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(-) Description

Title :  STRUCTURAL ORIGINS OF L(+)-TARTRATE INHIBITION OF HUMAN PROSTATIC ACID PHOSPHATASE
 
Authors :  M. W. Lacount, G. Handy, L. Lebioda
Date :  11 Sep 98  (Deposition) - 16 Sep 98  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  A (1x),B (1x),C (1x),D (1x)
Keywords :  Acid Phosphatase, N-Propyltartramate, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. W. Lacount, G. Handy, L. Lebioda
Structural Origins Of L(+)-Tartrate Inhibition Of Human Prostatic Acid Phosphatase.
J. Biol. Chem. V. 273 30406 1998
PubMed-ID: 9804805  |  Reference-DOI: 10.1074/JBC.273.46.30406
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN (ACID PHOSPHATASE)
    ChainsA, B, C, D
    EC Number3.1.3.2
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsISOLATED FROM HUMAN SEMINAL FLUID

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)AB  
Biological Unit 2 (1x)  CD
Biological Unit 3 (1x)A (1x)B (1x)C (1x)D (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 16)

Asymmetric Unit (5, 16)
No.NameCountTypeFull Name
1BMA2Ligand/IonBETA-D-MANNOSE
2MAN1Ligand/IonALPHA-D-MANNOSE
3NAG9Ligand/IonN-ACETYL-D-GLUCOSAMINE
4NDG1Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
5PT33Ligand/IonN-PROPYL-TARTRAMIC ACID
Biological Unit 1 (5, 9)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2MAN1Ligand/IonALPHA-D-MANNOSE
3NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
4NDG1Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
5PT32Ligand/IonN-PROPYL-TARTRAMIC ACID
Biological Unit 2 (3, 7)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2MAN-1Ligand/IonALPHA-D-MANNOSE
3NAG5Ligand/IonN-ACETYL-D-GLUCOSAMINE
4NDG-1Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
5PT31Ligand/IonN-PROPYL-TARTRAMIC ACID
Biological Unit 3 (3, 7)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2MAN-1Ligand/IonALPHA-D-MANNOSE
3NAG5Ligand/IonN-ACETYL-D-GLUCOSAMINE
4NDG-1Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
5PT31Ligand/IonN-PROPYL-TARTRAMIC ACID

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN C:3062 , GLU C:3063BINDING SITE FOR RESIDUE NAG C 3361
02AC2SOFTWAREHIS A:1187 , ASN A:1188 , NAG A:1372BINDING SITE FOR RESIDUE NDG A 1371
03AC3SOFTWARENDG A:1371 , BMA A:1373BINDING SITE FOR RESIDUE NAG A 1372
04AC4SOFTWARENAG A:1372 , MAN A:1374 , HOH A:5291BINDING SITE FOR RESIDUE BMA A 1373
05AC5SOFTWAREARG A:1148 , BMA A:1373BINDING SITE FOR RESIDUE MAN A 1374
06AC6SOFTWARELEU C:3041 , VAL C:3186 , ASN C:3188BINDING SITE FOR RESIDUE NAG C 3371
07AC7SOFTWAREASN A:1272 , LEU A:1274 , ASN A:1301 , GLU A:1302 , TYR A:1308 , NAG A:1382BINDING SITE FOR RESIDUE NAG A 1381
08AC8SOFTWARETYR A:1308 , NAG A:1381BINDING SITE FOR RESIDUE NAG A 1382
09AC9SOFTWAREASN B:2272 , LEU B:2274 , ASN B:2301 , GLU B:2302BINDING SITE FOR RESIDUE NAG B 2381
10BC1SOFTWAREASN C:3272 , LEU C:3274 , ASN C:3301 , GLU C:3302 , TYR C:3308 , HOH C:5331BINDING SITE FOR RESIDUE NAG C 3381
11BC2SOFTWAREASN D:4272 , LEU D:4274 , PRO D:4277 , ASN D:4301 , GLU D:4302 , TYR D:4308 , NAG D:4382 , HOH D:5404BINDING SITE FOR RESIDUE NAG D 4381
12BC3SOFTWARESER B:2316 , LEU D:4274 , TYR D:4308 , NAG D:4381 , BMA D:4383 , HOH D:5404BINDING SITE FOR RESIDUE NAG D 4382
13BC4SOFTWARENAG D:4382BINDING SITE FOR RESIDUE BMA D 4383
14BC5SOFTWAREARG A:1011 , HIS A:1012 , ARG A:1015 , ILE A:1018 , ARG A:1079 , HIS A:1257 , ASP A:1258BINDING SITE FOR RESIDUE PT3 A 1345
15BC6SOFTWAREARG B:2011 , HIS B:2012 , ARG B:2015 , ILE B:2018 , ARG B:2079 , HIS B:2257 , ASP B:2258BINDING SITE FOR RESIDUE PT3 B 2345
16BC7SOFTWAREARG D:4011 , HIS D:4012 , ARG D:4015 , ILE D:4018 , ARG D:4079 , HIS D:4257 , ASP D:4258BINDING SITE FOR RESIDUE PT3 D 4345

(-) SS Bonds  (8, 8)

Asymmetric Unit
No.Residues
1A:1129 -A:1340
2A:1315 -A:1319
3B:2129 -B:2340
4B:2315 -B:2319
5C:3129 -C:3340
6C:3315 -C:3319
7D:4129 -D:4340
8D:4315 -D:4319

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Leu A:1124 -Pro A:1125
2Leu B:2124 -Pro B:2125
3Leu C:3124 -Pro C:3125
4Leu D:4124 -Pro D:4125

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (4, 16)

Asymmetric Unit (4, 16)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_047961F124VPPAP_HUMANPolymorphism17856254A
B
C
D
F1092
2092
3092
4092
V
2UniProtVAR_047962W226RPPAP_HUMANPolymorphism17856253A
B
C
D
W1194
2194
3194
4194
R
3UniProtVAR_047963Y330HPPAP_HUMANPolymorphism17851392A
B
C
D
Y1298
2298
3298
4298
H
4UniProtVAR_047964V360APPAP_HUMANPolymorphism17850198A
B
C
D
V1328
2328
3328
4328
A

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (4, 8)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_047961F124VPPAP_HUMANPolymorphism17856254A
B
C
A/B
F1092
2092
3092
4092
V
2UniProtVAR_047962W226RPPAP_HUMANPolymorphism17856253A
B
C
A/B
W1194
2194
3194
4194
R
3UniProtVAR_047963Y330HPPAP_HUMANPolymorphism17851392A
B
C
A/B
Y1298
2298
3298
4298
H
4UniProtVAR_047964V360APPAP_HUMANPolymorphism17850198A
B
C
A/B
V1328
2328
3328
4328
A

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (4, 8)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_047961F124VPPAP_HUMANPolymorphism17856254A
B
C
C/D
F1092
2092
3092
4092
V
2UniProtVAR_047962W226RPPAP_HUMANPolymorphism17856253A
B
C
C/D
W1194
2194
3194
4194
R
3UniProtVAR_047963Y330HPPAP_HUMANPolymorphism17851392A
B
C
C/D
Y1298
2298
3298
4298
H
4UniProtVAR_047964V360APPAP_HUMANPolymorphism17850198A
B
C
C/D
V1328
2328
3328
4328
A

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (4, 16)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_047961F124VPPAP_HUMANPolymorphism17856254A
B
C
A/B/C/D
F1092
2092
3092
4092
V
2UniProtVAR_047962W226RPPAP_HUMANPolymorphism17856253A
B
C
A/B/C/D
W1194
2194
3194
4194
R
3UniProtVAR_047963Y330HPPAP_HUMANPolymorphism17851392A
B
C
A/B/C/D
Y1298
2298
3298
4298
H
4UniProtVAR_047964V360APPAP_HUMANPolymorphism17850198A
B
C
A/B/C/D
V1328
2328
3328
4328
A

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (2, 8)

Asymmetric Unit (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HIS_ACID_PHOSPHAT_1PS00616 Histidine acid phosphatases phosphohistidine signature.PPAP_HUMAN35-49
 
 
 
  4A:1003-1017
B:2003-2017
C:3003-3017
D:4003-4017
2HIS_ACID_PHOSPHAT_2PS00778 Histidine acid phosphatases active site signature.PPAP_HUMAN283-299
 
 
 
  4A:1251-1267
B:2251-2267
C:3251-3267
D:4251-4267
Biological Unit 1 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HIS_ACID_PHOSPHAT_1PS00616 Histidine acid phosphatases phosphohistidine signature.PPAP_HUMAN35-49
 
 
 
  2A:1003-1017
B:2003-2017
-
-
2HIS_ACID_PHOSPHAT_2PS00778 Histidine acid phosphatases active site signature.PPAP_HUMAN283-299
 
 
 
  2A:1251-1267
B:2251-2267
-
-
Biological Unit 2 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HIS_ACID_PHOSPHAT_1PS00616 Histidine acid phosphatases phosphohistidine signature.PPAP_HUMAN35-49
 
 
 
  2-
-
C:3003-3017
D:4003-4017
2HIS_ACID_PHOSPHAT_2PS00778 Histidine acid phosphatases active site signature.PPAP_HUMAN283-299
 
 
 
  2-
-
C:3251-3267
D:4251-4267
Biological Unit 3 (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HIS_ACID_PHOSPHAT_1PS00616 Histidine acid phosphatases phosphohistidine signature.PPAP_HUMAN35-49
 
 
 
  4A:1003-1017
B:2003-2017
C:3003-3017
D:4003-4017
2HIS_ACID_PHOSPHAT_2PS00778 Histidine acid phosphatases active site signature.PPAP_HUMAN283-299
 
 
 
  4A:1251-1267
B:2251-2267
C:3251-3267
D:4251-4267

(-) Exons   (10, 40)

Asymmetric Unit (10, 40)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000003363751aENSE00001164343chr3:132036211-132036420210PPAP_HUMAN1-40404A:1001-1008
B:2001-2008
C:3001-3008
D:4001-4008
8
8
8
8
1.2aENST000003363752aENSE00000778260chr3:132047111-13204720696PPAP_HUMAN41-72324A:1009-1040
B:2009-2040
C:3009-3040
D:4009-4040
32
32
32
32
1.3ENST000003363753ENSE00000778261chr3:132050491-13205057787PPAP_HUMAN73-101294A:1041-1069
B:2041-2069
C:3041-3069
D:4041-4069
29
29
29
29
1.4aENST000003363754aENSE00000885862chr3:132051036-132051188153PPAP_HUMAN102-152514A:1070-1120
B:2070-2120
C:3070-3120
D:4070-4120
51
51
51
51
1.6bENST000003363756bENSE00000778270chr3:132056300-13205639899PPAP_HUMAN153-185334A:1121-1153
B:2121-2153
C:3121-3153
D:4121-4153
33
33
33
33
1.7bENST000003363757bENSE00000441916chr3:132061396-13206148893PPAP_HUMAN186-216314A:1154-1184
B:2154-2184
C:3154-3184
D:4154-4184
31
31
31
31
1.8ENST000003363758ENSE00000778272chr3:132063771-132063903133PPAP_HUMAN217-261454A:1185-1229
B:2185-2229
C:3185-3229
D:4185-4229
45
45
45
45
1.9ENST000003363759ENSE00000778273chr3:132068764-13206884683PPAP_HUMAN261-288284A:1229-1256
B:2229-2256
C:3229-3256
D:4229-4256
28
28
28
28
1.10bENST0000033637510bENSE00000778274chr3:132071564-132071667104PPAP_HUMAN289-323354A:1257-1291
B:2257-2291
C:3257-3291
D:4257-4291
35
35
35
35
1.11cENST0000033637511cENSE00001341899chr3:132075530-1320775962067PPAP_HUMAN323-386644A:1291-1342
B:2291-2342
C:3291-3342
D:4291-4342
52
52
52
52

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:342
 aligned with PPAP_HUMAN | P15309 from UniProtKB/Swiss-Prot  Length:386

    Alignment length:342
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372  
          PPAP_HUMAN     33 KELKFVTLVFRHGDRSPIDTFPTDPIKESSWPQGFGQLTQLGMEQHYELGEYIRKRYRKFLNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILLWQPIPVHTVPLSEDQLLYLPFRNCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDPLYCESVHNFTLPSWATEDTMTKLRELSELSLLSLYGIHKQKEKSRLQGGVLVNEILNHMKRATQIPSYKKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHLTELYFEKGEYFVEMYYRNETQHEPYPLMLPGCSPSCPLERFAELVGPVIPQDWSTECMT  374
               SCOP domains d2hpaa_ A: Prostatic acid phosphatase                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 2hpaA00 A:1001-1342 Phosphoglycerate mutase-like                                                                                                                                                                                                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeee................hhh.........hhhhhhhhhhhhhhhhh.............eeeee...hhhhhhhhhhhhhh....hhh.................hhh...........hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh......hhhhhhh.hhhhhhhhh..........hhhhhhhhhhhhhhhhhhh....hhhhhhh.hhhhhhhhhhhhhhhhh......eeeeee.hhhhhhhhhhh............eeeeeeeee..eeeeeeeee.................eeehhhhhhhhhhh....hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --HIS_ACID_PHOSPH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HIS_ACID_PHOSPHAT--------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.1a    Exon 1.2a  PDB: A:1009-1040     Exon 1.3  PDB: A:1041-1069   Exon 1.4a  PDB: A:1070-1120 UniProt: 102-152       Exon 1.6b  PDB: A:1121-1153      Exon 1.7b  PDB: A:1154-1184    Exon 1.8  PDB: A:1185-1229 UniProt: 217-261  ---------------------------Exon 1.10b  PDB: A:1257-1291       --------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9  PDB: A:1229-1256  ----------------------------------Exon 1.11c  PDB: A:1291-1342 UniProt: 323-386        Transcript 1 (2)
                2hpa A 1001 KELKFVTLVFRHGDRSPIDTFPTDPIKESSWPQGFGQLTQLGMEQHYELGEYIRKRYRKFLNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILLWQPIPVHTVPLSEDQLLYLPFRNCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDPLYCESVHNFTLPSWATEDTMTKLRELSELSLLSLYGIHKQKEKSRLQGGVLVNEILNHMKRATQIPSYKKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHLTELYFEKGEYFVEMYYRNETQHEPYPLMLPGCSPSCPLERFAELVGPVIPQDWSTECMT 1342
                                  1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170      1180      1190      1200      1210      1220      1230      1240      1250      1260      1270      1280      1290      1300      1310      1320      1330      1340  

Chain B from PDB  Type:PROTEIN  Length:342
 aligned with PPAP_HUMAN | P15309 from UniProtKB/Swiss-Prot  Length:386

    Alignment length:342
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372  
          PPAP_HUMAN     33 KELKFVTLVFRHGDRSPIDTFPTDPIKESSWPQGFGQLTQLGMEQHYELGEYIRKRYRKFLNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILLWQPIPVHTVPLSEDQLLYLPFRNCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDPLYCESVHNFTLPSWATEDTMTKLRELSELSLLSLYGIHKQKEKSRLQGGVLVNEILNHMKRATQIPSYKKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHLTELYFEKGEYFVEMYYRNETQHEPYPLMLPGCSPSCPLERFAELVGPVIPQDWSTECMT  374
               SCOP domains d2hpab_ B: Prostatic acid phosphatase                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 2hpaB00 B:2001-2342 Phosphoglycerate mutase-like                                                                                                                                                                                                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeee................hhh.........hhhhhhhhhhhhhhhhhh............eeeee...hhhhhhhhhhhhhh....hhh.................hhh...........hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh......hhhhhhh.hhhhhhhhh..........hhhhhhhhhhhhhhhhhhh....hhhhhhh.hhhhhhhhhhhhhhhhh......eeeeee.hhhhhhhhhhh............eeeeeeeee..eeeeeeeee.......eee.......eeehhhhhhh.hhh....hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --HIS_ACID_PHOSPH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HIS_ACID_PHOSPHAT--------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.1a    Exon 1.2a  PDB: B:2009-2040     Exon 1.3  PDB: B:2041-2069   Exon 1.4a  PDB: B:2070-2120 UniProt: 102-152       Exon 1.6b  PDB: B:2121-2153      Exon 1.7b  PDB: B:2154-2184    Exon 1.8  PDB: B:2185-2229 UniProt: 217-261  ---------------------------Exon 1.10b  PDB: B:2257-2291       --------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9  PDB: B:2229-2256  ----------------------------------Exon 1.11c  PDB: B:2291-2342 UniProt: 323-386        Transcript 1 (2)
                2hpa B 2001 KELKFVTLVFRHGDRSPIDTFPTDPIKESSWPQGFGQLTQLGMEQHYELGEYIRKRYRKFLNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILLWQPIPVHTVPLSEDQLLYLPFRNCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDPLYCESVHNFTLPSWATEDTMTKLRELSELSLLSLYGIHKQKEKSRLQGGVLVNEILNHMKRATQIPSYKKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHLTELYFEKGEYFVEMYYRNETQHEPYPLMLPGCSPSCPLERFAELVGPVIPQDWSTECMT 2342
                                  2010      2020      2030      2040      2050      2060      2070      2080      2090      2100      2110      2120      2130      2140      2150      2160      2170      2180      2190      2200      2210      2220      2230      2240      2250      2260      2270      2280      2290      2300      2310      2320      2330      2340  

Chain C from PDB  Type:PROTEIN  Length:342
 aligned with PPAP_HUMAN | P15309 from UniProtKB/Swiss-Prot  Length:386

    Alignment length:342
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372  
          PPAP_HUMAN     33 KELKFVTLVFRHGDRSPIDTFPTDPIKESSWPQGFGQLTQLGMEQHYELGEYIRKRYRKFLNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILLWQPIPVHTVPLSEDQLLYLPFRNCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDPLYCESVHNFTLPSWATEDTMTKLRELSELSLLSLYGIHKQKEKSRLQGGVLVNEILNHMKRATQIPSYKKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHLTELYFEKGEYFVEMYYRNETQHEPYPLMLPGCSPSCPLERFAELVGPVIPQDWSTECMT  374
               SCOP domains d2hpac_ C: Prostatic acid phosphatase                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 2hpaC00 C:3001-3342 Phosphoglycerate mutase-like                                                                                                                                                                                                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeee................hhh.........hhhhhhhhhhhhhhhhh.............eeeeee..hhhhhhhhhhhhhh....hhh............eeee.hhh...........hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh......hhhhhhh.hhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh....hhhhhhh.hhhhhhhhhhhhhhhhh......eeeeee.hhhhhhhhhhh............eeeeeeeee..eeeeeeeee.......eee.......eeehhhhhhhhhhh....hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --HIS_ACID_PHOSPH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HIS_ACID_PHOSPHAT--------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.1a    Exon 1.2a  PDB: C:3009-3040     Exon 1.3  PDB: C:3041-3069   Exon 1.4a  PDB: C:3070-3120 UniProt: 102-152       Exon 1.6b  PDB: C:3121-3153      Exon 1.7b  PDB: C:3154-3184    Exon 1.8  PDB: C:3185-3229 UniProt: 217-261  ---------------------------Exon 1.10b  PDB: C:3257-3291       --------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9  PDB: C:3229-3256  ----------------------------------Exon 1.11c  PDB: C:3291-3342 UniProt: 323-386        Transcript 1 (2)
                2hpa C 3001 KELKFVTLVFRHGDRSPIDTFPTDPIKESSWPQGFGQLTQLGMEQHYELGEYIRKRYRKFLNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILLWQPIPVHTVPLSEDQLLYLPFRNCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDPLYCESVHNFTLPSWATEDTMTKLRELSELSLLSLYGIHKQKEKSRLQGGVLVNEILNHMKRATQIPSYKKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHLTELYFEKGEYFVEMYYRNETQHEPYPLMLPGCSPSCPLERFAELVGPVIPQDWSTECMT 3342
                                  3010      3020      3030      3040      3050      3060      3070      3080      3090      3100      3110      3120      3130      3140      3150      3160      3170      3180      3190      3200      3210      3220      3230      3240      3250      3260      3270      3280      3290      3300      3310      3320      3330      3340  

Chain D from PDB  Type:PROTEIN  Length:342
 aligned with PPAP_HUMAN | P15309 from UniProtKB/Swiss-Prot  Length:386

    Alignment length:342
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372  
          PPAP_HUMAN     33 KELKFVTLVFRHGDRSPIDTFPTDPIKESSWPQGFGQLTQLGMEQHYELGEYIRKRYRKFLNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILLWQPIPVHTVPLSEDQLLYLPFRNCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDPLYCESVHNFTLPSWATEDTMTKLRELSELSLLSLYGIHKQKEKSRLQGGVLVNEILNHMKRATQIPSYKKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHLTELYFEKGEYFVEMYYRNETQHEPYPLMLPGCSPSCPLERFAELVGPVIPQDWSTECMT  374
               SCOP domains d2hpad_ D: Prostatic acid phosphatase                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 2hpaD00 D:4001-4342 Phosphoglycerate mutase-like                                                                                                                                                                                                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeee................hhh.........hhhhhhhhhhhhhhhhh.............eeeee...hhhhhhhhhhhhhh....hhh.................hhh...........hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh......hhhhhhh.hhhhhhhhh..........hhhhhhhhhhhhhhhhhhh....hhhhhhh.hhhhhhhhhhhhhhhhh......eeeeee.hhhhhhhhhhh............eeeeeeeee..eeeeeeeee.......eee.......eeehhhhhhh.hhh....hhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------V-----------------------------------------------------------------------------------------------------R-------------------------------------------------------------------------------------------------------H-----------------------------A-------------- SAPs(SNPs)
                    PROSITE --HIS_ACID_PHOSPH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HIS_ACID_PHOSPHAT--------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.1a    Exon 1.2a  PDB: D:4009-4040     Exon 1.3  PDB: D:4041-4069   Exon 1.4a  PDB: D:4070-4120 UniProt: 102-152       Exon 1.6b  PDB: D:4121-4153      Exon 1.7b  PDB: D:4154-4184    Exon 1.8  PDB: D:4185-4229 UniProt: 217-261  ---------------------------Exon 1.10b  PDB: D:4257-4291       --------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9  PDB: D:4229-4256  ----------------------------------Exon 1.11c  PDB: D:4291-4342 UniProt: 323-386        Transcript 1 (2)
                2hpa D 4001 KELKFVTLVFRHGDRSPIDTFPTDPIKESSWPQGFGQLTQLGMEQHYELGEYIRKRYRKFLNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILLWQPIPVHTVPLSEDQLLYLPFRNCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDPLYCESVHNFTLPSWATEDTMTKLRELSELSLLSLYGIHKQKEKSRLQGGVLVNEILNHMKRATQIPSYKKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHLTELYFEKGEYFVEMYYRNETQHEPYPLMLPGCSPSCPLERFAELVGPVIPQDWSTECMT 4342
                                  4010      4020      4030      4040      4050      4060      4070      4080      4090      4100      4110      4120      4130      4140      4150      4160      4170      4180      4190      4200      4210      4220      4230      4240      4250      4260      4270      4280      4290      4300      4310      4320      4330      4340  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2HPA)

(-) Gene Ontology  (31, 31)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (PPAP_HUMAN | P15309)
molecular function
    GO:0008253    5'-nucleotidase activity    Catalysis of the reaction: a 5'-ribonucleotide + H2O = a ribonucleoside + phosphate.
    GO:0003993    acid phosphatase activity    Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum.
    GO:0033265    choline binding    Interacting selectively and non-covalently with choline, the amine 2-hydroxy-N,N,N-trimethylethanaminium.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0052642    lysophosphatidic acid phosphatase activity    Catalysis of the reaction: lysophosphatidic acid + H2O = phosphate + monoacylglycerol.
    GO:0016791    phosphatase activity    Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate.
    GO:0042131    thiamine phosphate phosphatase activity    Catalysis of the reaction: thiamine phosphate + H2O = thiamine + phosphate.
biological process
    GO:0046085    adenosine metabolic process    The chemical reactions and pathways involving adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes.
    GO:0016311    dephosphorylation    The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
    GO:0009117    nucleotide metabolic process    The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates).
    GO:0060168    positive regulation of adenosine receptor signaling pathway    Any process that activates or increases the frequency, rate or extent of the adenosine receptor signaling pathway. The adenosine receptor pathway is the series of molecular signals generated as a consequence of an adenosine receptor binding to one of its physiological ligands.
    GO:0006144    purine nucleobase metabolic process    The chemical reactions and pathways involving purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine.
    GO:0051930    regulation of sensory perception of pain    Any process that modulates the frequency, rate or extent of the sensory perception of pain, the series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal.
    GO:0006772    thiamine metabolic process    The chemical reactions and pathways involving thiamine (vitamin B1), a water soluble vitamin present in fresh vegetables and meats, especially liver.
cellular component
    GO:0031985    Golgi cisterna    Any of the thin, flattened membrane-bounded compartments that form the central portion of the Golgi complex.
    GO:0045177    apical part of cell    The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0030175    filopodium    Thin, stiff, actin-based protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal or dendritic growth cone, or a dendritic shaft.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0005765    lysosomal membrane    The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm.
    GO:0005764    lysosome    A small lytic vacuole that has cell cycle-independent morphology and is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005771    multivesicular body    A type of endosome in which regions of the limiting endosomal membrane invaginate to form internal vesicles; membrane proteins that enter the internal vesicles are sequestered from the cytoplasm.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0030141    secretory granule    A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell and upon stimulation, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules.
    GO:0012506    vesicle membrane    The lipid bilayer surrounding any membrane-bounded vesicle in the cell.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PPAP_HUMAN | P153091cvi 1nd5 1nd6 2l3h 2l77 2l79 2mg0 3ppd

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2HPA)