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(-) Description

Title :  SOLUTION STRUCTURE OF JERDOSTATIN MUTANT R24K FROM TRIMERESURUS JERDONII WITH END C-TERMINAL RESIDUES N45G46 DELETED
 
Authors :  R. J. Carbajo, L. Sanz, S. Mosulen, J. J. Calvete, A. Pineda-Lucena
Date :  29 Jan 09  (Deposition) - 31 Mar 10  (Release) - 09 Nov 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (40x)
NMR Structure *:  A  (1x)
Keywords :  Venom, Toxin, Cell Adhesion, Blood Coagulation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. J. Carbajo, L. Sanz, S. Mosulen, A. Perez, C. Marcinkiewicz, A. Pineda-Lucena, J. J. Calvete
Nmr Structure And Dynamics Of Recombinant Wild-Type And Mutated Jerdostatin, A Selective Inhibitor Of Integrin Alpha1 Beta1
Proteins V. 79 2530 2011
PubMed-ID: 21656569  |  Reference-DOI: 10.1002/PROT.23076

(-) Compounds

Molecule 1 - SHORT DISINTEGRIN JERDOSTATIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET-32A
    Fragment: RESIDUES 68-108
    Mutation: YES
    Organism Common: JERDON'S PIT-VIPER
    Organism Scientific: TRIMERESURUS JERDONII
    Organism Taxid: 135726
    Synonym: JERDOSTATIN

 Structural Features

(-) Chains, Units

  1
NMR Structure (40x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2W9W)

(-) Sites  (0, 0)

(no "Site" information available for 2W9W)

(-) SS Bonds  (4, 4)

NMR Structure
No.Residues
1A:4 -A:13
2A:9 -A:32
3A:10 -A:37
4A:22 -A:39

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2W9W)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2W9W)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2W9W)

(-) Exons   (0, 0)

(no "Exon" information available for 2W9W)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:44
 aligned with DIS_PROJR | Q7ZZM2 from UniProtKB/Swiss-Prot  Length:110

    Alignment length:53
                                    65        75        85        95       105   
            DIS_PROJR    56 PMKGNTLQKLPLCTTGPCCRQCKLKPAGTTCWRTSVSSHYCTGRSCECPSYPG 108
               SCOP domains d2w         9wa_ A: automated matches                 SCOP domains
               CATH domains 2w9         wA00 A:1-44 Echistatin                    CATH domains
               Pfam domains ----------------------------------------------------- Pfam domains
         Sec.struct. author ...---------...................ee....ee.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------- Transcript
                 2w9w A   1 AMD---------CTTGPCCRQCKLKPAGTTCWKTSVSSHYCTGRSCECPSYPG  44
                              |      -  |     11        21        31        41   
                              3         4
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Small proteins (3458)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Few Secondary Structures (1120)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2W9W)

(-) Gene Ontology  (1, 1)

NMR Structure(hide GO term definitions)
Chain A   (DIS_PROJR | Q7ZZM2)
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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  2w9w
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DIS_PROJR | Q7ZZM2: 2w9o 2w9u 2w9v

(-) Related Entries Specified in the PDB File

2w9o SOLUTION STRUCTURE OF JERDOSTATIN FROM TRIMERESURUS JERDONII
2w9u SOLUTION STRUCTURE OF JERDOSTATIN MUTANT R24K FROM TRIMERESURUS JERDONII
2w9v SOLUTION STRUCTURE OF JERDOSTATIN FROM TRIMERESURUS JERDONII WITH END C-TERMINAL RESIDUES N45G46 DELETED