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(-) Description

Title :  ANTIBIOTIC BINDING DOMAIN OF A TIPA-CLASS MULTIDRUG RESISTANCE TRANSCRIPTIONAL REGULATOR
 
Authors :  J. D. Kahmann, H. J. Sass, M. G. Allan, H. Seto, C. J. Thompson, S. Grzesiek
Date :  12 Feb 03  (Deposition) - 15 Apr 03  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
Keywords :  All Alpha, Globin Like, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. D. Kahmann, H. J. Sass, M. G. Allan, H. Seto, C. J. Thompson, S. Grzesiek
Structural Basis For Antibiotic Recognition By The Tipa-Class Of Multidrug-Resistance Transcriptional Regulators
Embo J. V. 22 1824 2003
PubMed-ID: 12682015  |  Reference-DOI: 10.1093/EMBOJ/CDG181
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TRANSCRIPTIONAL ACTIVATOR TIPA-S
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PREP4 AND PDS8
    Expression System Strain: XL-1 BLUE CELLS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: ANTIBIOTIC BINDING DOMAIN
    Gene: TIPA
    Organism Scientific: STREPTOMYCES LIVIDANS
    Organism Taxid: 1916

 Structural Features

(-) Chains, Units

  
NMR Structure (10x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1NY9)

(-) Sites  (0, 0)

(no "Site" information available for 1NY9)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1NY9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1NY9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1NY9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1NY9)

(-) Exons   (0, 0)

(no "Exon" information available for 1NY9)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:94
 aligned with TIPA_STRLI | P0A4T9 from UniProtKB/Swiss-Prot  Length:253

    Alignment length:94
                                   169       179       189       199       209       219       229       239       249    
           TIPA_STRLI   160 WQRIQDEADELTRRFVALMDAGEPADSEGAMDAAEDHRQGIARNHYDCGYEMHTCLGEMYVSDERFTRNIDAAKPGLAAYMRDAILANAVRHTP 253
               SCOP domains d1ny9a_ A: Transcriptional activator TipA-S                                                    SCOP domains
               CATH domains 1ny9A00 A:160-253 Antibiotic binding domain of TipA-like multidrug resistance regulators       CATH domains
               Pfam domains TipAS-1ny9A01 A:160-248                                                                  ----- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 1ny9 A 160 WQRIQDEADELTRRFVALMDAGEPADSEGAMDAAEDHRQGIARNHYDCGYEMHTCLGEMYVSDERFTRNIDAAKPGLAAYMRDAILANAVRHTP 253
                                   169       179       189       199       209       219       229       239       249
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: no clan defined [family: TipAS] (2)

(-) Gene Ontology  (3, 3)

NMR Structure(hide GO term definitions)
Chain A   (TIPA_STRLI | P0A4T9)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
biological process
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

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  1ny9
    Family and Domain Information: ProDom | SYSTERS
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  TIPA_STRLI | P0A4T9
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TIPA_STRLI | P0A4T9: 2mbz 2mc0 2vz4

(-) Related Entries Specified in the PDB File

1exi BACILLUS SUBTILIS MULTIDRUG RESISTANCE REGULATOR BMRR
1exj BACILLUS SUBTILIS MULTIDRUG RESISTANCE REGULATOR BMRR
1jbg BACILLUS SUBTILIS MULTIDRUG TRANSPORTER REGULATOR MTAN