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(-) Description

Title :  SOLUTION NMR STRUCTURE OF PAP248-286 IN 30% TFE
 
Authors :  R. Nanga, J. R. Brender, N. Popovych, A. Ramamoorthy
Date :  03 Dec 10  (Deposition) - 29 Dec 10  (Release) - 29 Dec 10  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
NMR Structure *:  A  (1x)
Keywords :  Pap248-286, Sevi, Amyloid, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. R. Brender, R. Nanga, N. Popovych, R. Soong, P. M. Macdonald, R. Ayyalusamy
Solution Nmr Structure Of Pap248-286 In Tfe
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROSTATIC ACID PHOSPHATASE
    ChainsA
    EC Number3.1.3.2
    EngineeredYES
    FragmentUNP RESIDUES 248-286
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsPURCHASED FROM FROM A VENDOR
    SynonymPAP
    SyntheticYES

 Structural Features

(-) Chains, Units

  1
NMR Structure (10x)A
NMR Structure * (1x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2L79)

(-) Sites  (0, 0)

(no "Site" information available for 2L79)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2L79)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2L79)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2L79)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HIS_ACID_PHOSPHAT_2PS00778 Histidine acid phosphatases active site signature.PPAP_HUMAN283-299  1A:36-39
NMR Structure * (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HIS_ACID_PHOSPHAT_2PS00778 Histidine acid phosphatases active site signature.PPAP_HUMAN283-299  1A:36-39

(-) Exons   (2, 2)

NMR Structure (2, 2)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000003363751aENSE00001164343chr3:132036211-132036420210PPAP_HUMAN1-40400--
1.2aENST000003363752aENSE00000778260chr3:132047111-13204720696PPAP_HUMAN41-72320--
1.3ENST000003363753ENSE00000778261chr3:132050491-13205057787PPAP_HUMAN73-101290--
1.4aENST000003363754aENSE00000885862chr3:132051036-132051188153PPAP_HUMAN102-152510--
1.6bENST000003363756bENSE00000778270chr3:132056300-13205639899PPAP_HUMAN153-185330--
1.7bENST000003363757bENSE00000441916chr3:132061396-13206148893PPAP_HUMAN186-216310--
1.8ENST000003363758ENSE00000778272chr3:132063771-132063903133PPAP_HUMAN217-261451A:1-1414
1.9ENST000003363759ENSE00000778273chr3:132068764-13206884683PPAP_HUMAN261-288281A:14-3926
1.10bENST0000033637510bENSE00000778274chr3:132071564-132071667104PPAP_HUMAN289-323350--
1.11cENST0000033637511cENSE00001341899chr3:132075530-1320775962067PPAP_HUMAN323-386640--

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:39
 aligned with PPAP_HUMAN | P15309 from UniProtKB/Swiss-Prot  Length:386

    Alignment length:39
                                   257       267       277         
           PPAP_HUMAN   248 GIHKQKEKSRLQGGVLVNEILNHMKRATQIPSYKKLIMY 286
               SCOP domains --------------------------------------- SCOP domains
               CATH domains --------------------------------------- CATH domains
               Pfam domains His_Phos_2-2l79A01 A:1-39               Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------HIS_ PROSITE
           Transcript 1 (1) Exon 1.8      ------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------Exon 1.9  PDB: A:14-39     Transcript 1 (2)
                 2l79 A   1 GIHKQKEKSRLQGGVLVNEILNHMKRATQIPSYKKLIMY  39
                                    10        20        30         

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2L79)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2L79)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: PGM (50)

(-) Gene Ontology  (31, 31)

NMR Structure(hide GO term definitions)
Chain A   (PPAP_HUMAN | P15309)
molecular function
    GO:0008253    5'-nucleotidase activity    Catalysis of the reaction: a 5'-ribonucleotide + H2O = a ribonucleoside + phosphate.
    GO:0003993    acid phosphatase activity    Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum.
    GO:0033265    choline binding    Interacting selectively and non-covalently with choline, the amine 2-hydroxy-N,N,N-trimethylethanaminium.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0052642    lysophosphatidic acid phosphatase activity    Catalysis of the reaction: lysophosphatidic acid + H2O = phosphate + monoacylglycerol.
    GO:0016791    phosphatase activity    Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate.
    GO:0042131    thiamine phosphate phosphatase activity    Catalysis of the reaction: thiamine phosphate + H2O = thiamine + phosphate.
biological process
    GO:0046085    adenosine metabolic process    The chemical reactions and pathways involving adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes.
    GO:0016311    dephosphorylation    The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
    GO:0009117    nucleotide metabolic process    The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates).
    GO:0060168    positive regulation of adenosine receptor signaling pathway    Any process that activates or increases the frequency, rate or extent of the adenosine receptor signaling pathway. The adenosine receptor pathway is the series of molecular signals generated as a consequence of an adenosine receptor binding to one of its physiological ligands.
    GO:0006144    purine nucleobase metabolic process    The chemical reactions and pathways involving purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine.
    GO:0051930    regulation of sensory perception of pain    Any process that modulates the frequency, rate or extent of the sensory perception of pain, the series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal.
    GO:0006772    thiamine metabolic process    The chemical reactions and pathways involving thiamine (vitamin B1), a water soluble vitamin present in fresh vegetables and meats, especially liver.
cellular component
    GO:0031985    Golgi cisterna    Any of the thin, flattened membrane-bounded compartments that form the central portion of the Golgi complex.
    GO:0045177    apical part of cell    The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0030175    filopodium    Thin, stiff, actin-based protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal or dendritic growth cone, or a dendritic shaft.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0005765    lysosomal membrane    The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm.
    GO:0005764    lysosome    A small lytic vacuole that has cell cycle-independent morphology and is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005771    multivesicular body    A type of endosome in which regions of the limiting endosomal membrane invaginate to form internal vesicles; membrane proteins that enter the internal vesicles are sequestered from the cytoplasm.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0030141    secretory granule    A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell and upon stimulation, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules.
    GO:0012506    vesicle membrane    The lipid bilayer surrounding any membrane-bounded vesicle in the cell.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PPAP_HUMAN | P153091cvi 1nd5 1nd6 2hpa 2l3h 2l77 2mg0 3ppd

(-) Related Entries Specified in the PDB File

2l77 SOLUTION STRUCTURE OF PAP248-286 IN 50% TFE RELATED ID: 17347 RELATED DB: BMRB