2G4N - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Title :   ANOMALOUS SUBSTRUCTURE OF ALPHA-LACTALBUMIN

Authors :   C. Mueller-Dieckmann, M. S. Weiss

Date :   22 Feb 06 (Deposition) - 20 Feb 07 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: E  (1x)
Biol. Unit 6: F  (1x)

Keywords :   Anomalous Substructure Of Alpha-Lactalbumin, Allergen (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Mueller-Dieckmann, S. Panjikar, A. Schmidt, S. Mueller, J. Kuper, A. Geerlof, M. Wilmanns, R. K. Singh, P. A. Tucker, M. S. Weiss
On The Routine Use Of Soft X-Rays In Macromolecular Crystallography. Part Iv. Efficient Determination Of Anomalous Substructures In Biomacromolecules Using Longer X-Ray Wavelengths.
Acta Crystallogr. , Sect. D V. 63 366 2007
PubMed-ID: 17327674 | Reference-DOI: 10.1107/S0907444906055624

Molecule 1 - ALPHA-LACTALBUMIN
	Chains	:	A, B, C, D, E, F
	Organism Common	:	CATTLE
	Organism Scientific	:	BOS TAURUS
	Organism Taxid	:	9913
	Synonym	:	LACTOSE SYNTHASE B PROTEIN, ALLERGEN BOS D 4

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:					E
Biological Unit 6 (1x)	:						F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 8)

No.	Name	Count	Type	Full Name
1	CA	6	Ligand/Ion	CALCIUM ION
2	K	2	Ligand/Ion	POTASSIUM ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	K	-1	Ligand/Ion	POTASSIUM ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	K	-1	Ligand/Ion	POTASSIUM ION

Biological Unit 3 (0, 0)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	K	-1	Ligand/Ion	POTASSIUM ION

Biological Unit 4 (0, 0)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	K	-1	Ligand/Ion	POTASSIUM ION

Biological Unit 5 (0, 0)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	K	-1	Ligand/Ion	POTASSIUM ION

Biological Unit 6 (0, 0)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	K	-1	Ligand/Ion	POTASSIUM ION

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LYS C:79 , ASP C:82 , ASP C:84 , ASP C:87 , ASP C:88 , HOH C:210	BINDING SITE FOR RESIDUE CA C 201
2	AC2	SOFTWARE	LYS D:79 , ASP D:82 , ASP D:84 , ASP D:87 , ASP D:88 , HOH D:212	BINDING SITE FOR RESIDUE CA D 202
3	AC3	SOFTWARE	LYS A:79 , ASP A:82 , ASP A:84 , ASP A:87 , ASP A:88	BINDING SITE FOR RESIDUE CA A 203
4	AC4	SOFTWARE	LYS B:79 , ASP B:82 , ASP B:84 , ASP B:87 , ASP B:88	BINDING SITE FOR RESIDUE CA B 204
5	AC5	SOFTWARE	LYS F:79 , ASP F:82 , ASP F:84 , ASP F:87 , ASP F:88 , HOH F:211 , HOH F:212	BINDING SITE FOR RESIDUE CA F 205
6	AC6	SOFTWARE	LYS E:79 , ASP E:82 , ASP E:84 , ASP E:87 , ASP E:88 , HOH E:212	BINDING SITE FOR RESIDUE CA E 206
7	AC7	SOFTWARE	GLN B:2 , GLY B:35	BINDING SITE FOR RESIDUE K B 207
8	AC8	SOFTWARE	GLN A:2 , GLY A:35	BINDING SITE FOR RESIDUE K A 208

Asymmetric Unit

No.	Residues
1	A:6	-	A:120
2	A:28	-	A:111
3	A:61	-	A:77
4	A:73	-	A:91
5	B:6	-	B:120
6	B:28	-	B:111
7	B:61	-	B:77
8	B:73	-	B:91
9	C:6	-	C:120
10	C:28	-	C:111
11	C:61	-	C:77
12	C:73	-	C:91
13	D:6	-	D:120
14	D:28	-	D:111
15	D:61	-	D:77
16	D:73	-	D:91
17	E:6	-	E:120
18	E:28	-	E:111
19	E:61	-	E:77
20	E:73	-	E:91
21	F:6	-	F:120
22	F:28	-	F:111
23	F:61	-	F:77
24	F:73	-	F:91

(no "Cis Peptide Bond" information available for 2G4N)

Asymmetric Unit (1, 6)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_LALBA_BOVIN_001 *	R	29	Q	LALBA_BOVIN	---	---	A/B/C/D/E/F	R	10	Q
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_LALBA_BOVIN_001 *	R	29	Q	LALBA_BOVIN	---	---	A	R	10	Q
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_LALBA_BOVIN_001 *	R	29	Q	LALBA_BOVIN	---	---	B	R	10	Q
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_LALBA_BOVIN_001 *	R	29	Q	LALBA_BOVIN	---	---	C	R	10	Q
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 4 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_LALBA_BOVIN_001 *	R	29	Q	LALBA_BOVIN	---	---	D	R	10	Q
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 5 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_LALBA_BOVIN_001 *	R	29	Q	LALBA_BOVIN	---	---	E	R	10	Q
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 6 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_LALBA_BOVIN_001 *	R	29	Q	LALBA_BOVIN	---	---	F	R	10	Q
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (2, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LACTALBUMIN_LYSOZYME_2	PS51348	Alpha-lactalbumin / lysozyme C family profile.	LALBA_BOVIN	20-142	6	A:1-122 B:1-122 C:1-122 D:1-122 E:1-122 F:1-122
2	LACTALBUMIN_LYSOZYME_1	PS00128	Alpha-lactalbumin / lysozyme C signature.	LALBA_BOVIN	92-110	6	A:73-91 B:73-91 C:73-91 D:73-91 E:73-91 F:73-91

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LACTALBUMIN_LYSOZYME_2	PS51348	Alpha-lactalbumin / lysozyme C family profile.	LALBA_BOVIN	20-142	1	A:1-122 - - - - -
2	LACTALBUMIN_LYSOZYME_1	PS00128	Alpha-lactalbumin / lysozyme C signature.	LALBA_BOVIN	92-110	1	A:73-91 - - - - -

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LACTALBUMIN_LYSOZYME_2	PS51348	Alpha-lactalbumin / lysozyme C family profile.	LALBA_BOVIN	20-142	1	- B:1-122 - - - -
2	LACTALBUMIN_LYSOZYME_1	PS00128	Alpha-lactalbumin / lysozyme C signature.	LALBA_BOVIN	92-110	1	- B:73-91 - - - -

Biological Unit 3 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LACTALBUMIN_LYSOZYME_2	PS51348	Alpha-lactalbumin / lysozyme C family profile.	LALBA_BOVIN	20-142	1	- - C:1-122 - - -
2	LACTALBUMIN_LYSOZYME_1	PS00128	Alpha-lactalbumin / lysozyme C signature.	LALBA_BOVIN	92-110	1	- - C:73-91 - - -

Biological Unit 4 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LACTALBUMIN_LYSOZYME_2	PS51348	Alpha-lactalbumin / lysozyme C family profile.	LALBA_BOVIN	20-142	1	- - - D:1-122 - -
2	LACTALBUMIN_LYSOZYME_1	PS00128	Alpha-lactalbumin / lysozyme C signature.	LALBA_BOVIN	92-110	1	- - - D:73-91 - -

Biological Unit 5 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LACTALBUMIN_LYSOZYME_2	PS51348	Alpha-lactalbumin / lysozyme C family profile.	LALBA_BOVIN	20-142	1	- - - - E:1-122 -
2	LACTALBUMIN_LYSOZYME_1	PS00128	Alpha-lactalbumin / lysozyme C signature.	LALBA_BOVIN	92-110	1	- - - - E:73-91 -

Biological Unit 6 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LACTALBUMIN_LYSOZYME_2	PS51348	Alpha-lactalbumin / lysozyme C family profile.	LALBA_BOVIN	20-142	1	- - - - - F:1-122
2	LACTALBUMIN_LYSOZYME_1	PS00128	Alpha-lactalbumin / lysozyme C signature.	LALBA_BOVIN	92-110	1	- - - - - F:73-91

Asymmetric Unit (4, 24)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENSBTAT00000007701	1	ENSBTAE00000061891	chr5:34386814-34386973	160	LALBA_BOVIN	1-45	45	6	A:1-26 B:1-26 C:1-26 D:1-26 E:1-26 F:1-26	26 26 26 26 26 26
1.2	ENSBTAT00000007701	2	ENSBTAE00000061892	chr5:34387295-34387453	159	LALBA_BOVIN	45-98	54	6	A:26-79 B:26-79 C:26-79 D:26-79 E:26-79 F:26-79	54 54 54 54 54 54
1.3	ENSBTAT00000007701	3	ENSBTAE00000061893	chr5:34387927-34388002	76	LALBA_BOVIN	98-123	26	6	A:79-104 B:79-104 C:79-104 D:79-104 E:79-104 F:79-104	26 26 26 26 26 26
1.4	ENSBTAT00000007701	4	ENSBTAE00000061894	chr5:34388507-34388835	329	LALBA_BOVIN	123-142	20	6	A:104-122 B:104-122 C:104-122 D:104-122 E:104-122 F:104-122	19 19 19 19 19 19

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:122
 aligned with LALBA_BOVIN | P00711 from UniProtKB/Swiss-Prot  Length:142

    Alignment length:122
                                    29        39        49        59        69        79        89        99       109       119       129       139  
          LALBA_BOVIN    20 EQLTKCEVFRELKDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNNDSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDKVGINYWLAHKALCSEKLDQWLCEK 141
               SCOP domains d2g4na_ A: automated matches                                                                                               SCOP domains
               CATH domains 2g4nA00 A:1-122  [code=1.10.530.10, no name defined]                                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh.....hhhhhhhhhhhhhh.....eee....eee....ee...................hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------Q---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) LACTALBUMIN_LYSOZYME_2  PDB: A:1-122 UniProt: 20-142                                                                       PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------LACTALBUMIN_LYSOZYM------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1  PDB: A:1-26     ----------------------------------------------------Exon 1.3  PDB: A:79-104   ------------------ Transcript 1 (1)
           Transcript 1 (2) -------------------------Exon 1.2  PDB: A:26-79 UniProt: 45-98                 ------------------------Exon 1.4            Transcript 1 (2)
                 2g4n A   1 EQLTKCEVFRELKDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNNDSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDKVGINYWLAHKALCSEKLDQWLCEK 122
                                    10        20        30        40        50        60        70        80        90       100       110       120

Chain B from PDB  Type:PROTEIN  Length:122
 aligned with LALBA_BOVIN | P00711 from UniProtKB/Swiss-Prot  Length:142

    Alignment length:122
                                    29        39        49        59        69        79        89        99       109       119       129       139  
          LALBA_BOVIN    20 EQLTKCEVFRELKDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNNDSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDKVGINYWLAHKALCSEKLDQWLCEK 141
               SCOP domains d2g4nb_ B: automated matches                                                                                               SCOP domains
               CATH domains 2g4nB00 B:1-122  [code=1.10.530.10, no name defined]                                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee....eee....ee...................hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------Q---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) LACTALBUMIN_LYSOZYME_2  PDB: B:1-122 UniProt: 20-142                                                                       PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------LACTALBUMIN_LYSOZYM------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1  PDB: B:1-26     ----------------------------------------------------Exon 1.3  PDB: B:79-104   ------------------ Transcript 1 (1)
           Transcript 1 (2) -------------------------Exon 1.2  PDB: B:26-79 UniProt: 45-98                 ------------------------Exon 1.4            Transcript 1 (2)
                 2g4n B   1 EQLTKCEVFRELKDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNNDSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDKVGINYWLAHKALCSEKLDQWLCEK 122
                                    10        20        30        40        50        60        70        80        90       100       110       120

Chain C from PDB  Type:PROTEIN  Length:122
 aligned with LALBA_BOVIN | P00711 from UniProtKB/Swiss-Prot  Length:142

    Alignment length:122
                                    29        39        49        59        69        79        89        99       109       119       129       139  
          LALBA_BOVIN    20 EQLTKCEVFRELKDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNNDSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDKVGINYWLAHKALCSEKLDQWLCEK 141
               SCOP domains d2g4nc_ C: automated matches                                                                                               SCOP domains
               CATH domains 2g4nC00 C:1-122  [code=1.10.530.10, no name defined]                                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeee..eeee....ee...................hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ---------Q---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) LACTALBUMIN_LYSOZYME_2  PDB: C:1-122 UniProt: 20-142                                                                       PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------LACTALBUMIN_LYSOZYM------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1  PDB: C:1-26     ----------------------------------------------------Exon 1.3  PDB: C:79-104   ------------------ Transcript 1 (1)
           Transcript 1 (2) -------------------------Exon 1.2  PDB: C:26-79 UniProt: 45-98                 ------------------------Exon 1.4            Transcript 1 (2)
                 2g4n C   1 EQLTKCEVFRELKDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNNDSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDKVGINYWLAHKALCSEKLDQWLCEK 122
                                    10        20        30        40        50        60        70        80        90       100       110       120

Chain D from PDB  Type:PROTEIN  Length:122
 aligned with LALBA_BOVIN | P00711 from UniProtKB/Swiss-Prot  Length:142

    Alignment length:122
                                    29        39        49        59        69        79        89        99       109       119       129       139  
          LALBA_BOVIN    20 EQLTKCEVFRELKDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNNDSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDKVGINYWLAHKALCSEKLDQWLCEK 141
               SCOP domains d2g4nd_ D: automated matches                                                                                               SCOP domains
               CATH domains 2g4nD00 D:1-122  [code=1.10.530.10, no name defined]                                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee....eee....ee...................hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ---------Q---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) LACTALBUMIN_LYSOZYME_2  PDB: D:1-122 UniProt: 20-142                                                                       PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------LACTALBUMIN_LYSOZYM------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1  PDB: D:1-26     ----------------------------------------------------Exon 1.3  PDB: D:79-104   ------------------ Transcript 1 (1)
           Transcript 1 (2) -------------------------Exon 1.2  PDB: D:26-79 UniProt: 45-98                 ------------------------Exon 1.4            Transcript 1 (2)
                 2g4n D   1 EQLTKCEVFRELKDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNNDSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDKVGINYWLAHKALCSEKLDQWLCEK 122
                                    10        20        30        40        50        60        70        80        90       100       110       120

Chain E from PDB  Type:PROTEIN  Length:122
 aligned with LALBA_BOVIN | P00711 from UniProtKB/Swiss-Prot  Length:142

    Alignment length:122
                                    29        39        49        59        69        79        89        99       109       119       129       139  
          LALBA_BOVIN    20 EQLTKCEVFRELKDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNNDSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDKVGINYWLAHKALCSEKLDQWLCEK 141
               SCOP domains d2g4ne_ E: automated matches                                                                                               SCOP domains
               CATH domains 2g4nE00 E:1-122  [code=1.10.530.10, no name defined]                                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeee..eeee....ee...................hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh... Sec.struct. author
                 SAPs(SNPs) ---------Q---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) LACTALBUMIN_LYSOZYME_2  PDB: E:1-122 UniProt: 20-142                                                                       PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------LACTALBUMIN_LYSOZYM------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1  PDB: E:1-26     ----------------------------------------------------Exon 1.3  PDB: E:79-104   ------------------ Transcript 1 (1)
           Transcript 1 (2) -------------------------Exon 1.2  PDB: E:26-79 UniProt: 45-98                 ------------------------Exon 1.4            Transcript 1 (2)
                 2g4n E   1 EQLTKCEVFRELKDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNNDSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDKVGINYWLAHKALCSEKLDQWLCEK 122
                                    10        20        30        40        50        60        70        80        90       100       110       120

Chain F from PDB  Type:PROTEIN  Length:122
 aligned with LALBA_BOVIN | P00711 from UniProtKB/Swiss-Prot  Length:142

    Alignment length:122
                                    29        39        49        59        69        79        89        99       109       119       129       139  
          LALBA_BOVIN    20 EQLTKCEVFRELKDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNNDSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDKVGINYWLAHKALCSEKLDQWLCEK 141
               SCOP domains d2g4nf_ F: automated matches                                                                                               SCOP domains
               CATH domains 2g4nF00 F:1-122  [code=1.10.530.10, no name defined]                                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeee..eeee....ee...................hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------Q---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) LACTALBUMIN_LYSOZYME_2  PDB: F:1-122 UniProt: 20-142                                                                       PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------LACTALBUMIN_LYSOZYM------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1  PDB: F:1-26     ----------------------------------------------------Exon 1.3  PDB: F:79-104   ------------------ Transcript 1 (1)
           Transcript 1 (2) -------------------------Exon 1.2  PDB: F:26-79 UniProt: 45-98                 ------------------------Exon 1.4            Transcript 1 (2)
                 2g4n F   1 EQLTKCEVFRELKDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNNDSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDKVGINYWLAHKALCSEKLDQWLCEK 122
                                    10        20        30        40        50        60        70        80        90       100       110       120

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Lysozyme-like (1361)

Superfamily: Lysozyme-like (1361)

Family: C-type lysozyme (738)

Protein domain: automated matches (17)

Cow (Bos taurus) [TaxId: 9913] (2)

1a	d2g4na_	A:
1b	d2g4nb_	B:
1c	d2g4nc_	C:
1d	d2g4nd_	D:
1e	d2g4ne_	E:
1f	d2g4nf_	F:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Lysozyme (1131)

Homologous Superfamily: [code=1.10.530.10, no name defined] (605)

Cattle (Bos taurus) (4)

1a	2g4nA00	A:1-122
1b	2g4nB00	B:1-122
1c	2g4nC00	C:1-122
1d	2g4nD00	D:1-122
1e	2g4nE00	E:1-122
1f	2g4nF00	F:1-122

(no "Pfam Domain" information available for 2G4N)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (LALBA_BOVIN | P00711)

molecular function
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0004461	lactose synthase activity	Catalysis of the reaction: UDP-galactose + D-glucose = UDP + lactose.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0005989	lactose biosynthetic process	The chemical reactions and pathways resulting in the formation of lactose, the disaccharide galactopyranosyl-glucose.
	GO:1903496	response to 11-deoxycorticosterone	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 11-deoxycorticosterone stimulus.
	GO:1903494	response to dehydroepiandrosterone	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a dehydroepiandrosterone stimulus.
	GO:0032355	response to estradiol	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen.
	GO:0032570	response to progesterone	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a progesterone stimulus.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2g4n)

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	2g4n
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	LALBA_BOVIN \| P00711
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	LALBA_BOVIN \| P00711
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	LALBA_BOVIN \| P00711	:	1f6r 1f6s 1hfz

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 8)

Sites (8, 8)

SS Bonds (24, 24)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 6)

PROSITE Motifs (2, 12)

Exons (4, 24)

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Gene Ontology (11, 11)

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