PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
2HPA
Biol. Unit 3
Info
Asym.Unit (246 KB)
Biol.Unit 1 (123 KB)
Biol.Unit 2 (120 KB)
Biol.Unit 3 (237 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURAL ORIGINS OF L(+)-TARTRATE INHIBITION OF HUMAN PROSTATIC ACID PHOSPHATASE
Authors
:
M. W. Lacount, G. Handy, L. Lebioda
Date
:
11 Sep 98 (Deposition) - 16 Sep 98 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B,C,D (1x)
Keywords
:
Acid Phosphatase, N-Propyltartramate, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. W. Lacount, G. Handy, L. Lebioda
Structural Origins Of L(+)-Tartrate Inhibition Of Human Prostatic Acid Phosphatase.
J. Biol. Chem. V. 273 30406 1998
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 7)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: ALPHA-D-MANNOSE (MANa)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
5a: N-PROPYL-TARTRAMIC ACID (PT3a)
5b: N-PROPYL-TARTRAMIC ACID (PT3b)
5c: N-PROPYL-TARTRAMIC ACID (PT3c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
MAN
-1
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
5
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
NDG
-1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
5
PT3
1
Ligand/Ion
N-PROPYL-TARTRAMIC ACID
[
close Hetero Component info
]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN C:3062 , GLU C:3063
BINDING SITE FOR RESIDUE NAG C 3361
02
AC2
SOFTWARE
HIS A:1187 , ASN A:1188 , NAG A:1372
BINDING SITE FOR RESIDUE NDG A 1371
03
AC3
SOFTWARE
NDG A:1371 , BMA A:1373
BINDING SITE FOR RESIDUE NAG A 1372
04
AC4
SOFTWARE
NAG A:1372 , MAN A:1374 , HOH A:5291
BINDING SITE FOR RESIDUE BMA A 1373
05
AC5
SOFTWARE
ARG A:1148 , BMA A:1373
BINDING SITE FOR RESIDUE MAN A 1374
06
AC6
SOFTWARE
LEU C:3041 , VAL C:3186 , ASN C:3188
BINDING SITE FOR RESIDUE NAG C 3371
07
AC7
SOFTWARE
ASN A:1272 , LEU A:1274 , ASN A:1301 , GLU A:1302 , TYR A:1308 , NAG A:1382
BINDING SITE FOR RESIDUE NAG A 1381
08
AC8
SOFTWARE
TYR A:1308 , NAG A:1381
BINDING SITE FOR RESIDUE NAG A 1382
09
AC9
SOFTWARE
ASN B:2272 , LEU B:2274 , ASN B:2301 , GLU B:2302
BINDING SITE FOR RESIDUE NAG B 2381
10
BC1
SOFTWARE
ASN C:3272 , LEU C:3274 , ASN C:3301 , GLU C:3302 , TYR C:3308 , HOH C:5331
BINDING SITE FOR RESIDUE NAG C 3381
11
BC2
SOFTWARE
ASN D:4272 , LEU D:4274 , PRO D:4277 , ASN D:4301 , GLU D:4302 , TYR D:4308 , NAG D:4382 , HOH D:5404
BINDING SITE FOR RESIDUE NAG D 4381
12
BC3
SOFTWARE
SER B:2316 , LEU D:4274 , TYR D:4308 , NAG D:4381 , BMA D:4383 , HOH D:5404
BINDING SITE FOR RESIDUE NAG D 4382
13
BC4
SOFTWARE
NAG D:4382
BINDING SITE FOR RESIDUE BMA D 4383
14
BC5
SOFTWARE
ARG A:1011 , HIS A:1012 , ARG A:1015 , ILE A:1018 , ARG A:1079 , HIS A:1257 , ASP A:1258
BINDING SITE FOR RESIDUE PT3 A 1345
15
BC6
SOFTWARE
ARG B:2011 , HIS B:2012 , ARG B:2015 , ILE B:2018 , ARG B:2079 , HIS B:2257 , ASP B:2258
BINDING SITE FOR RESIDUE PT3 B 2345
16
BC7
SOFTWARE
ARG D:4011 , HIS D:4012 , ARG D:4015 , ILE D:4018 , ARG D:4079 , HIS D:4257 , ASP D:4258
BINDING SITE FOR RESIDUE PT3 D 4345
[
close Site info
]
SAPs(SNPs)/Variants
(4, 16)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_047961 (F4092V, chain A/B/C/A/B/C/D, )
2: VAR_047962 (W4194R, chain A/B/C/A/B/C/D, )
3: VAR_047963 (Y4298H, chain A/B/C/A/B/C/D, )
4: VAR_047964 (V4328A, chain A/B/C/A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_047961
F
124
V
PPAP_HUMAN
Polymorphism
17856254
A
B
C
A/B/C/D
F
1092
2092
3092
4092
V
2
UniProt
VAR_047962
W
226
R
PPAP_HUMAN
Polymorphism
17856253
A
B
C
A/B/C/D
W
1194
2194
3194
4194
R
3
UniProt
VAR_047963
Y
330
H
PPAP_HUMAN
Polymorphism
17851392
A
B
C
A/B/C/D
Y
1298
2298
3298
4298
H
4
UniProt
VAR_047964
V
360
A
PPAP_HUMAN
Polymorphism
17850198
A
B
C
A/B/C/D
V
1328
2328
3328
4328
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: HIS_ACID_PHOSPHAT_1 (A:1003-1017,B:2003-2017,C:3003-301...)
2: HIS_ACID_PHOSPHAT_2 (A:1251-1267,B:2251-2267,C:3251-326...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HIS_ACID_PHOSPHAT_1
PS00616
Histidine acid phosphatases phosphohistidine signature.
PPAP_HUMAN
35-49
4
A:1003-1017
B:2003-2017
C:3003-3017
D:4003-4017
2
HIS_ACID_PHOSPHAT_2
PS00778
Histidine acid phosphatases active site signature.
PPAP_HUMAN
283-299
4
A:1251-1267
B:2251-2267
C:3251-3267
D:4251-4267
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2hpaa_ (A:)
1b: SCOP_d2hpac_ (C:)
1c: SCOP_d2hpad_ (D:)
1d: SCOP_d2hpab_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Phosphoglycerate mutase-like
(103)
Superfamily
:
Phosphoglycerate mutase-like
(103)
Family
:
Histidine acid phosphatase
(24)
Protein domain
:
Prostatic acid phosphatase
(6)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d2hpaa_
A:
1b
d2hpac_
C:
1c
d2hpad_
D:
1d
d2hpab_
B:
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2hpaA00 (A:1001-1342)
1b: CATH_2hpaB00 (B:2001-2342)
1c: CATH_2hpaC00 (C:3001-3342)
1d: CATH_2hpaD00 (D:4001-4342)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Phosphoglycerate mutase-like
(91)
Human (Homo sapiens)
(18)
1a
2hpaA00
A:1001-1342
1b
2hpaB00
B:2001-2342
1c
2hpaC00
C:3001-3342
1d
2hpaD00
D:4001-4342
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Asymmetric Unit 2
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (246 KB)
Header - Asym.Unit
Biol.Unit 1 (123 KB)
Header - Biol.Unit 1
Biol.Unit 2 (120 KB)
Header - Biol.Unit 2
Biol.Unit 3 (237 KB)
Header - Biol.Unit 3
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2HPA
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help