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2HPA
Asym. Unit
Info
Asym.Unit (246 KB)
Biol.Unit 1 (123 KB)
Biol.Unit 2 (120 KB)
Biol.Unit 3 (237 KB)
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(1)
Title
:
STRUCTURAL ORIGINS OF L(+)-TARTRATE INHIBITION OF HUMAN PROSTATIC ACID PHOSPHATASE
Authors
:
M. W. Lacount, G. Handy, L. Lebioda
Date
:
11 Sep 98 (Deposition) - 16 Sep 98 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B,C,D (1x)
Keywords
:
Acid Phosphatase, N-Propyltartramate, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. W. Lacount, G. Handy, L. Lebioda
Structural Origins Of L(+)-Tartrate Inhibition Of Human Prostatic Acid Phosphatase.
J. Biol. Chem. V. 273 30406 1998
(for further references see the
PDB file header
)
[
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]
Hetero Components
(5, 16)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: ALPHA-D-MANNOSE (MANa)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
5a: N-PROPYL-TARTRAMIC ACID (PT3a)
5b: N-PROPYL-TARTRAMIC ACID (PT3b)
5c: N-PROPYL-TARTRAMIC ACID (PT3c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
9
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
NDG
1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
5
PT3
3
Ligand/Ion
N-PROPYL-TARTRAMIC ACID
[
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]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN C:3062 , GLU C:3063
BINDING SITE FOR RESIDUE NAG C 3361
02
AC2
SOFTWARE
HIS A:1187 , ASN A:1188 , NAG A:1372
BINDING SITE FOR RESIDUE NDG A 1371
03
AC3
SOFTWARE
NDG A:1371 , BMA A:1373
BINDING SITE FOR RESIDUE NAG A 1372
04
AC4
SOFTWARE
NAG A:1372 , MAN A:1374 , HOH A:5291
BINDING SITE FOR RESIDUE BMA A 1373
05
AC5
SOFTWARE
ARG A:1148 , BMA A:1373
BINDING SITE FOR RESIDUE MAN A 1374
06
AC6
SOFTWARE
LEU C:3041 , VAL C:3186 , ASN C:3188
BINDING SITE FOR RESIDUE NAG C 3371
07
AC7
SOFTWARE
ASN A:1272 , LEU A:1274 , ASN A:1301 , GLU A:1302 , TYR A:1308 , NAG A:1382
BINDING SITE FOR RESIDUE NAG A 1381
08
AC8
SOFTWARE
TYR A:1308 , NAG A:1381
BINDING SITE FOR RESIDUE NAG A 1382
09
AC9
SOFTWARE
ASN B:2272 , LEU B:2274 , ASN B:2301 , GLU B:2302
BINDING SITE FOR RESIDUE NAG B 2381
10
BC1
SOFTWARE
ASN C:3272 , LEU C:3274 , ASN C:3301 , GLU C:3302 , TYR C:3308 , HOH C:5331
BINDING SITE FOR RESIDUE NAG C 3381
11
BC2
SOFTWARE
ASN D:4272 , LEU D:4274 , PRO D:4277 , ASN D:4301 , GLU D:4302 , TYR D:4308 , NAG D:4382 , HOH D:5404
BINDING SITE FOR RESIDUE NAG D 4381
12
BC3
SOFTWARE
SER B:2316 , LEU D:4274 , TYR D:4308 , NAG D:4381 , BMA D:4383 , HOH D:5404
BINDING SITE FOR RESIDUE NAG D 4382
13
BC4
SOFTWARE
NAG D:4382
BINDING SITE FOR RESIDUE BMA D 4383
14
BC5
SOFTWARE
ARG A:1011 , HIS A:1012 , ARG A:1015 , ILE A:1018 , ARG A:1079 , HIS A:1257 , ASP A:1258
BINDING SITE FOR RESIDUE PT3 A 1345
15
BC6
SOFTWARE
ARG B:2011 , HIS B:2012 , ARG B:2015 , ILE B:2018 , ARG B:2079 , HIS B:2257 , ASP B:2258
BINDING SITE FOR RESIDUE PT3 B 2345
16
BC7
SOFTWARE
ARG D:4011 , HIS D:4012 , ARG D:4015 , ILE D:4018 , ARG D:4079 , HIS D:4257 , ASP D:4258
BINDING SITE FOR RESIDUE PT3 D 4345
[
close Site info
]
SAPs(SNPs)/Variants
(4, 16)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_047961 (F4092V, chain A/B/C/D, )
2: VAR_047962 (W4194R, chain A/B/C/D, )
3: VAR_047963 (Y4298H, chain A/B/C/D, )
4: VAR_047964 (V4328A, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_047961
F
124
V
PPAP_HUMAN
Polymorphism
17856254
A
B
C
D
F
1092
2092
3092
4092
V
2
UniProt
VAR_047962
W
226
R
PPAP_HUMAN
Polymorphism
17856253
A
B
C
D
W
1194
2194
3194
4194
R
3
UniProt
VAR_047963
Y
330
H
PPAP_HUMAN
Polymorphism
17851392
A
B
C
D
Y
1298
2298
3298
4298
H
4
UniProt
VAR_047964
V
360
A
PPAP_HUMAN
Polymorphism
17850198
A
B
C
D
V
1328
2328
3328
4328
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: HIS_ACID_PHOSPHAT_1 (A:1003-1017,B:2003-2017,C:3003-301...)
2: HIS_ACID_PHOSPHAT_2 (A:1251-1267,B:2251-2267,C:3251-326...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HIS_ACID_PHOSPHAT_1
PS00616
Histidine acid phosphatases phosphohistidine signature.
PPAP_HUMAN
35-49
4
A:1003-1017
B:2003-2017
C:3003-3017
D:4003-4017
2
HIS_ACID_PHOSPHAT_2
PS00778
Histidine acid phosphatases active site signature.
PPAP_HUMAN
283-299
4
A:1251-1267
B:2251-2267
C:3251-3267
D:4251-4267
[
close PROSITE info
]
Exons
(10, 40)
Info
All Exons
Exon 1.1a (A:1001-1008 | B:2001-2008 | C:3001...)
Exon 1.2a (A:1009-1040 | B:2009-2040 | C:3009...)
Exon 1.3 (A:1041-1069 | B:2041-2069 | C:3041...)
Exon 1.4a (A:1070-1120 | B:2070-2120 | C:3070...)
Exon 1.6b (A:1121-1153 | B:2121-2153 | C:3121...)
Exon 1.7b (A:1154-1184 | B:2154-2184 | C:3154...)
Exon 1.8 (A:1185-1229 | B:2185-2229 | C:3185...)
Exon 1.9 (A:1229-1256 | B:2229-2256 | C:3229...)
Exon 1.10b (A:1257-1291 | B:2257-2291 | C:3257...)
Exon 1.11c (A:1291-1342 | B:2291-2342 | C:3291...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.2a
03: Boundary 1.2a/1.3
04: Boundary 1.3/1.4a
05: Boundary 1.4a/1.6b
06: Boundary 1.6b/1.7b
07: Boundary 1.7b/1.8
08: Boundary 1.8/1.9
09: Boundary 1.9/1.10b
10: Boundary 1.10b/1.11c
11: Boundary 1.11c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000336375
1a
ENSE00001164343
chr3:
132036211-132036420
210
PPAP_HUMAN
1-40
40
4
A:1001-1008
B:2001-2008
C:3001-3008
D:4001-4008
8
8
8
8
1.2a
ENST00000336375
2a
ENSE00000778260
chr3:
132047111-132047206
96
PPAP_HUMAN
41-72
32
4
A:1009-1040
B:2009-2040
C:3009-3040
D:4009-4040
32
32
32
32
1.3
ENST00000336375
3
ENSE00000778261
chr3:
132050491-132050577
87
PPAP_HUMAN
73-101
29
4
A:1041-1069
B:2041-2069
C:3041-3069
D:4041-4069
29
29
29
29
1.4a
ENST00000336375
4a
ENSE00000885862
chr3:
132051036-132051188
153
PPAP_HUMAN
102-152
51
4
A:1070-1120
B:2070-2120
C:3070-3120
D:4070-4120
51
51
51
51
1.6b
ENST00000336375
6b
ENSE00000778270
chr3:
132056300-132056398
99
PPAP_HUMAN
153-185
33
4
A:1121-1153
B:2121-2153
C:3121-3153
D:4121-4153
33
33
33
33
1.7b
ENST00000336375
7b
ENSE00000441916
chr3:
132061396-132061488
93
PPAP_HUMAN
186-216
31
4
A:1154-1184
B:2154-2184
C:3154-3184
D:4154-4184
31
31
31
31
1.8
ENST00000336375
8
ENSE00000778272
chr3:
132063771-132063903
133
PPAP_HUMAN
217-261
45
4
A:1185-1229
B:2185-2229
C:3185-3229
D:4185-4229
45
45
45
45
1.9
ENST00000336375
9
ENSE00000778273
chr3:
132068764-132068846
83
PPAP_HUMAN
261-288
28
4
A:1229-1256
B:2229-2256
C:3229-3256
D:4229-4256
28
28
28
28
1.10b
ENST00000336375
10b
ENSE00000778274
chr3:
132071564-132071667
104
PPAP_HUMAN
289-323
35
4
A:1257-1291
B:2257-2291
C:3257-3291
D:4257-4291
35
35
35
35
1.11c
ENST00000336375
11c
ENSE00001341899
chr3:
132075530-132077596
2067
PPAP_HUMAN
323-386
64
4
A:1291-1342
B:2291-2342
C:3291-3342
D:4291-4342
52
52
52
52
[
close EXON info
]
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2hpaa_ (A:)
1b: SCOP_d2hpac_ (C:)
1c: SCOP_d2hpad_ (D:)
1d: SCOP_d2hpab_ (B:)
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(
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Phosphoglycerate mutase-like
(103)
Superfamily
:
Phosphoglycerate mutase-like
(103)
Family
:
Histidine acid phosphatase
(24)
Protein domain
:
Prostatic acid phosphatase
(6)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d2hpaa_
A:
1b
d2hpac_
C:
1c
d2hpad_
D:
1d
d2hpab_
B:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2hpaA00 (A:1001-1342)
1b: CATH_2hpaB00 (B:2001-2342)
1c: CATH_2hpaC00 (C:3001-3342)
1d: CATH_2hpaD00 (D:4001-4342)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Phosphoglycerate mutase-like
(91)
Human (Homo sapiens)
(18)
1a
2hpaA00
A:1001-1342
1b
2hpaB00
B:2001-2342
1c
2hpaC00
C:3001-3342
1d
2hpaD00
D:4001-4342
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
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Asym.Unit (246 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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