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Title :   CRYSTAL STRUCTURE OF THE BIRCH POLLEN ALLERGEN BET V 1L

Authors :   Z. Markovic-Housley, M. Degano, D. Lamba, E. Von Roepenack-Lahaye, S. Clemens, M. Susani, F. Ferreira, O. Scheiner, H. Breiteneder

Date :   16 Aug 00 (Deposition) - 20 Dec 02 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.97

Chains :   Asym./Biol. Unit : A

Keywords :   Alpha-Beta: 6 Anti-Parallel Beta Strands And 3 Alpha Helices. , Allergen (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Z. Markovic-Housley, M. Degano, D. Lamba, E. Von Roepenack-Lahaye, S. Clemens, M. Susani, F. Ferreira, O. Scheiner, H. Breiteneder
Crystal Structure Of A Hypoallergenic Isoform Of The Major Birch Pollen Allergen Bet V 1 And Its Likely Biological Function As A Plant Steroid Carrier
J. Mol. Biol. V. 325 123 2003
PubMed-ID: 12473456 | Reference-DOI: 10.1016/S0022-2836(02)01197-X
(for further references see the PDB file header)

Molecule 1 - MAJOR POLLEN ALLERGEN BET V 1-L
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMW 175-BET V 1L
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Common	:	EUROPEAN WHITE BIRCH
	Organism Scientific	:	BETULA PENDULA
	Organism Taxid	:	3505
	Tissue	:	POLLEN

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 2)

No.	Name	Count	Type	Full Name
1	DXC	2	Ligand/Ion	(3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OICACID

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PHE A:58 , PRO A:63 , PHE A:64 , PRO A:90 , THR A:94 , ILE A:98 , HIS A:126 , GLN A:132 , SER A:136 , DXC A:1002	BINDING SITE FOR RESIDUE DXC A 1001
2	AC2	SOFTWARE	PHE A:22 , ILE A:23 , ASP A:69 , TYR A:83 , ILE A:98 , ASN A:100 , ASN A:118 , TYR A:120 , SER A:136 , DXC A:1001 , HOH A:1075	BINDING SITE FOR RESIDUE DXC A 1002

(no "SS Bond" information available for 1FM4)

(no "Cis Peptide Bond" information available for 1FM4)

(no "SAP(SNP)/Variant" information available for 1FM4)

Asymmetric/Biological Unit (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PATHOGENESIS_BETVI	PS00451	Pathogenesis-related proteins Bet v I family signature.	BEV1L_BETPN	89-121	1	A:88-120

(no "Exon" information available for 1FM4)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:159
 aligned with BEV1L_BETPN | P43185 from UniProtKB/Swiss-Prot  Length:160

    Alignment length:159
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151         
          BEV1L_BETPN     2 GVFNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKYHTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSDAYN 160
               SCOP domains d1fm4a_ A: Major tree pollen allergen                                                                                                                           SCOP domains
               CATH domains 1fm4A00 A:1-159  [code=3.30.530.20, no name defined]                                                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee..hhhhhhhhhh.hhhhhhhhhh.....eeeeee.......eeeee........eeeeeeeeee....eeeeeeee.......eeeeeeeeeeee.....eeeeeeeeeee..........hhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------PATHOGENESIS_BETVI  PDB: A:88-120--------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fm4 A   1 GVFNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKYHTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSDAYN 159
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

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Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: TBP-like (289)

Superfamily: Bet v1-like (158)

Family: Pathogenesis-related protein 10 (PR10)-like (38)

Protein domain: Major tree pollen allergen (22)

European white birch (Betula pendula), Bet v 1-l [TaxId: 3505] (1)

d1fm4a_

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

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Topologies( (-)

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Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 (47)

Homologous Superfamily: [code=3.30.530.20, no name defined] (47)

European white birch (Betula pendula) (6)

1fm4A00

A:1-159

(no "Pfam Domain" information available for 1FM4)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (BEV1L_BETPN | P43185)

biological process
	GO:0006952	defense response	Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
	GO:0009607	response to biotic stimulus	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric/Biological Unit
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1b6f	NMR STRUCTURE OF BIRCH POLLEN ALLERGEN BET V 1A
1btv	NMR STRUCTURE OF BIRCH POLLEN ALLERGEN BET V 1A (SWS P15494 L62F CONFLICT)
1bv1	X-RAY STRUCTURE OF BIRCH POLLEN ALLERGEN BET V 1A (SWS P15494 L62F CONFLICT)

Description

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Ligands, Modified Residues, Ions (1, 2)

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