE C:386 , HOH C:2044 , HOH C:2216 , VAL F:469BINDING SITE FOR RESIDUE GOL C1544
03AC3SOFTWAREPRO A:369 , GLY A:370 , PHE A:386 , SER A:401 , HOH A:2198 , VAL D:469BINDING SITE FOR RESIDUE GOL A1543
04AC4SOFTWAREVAL A:469 , HOH A:2199 , HOH A:2200 , PRO B:369 , GLY B:370 , PHE B:386 , SER B:401BINDING SITE FOR RESIDUE GOL A1544
05AC5SOFTWAREVAL B:469 , HOH B:2097 , PRO D:369 , GLY D:370 , PRO D:371 , HOH D:2188BINDING SITE FOR RESIDUE GOL D1543
06AC6SOFTWAREVAL C:469 , PRO E:369 , GLY E:370 , PRO E:371 , PHE E:386 , HOH E:2178 , HOH E:2179BINDING SITE FOR RESIDUE GOL E1543
07AC7SOFTWAREVAL E:469 , HOH E:2098 , PRO F:369 , GLY F:370 , PHE F:386 , HOH F:2166BINDING SITE FOR RESIDUE GOL F1543
08AC8SOFTWARETYR E:408 , GLN E:415 , SER E:416 , GLN E:417 , PHE E:418 , SER E:419 , ASN E:435 , ARG E:515 , HOH E:2180 , HOH E:2181 , HOH E:2182 , HOH E:2183 , HOH E:2184BINDING SITE FOR RESIDUE SIA E1544
09AC9SOFTWARETYR F:408 , GLN F:415 , SER F:416 , GLN F:417 , PHE F:418 , SER F:419 , ASN F:435 , ARG F:515 , HOH F:2015 , HOH F:2168 , HOH F:2169 , HOH F:2170BINDING SITE FOR RESIDUE SIA F1544
10BC1SOFTWARETYR A:408 , GLN A:415 , SER A:416 , GLN A:417 , PHE A:418 , SER A:419 , ASN A:435 , ARG A:515 , HOH A:2203 , HOH A:2204 , HOH A:2205 , HOH A:2206 , HOH A:2207 , HOH A:2208 , HOH E:2156BINDING SITE FOR RESIDUE SIA A1545
11BC2SOFTWARETYR B:408 , GLN B:415 , SER B:416 , GLN B:417 , PHE B:418 , SER B:419 , ASN B:435 , ARG B:515 , HOH B:2177 , HOH B:2178 , HOH B:2179 , HOH B:2180BINDING SITE FOR RESIDUE SIA B1543
12BC3SOFTWARETYR D:408 , GLN D:415 , SER D:416 , GLN D:417 , PHE D:418 , SER D:419 , ASN D:435 , LYS D:503 , ARG D:515 , HOH D:2019 , HOH D:2131 , HOH D:2190 , HOH D:2191 , HOH D:2192 , HOH D:2193BINDING SITE FOR CHAIN D OF RESIDUES SIA D1544 AND GAL D1545

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WBV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2WBV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WBV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WBV)

(-) Exons   (0, 0)

(no "Exon" information available for 2WBV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:183
 aligned with SPIKE_ADECT | Q65914 from UniProtKB/Swiss-Prot  Length:542

    Alignment length:183
                                   369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539   
          SPIKE_ADECT   360 AAPITLWTGPGPSINGFINDTPVIRCFICLTRDSNLVTVNASFVGEGGYRIVSPTQSQFSLIMEFDQFGQLMSTGNINSTTTWGEKPWGNNTVQPRPSHTWKLCMPNREVYSTPAATISRCGLDSIAVDGAPSRSIDCMLIINKPKGVATYTLTFRFLNFNRLSGGTLFKTDVLTFTYVGENQ 542
               SCOP domains d2wbva_ A: automated matches                                                                                                                                                            SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee........eee..eeeeeeeeeeee...eeeeeeeeee.hhh.ee......eeeeeee..................ee............hhhhhhhh.........eeeeeeee........hhh.eeeeeeee........eeeeeeeehhhhh...ee.....eeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wbv A 360 AAPITLWTGPGPSINGFINDTPVIRCFICLTRDSNLVTVNASFVGEGGYRIVSPTQSQFSLIMEFDQFGQLMSTGNINSTTTWGEKPWGNNTVQPRPSHTWKLCMPNREVYSTPAATISRCGLDSIAVDGAPSRSIDCMLIINKPKGVATYTLTFRFLNFNRLSGGTLFKTDVLTFTYVGENQ 542
                                   369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539   

Chain B from PDB  Type:PROTEIN  Length:186
 aligned with SPIKE_ADECT | Q65914 from UniProtKB/Swiss-Prot  Length:542

    Alignment length:186
                                   366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536      
          SPIKE_ADECT   357 QPPAAPITLWTGPGPSINGFINDTPVIRCFICLTRDSNLVTVNASFVGEGGYRIVSPTQSQFSLIMEFDQFGQLMSTGNINSTTTWGEKPWGNNTVQPRPSHTWKLCMPNREVYSTPAATISRCGLDSIAVDGAPSRSIDCMLIINKPKGVATYTLTFRFLNFNRLSGGTLFKTDVLTFTYVGENQ 542
               SCOP domains d2wbvb_ B: automated matches                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhh.eeee........eee..eeeeeeeeeeee...eeeeeeeeee.hhh.ee......eeeeeee..................ee............hhhhhhhh.........eeeeeeee........hhh.eeeeeeee........eeeeeeeehhhhh...ee.....eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2wbv B 357 SPPAAPITLWTGPGPSINGFINDTPVIRCFICLTRDSNLVTVNASFVGEGGYRIVSPTQSQFSLIMEFDQFGQLMSTGNINSTTTWGEKPWGNNTVQPRPSHTWKLCMPNREVYSTPAATISRCGLDSIAVDGAPSRSIDCMLIINKPKGVATYTLTFRFLNFNRLSGGTLFKTDVLTFTYVGENQ 542
                                   366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536      

Chain C from PDB  Type:PROTEIN  Length:183
 aligned with SPIKE_ADECT | Q65914 from UniProtKB/Swiss-Prot  Length:542

    Alignment length:183
                                   369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539   
          SPIKE_ADECT   360 AAPITLWTGPGPSINGFINDTPVIRCFICLTRDSNLVTVNASFVGEGGYRIVSPTQSQFSLIMEFDQFGQLMSTGNINSTTTWGEKPWGNNTVQPRPSHTWKLCMPNREVYSTPAATISRCGLDSIAVDGAPSRSIDCMLIINKPKGVATYTLTFRFLNFNRLSGGTLFKTDVLTFTYVGENQ 542
               SCOP domains d2wbvc_ C: automated matches                                                                                                                                                            SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee........eee..eeeeeeeeeeee...eeeeeeeeee.hhh.ee......eeeeeee..................ee..............hhhhhh.........eeeeeeee........hhh.eeeeeeee........eeeeeeeehhhhh...ee.....eeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wbv C 360 AAPITLWTGPGPSINGFINDTPVIRCFICLTRDSNLVTVNASFVGEGGYRIVSPTQSQFSLIMEFDQFGQLMSTGNINSTTTWGEKPWGNNTVQPRPSHTWKLCMPNREVYSTPAATISRCGLDSIAVDGAPSRSIDCMLIINKPKGVATYTLTFRFLNFNRLSGGTLFKTDVLTFTYVGENQ 542
                                   369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539   

Chain D from PDB  Type:PROTEIN  Length:184
 aligned with SPIKE_ADECT | Q65914 from UniProtKB/Swiss-Prot  Length:542

    Alignment length:184
                                   368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538    
          SPIKE_ADECT   359 PAAPITLWTGPGPSINGFINDTPVIRCFICLTRDSNLVTVNASFVGEGGYRIVSPTQSQFSLIMEFDQFGQLMSTGNINSTTTWGEKPWGNNTVQPRPSHTWKLCMPNREVYSTPAATISRCGLDSIAVDGAPSRSIDCMLIINKPKGVATYTLTFRFLNFNRLSGGTLFKTDVLTFTYVGENQ 542
               SCOP domains d2wbvd_ D: automated matches                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee......eeeee..eeeeeeeeeeee...eeeeeeeeee.hhh.ee......eeeeeee..................ee............hhhhhhhh.........eeeeeeee........hhh.eeeeeeee........eeeeeeeehhhhh...ee.....eeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wbv D 359 PAAPITLWTGPGPSINGFINDTPVIRCFICLTRDSNLVTVNASFVGEGGYRIVSPTQSQFSLIMEFDQFGQLMSTGNINSTTTWGEKPWGNNTVQPRPSHTWKLCMPNREVYSTPAATISRCGLDSIAVDGAPSRSIDCMLIINKPKGVATYTLTFRFLNFNRLSGGTLFKTDVLTFTYVGENQ 542
                                   368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538    

Chain E from PDB  Type:PROTEIN  Length:182
 aligned with SPIKE_ADECT | Q65914 from UniProtKB/Swiss-Prot  Length:542

    Alignment length:182
                                   370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540  
          SPIKE_ADECT   361 APITLWTGPGPSINGFINDTPVIRCFICLTRDSNLVTVNASFVGEGGYRIVSPTQSQFSLIMEFDQFGQLMSTGNINSTTTWGEKPWGNNTVQPRPSHTWKLCMPNREVYSTPAATISRCGLDSIAVDGAPSRSIDCMLIINKPKGVATYTLTFRFLNFNRLSGGTLFKTDVLTFTYVGENQ 542
               SCOP domains d2wbve_ E: automated matches                                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee........eee..eeeeeeeeeeee...eeeeeeeeee.hhh.ee......eeeeeee..................ee............hhhhhhhh.........eeeeeeee........hhh.eeeeeeee........eeeeeeeehhhhh...ee.....eeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wbv E 361 APITLWTGPGPSINGFINDTPVIRCFICLTRDSNLVTVNASFVGEGGYRIVSPTQSQFSLIMEFDQFGQLMSTGNINSTTTWGEKPWGNNTVQPRPSHTWKLCMPNREVYSTPAATISRCGLDSIAVDGAPSRSIDCMLIINKPKGVATYTLTFRFLNFNRLSGGTLFKTDVLTFTYVGENQ 542
                                   370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540  

Chain F from PDB  Type:PROTEIN  Length:184
 aligned with SPIKE_ADECT | Q65914 from UniProtKB/Swiss-Prot  Length:542

    Alignment length:184
                                   368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538    
          SPIKE_ADECT   359 PAAPITLWTGPGPSINGFINDTPVIRCFICLTRDSNLVTVNASFVGEGGYRIVSPTQSQFSLIMEFDQFGQLMSTGNINSTTTWGEKPWGNNTVQPRPSHTWKLCMPNREVYSTPAATISRCGLDSIAVDGAPSRSIDCMLIINKPKGVATYTLTFRFLNFNRLSGGTLFKTDVLTFTYVGENQ 542
               SCOP domains d2wbvf_ F: automated matches                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee........eee..eeeeeeeeeeee...eeeeeeeeee.hhh.ee......eeeeeee..................ee............hhhhhhhh.........eeeeeeee........hhh.eeeeeeee........eeeeeeeehhhhh...ee.....eeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wbv F 359 PAAPITLWTGPGPSINGFINDTPVIRCFICLTRDSNLVTVNASFVGEGGYRIVSPTQSQFSLIMEFDQFGQLMSTGNINSTTTWGEKPWGNNTVQPRPSHTWKLCMPNREVYSTPAATISRCGLDSIAVDGAPSRSIDCMLIINKPKGVATYTLTFRFLNFNRLSGGTLFKTDVLTFTYVGENQ 542
                                   368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2WBV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2WBV)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (SPIKE_ADECT | Q65914)
biological process
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0019058    viral life cycle    A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle, decoding of genome information, translation of viral mRNA by host ribosomes, genome replication, and assembly and release of viral particles containing the genome.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0042025    host cell nucleus    A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    GAL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SIA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2wbv)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2wbv
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  SPIKE_ADECT | Q65914
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  SPIKE_ADECT | Q65914
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SPIKE_ADECT | Q659142j1k 2j2j 2w9l

(-) Related Entries Specified in the PDB File

2j1k CAV-2 FIBRE HEAD IN COMPLEX WITH CAR D1
2j2j CANINE ADENOVIRUS FIBRE HEAD AT 1.5 A RESOLUTION
2w9l CANINE ADENOVIRUS TYPE 2 FIBRE HEAD IN COMPLEX WITH SIALIC ACID
2w9w SOLUTION STRUCTURE OF JERDOSTATIN MUTANT R24K FROM TRIMERESURUS JERDONII WITH END C- TERMINAL RESIDUES N45G46 DELETED