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(-) Description

Title :  STRUCTURAL BASIS OF A THIOPEPTIDE ANTIBIOTIC MULTIDRUG RESISTANCE SYSTEM FROM STREPTOMYCES LIVIDANS:NOSIHEPTIDE IN COMPLEX WITH TIPAS
 
Authors :  J. Habazettl, M. G. Allan, P. Jensen, H. Sass, S. Grzesiek
Date :  12 Aug 13  (Deposition) - 10 Dec 14  (Release) - 09 Dec 15  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (10x)
NMR Structure *:  A,B  (1x)
Keywords :  Bacterial Protein, Streptomyces Lividans, Transcriptional Activation, Tipas-Nosiheptide Complex, Transcriptional Activator-Antibiotic Complex, Protein/Thiopeptide, Multidrug Recognition, Transcription Activator-Antibiotic Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Habazettl, M. Allan, P. R. Jensen, H. J. Sass, C. J. Thompson, S. Grzesiek
Structural Basis And Dynamics Of Multidrug Recognition In A Minimal Bacterial Multidrug Resistance System
Proc. Natl. Acad. Sci. Usa V. 111 E5498 2014
PubMed-ID: 25489067  |  Reference-DOI: 10.1073/PNAS.1412070111

(-) Compounds

Molecule 1 - HTH-TYPE TRANSCRIPTIONAL ACTIVATOR TIPA
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: XL1-BLUE
    Expression System Taxid: 562
    Expression System Vector: PDS8
    Expression System Vector Type: VECTOR
    Fragment: UNP RESIDUES 110-253
    Gene: TIPA
    Organism Scientific: STREPTOMYCES LIVIDANS
    Organism Taxid: 1916
 
Molecule 2 - NOSIHEPTIDE
    Chains: B
    Engineered: YES
    Organism Scientific: STREPTOMYCES ACTUOSUS
    Organism Taxid: 1885
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
NMR Structure (10x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 10)

NMR Structure (6, 10)
No.NameCountTypeFull Name
13GL1Mod. Amino Acid(2S,4S)-2-AMINO-4-HYDROXY-PENTANEDIOIC ACID
2BB95Mod. Amino Acid(2Z)-2-AMINO-3-SULFANYLPROP-2-ENOIC ACID
3DBU1Mod. Amino Acid(2Z)-2-AMINOBUT-2-ENOIC ACID
4MH61Mod. Amino Acid3-HYDROXY-2-IMINOPROPANOIC ACID
5NH21Mod. Amino AcidAMINO GROUP
6NO11Ligand/Ion4-(HYDROXYMETHYL)-3-METHYL-1H-INDOLE-2-CARBOXYLIC ACID
NMR Structure * (6, 10)
No.NameCountTypeFull Name
13GL1Mod. Amino Acid(2S,4S)-2-AMINO-4-HYDROXY-PENTANEDIOIC ACID
2BB95Mod. Amino Acid(2Z)-2-AMINO-3-SULFANYLPROP-2-ENOIC ACID
3DBU1Mod. Amino Acid(2Z)-2-AMINOBUT-2-ENOIC ACID
4MH61Mod. Amino Acid3-HYDROXY-2-IMINOPROPANOIC ACID
5NH21Mod. Amino AcidAMINO GROUP
6NO11Ligand/Ion4-(HYDROXYMETHYL)-3-METHYL-1H-INDOLE-2-CARBOXYLIC ACID

(-) Sites  (2, 2)

NMR Structure (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:123 , SER A:148 , TRP A:160 , HIS A:204 , BB9 B:502 , THR B:503 , 3GL B:506 , CYS B:508BINDING SITE FOR RESIDUE NO1 B 601
2AC2SOFTWAREPHE A:123 , PHE A:126 , TYR A:131 , VAL A:135 , ARG A:138 , TRP A:139 , THR A:142 , ALA A:144 , TYR A:145 , ILE A:200 , HIS A:204 , MET A:211 , CYS A:214 , LEU A:215 , MET A:218 , TYR A:219 , ARG A:224 , PHE A:225 , ASN A:228 , ILE A:229 , NO1 B:601BINDING SITE FOR CHAIN B OF NOSIHEPTIDE

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2MC0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2MC0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2MC0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2MC0)

(-) Exons   (0, 0)

(no "Exon" information available for 2MC0)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:143
 aligned with TIPA_STRLI | P0A4T9 from UniProtKB/Swiss-Prot  Length:253

    Alignment length:143
                                   120       130       140       150       160       170       180       190       200       210       220       230       240       250   
           TIPA_STRLI   111 GINLTPEEKFEVFGDFDPDQYEEEVRERWGNTDAYRQSKEKTASYTKEDWQRIQDEADELTRRFVALMDAGEPADSEGAMDAAEDHRQGIARNHYDCGYEMHTCLGEMYVSDERFTRNIDAAKPGLAAYMRDAILANAVRHTP 253
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhh...hhhhhhhhhhhhh..hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh.....hhhhhhhhhhh...hhhhhhhhhh....hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2mc0 A 111 GINLTPEEKFEVFGDFDPDQYEEEVRERWGNTDAYRQSKEKTASYTKEDWQRIQDEADELTRRFVALMDAGEPADSEGAMDAAEDHRQGIARNHYDCGYEMHTCLGEMYVSDERFTRNIDAAKPGLAAYMRDAILANAVRHTP 253
                                   120       130       140       150       160       170       180       190       200       210       220       230       240       250   


Chain B from PDB  Type:PROTEIN  Length:13
                                             
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author ............. Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                 2mc0 B 501 ScTtcecCcscAx 513
                             | ||||510| |
                           502-BB9| ||| |
                             504-DBU||| |
                              505-BB9|| |
                               506-3GL| |
                                507-BB9 |
                                  509-BB9
                                   510-MH6
                                    511-BB9
                                      513-NH2
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2MC0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2MC0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2MC0)

(-) Gene Ontology  (3, 3)

NMR Structure(hide GO term definitions)
Chain A   (TIPA_STRLI | P0A4T9)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
biological process
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TIPA_STRLI | P0A4T9: 1ny9 2mbz 2vz4

(-) Related Entries Specified in the PDB File

1ny9 APO TIPAS
2mbz TIPAS IN COMPLEX WITH THE ANTIBIOTIC PROMOTHIOCIN A RELATED ID: 19421 RELATED DB: BMRB CHEMICAL SHIFTS OF TIPAS IN COMPLEX WITH THE ANTIBIOTIC PROMOTHIOCIN A RELATED ID: 19422 RELATED DB: BMRB