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2G4N
Asym. Unit
Info
Asym.Unit (129 KB)
Biol.Unit 1 (23 KB)
Biol.Unit 2 (23 KB)
Biol.Unit 3 (23 KB)
Biol.Unit 4 (23 KB)
Biol.Unit 5 (23 KB)
Biol.Unit 6 (23 KB)
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(1)
Title
:
ANOMALOUS SUBSTRUCTURE OF ALPHA-LACTALBUMIN
Authors
:
C. Mueller-Dieckmann, M. S. Weiss
Date
:
22 Feb 06 (Deposition) - 20 Feb 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Keywords
:
Anomalous Substructure Of Alpha-Lactalbumin, Allergen
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Mueller-Dieckmann, S. Panjikar, A. Schmidt, S. Mueller, J. Kuper, A. Geerlof, M. Wilmanns, R. K. Singh, P. A. Tucker, M. S. Weiss
On The Routine Use Of Soft X-Rays In Macromolecular Crystallography. Part Iv. Efficient Determination Of Anomalous Substructures In Biomacromolecules Using Longer X-Ray Wavelengths.
Acta Crystallogr. , Sect. D V. 63 366 2007
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
2a: POTASSIUM ION (Ka)
2b: POTASSIUM ION (Kb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
6
Ligand/Ion
CALCIUM ION
2
K
2
Ligand/Ion
POTASSIUM ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS C:79 , ASP C:82 , ASP C:84 , ASP C:87 , ASP C:88 , HOH C:210
BINDING SITE FOR RESIDUE CA C 201
2
AC2
SOFTWARE
LYS D:79 , ASP D:82 , ASP D:84 , ASP D:87 , ASP D:88 , HOH D:212
BINDING SITE FOR RESIDUE CA D 202
3
AC3
SOFTWARE
LYS A:79 , ASP A:82 , ASP A:84 , ASP A:87 , ASP A:88
BINDING SITE FOR RESIDUE CA A 203
4
AC4
SOFTWARE
LYS B:79 , ASP B:82 , ASP B:84 , ASP B:87 , ASP B:88
BINDING SITE FOR RESIDUE CA B 204
5
AC5
SOFTWARE
LYS F:79 , ASP F:82 , ASP F:84 , ASP F:87 , ASP F:88 , HOH F:211 , HOH F:212
BINDING SITE FOR RESIDUE CA F 205
6
AC6
SOFTWARE
LYS E:79 , ASP E:82 , ASP E:84 , ASP E:87 , ASP E:88 , HOH E:212
BINDING SITE FOR RESIDUE CA E 206
7
AC7
SOFTWARE
GLN B:2 , GLY B:35
BINDING SITE FOR RESIDUE K B 207
8
AC8
SOFTWARE
GLN A:2 , GLY A:35
BINDING SITE FOR RESIDUE K A 208
[
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SAPs(SNPs)/Variants
(1, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_LALBA_BOVIN_001 (R10Q, chain A/B/C/D/E/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_LALBA_BOVIN_001
*
R
29
Q
LALBA_BOVIN
---
---
A/B/C/D/E/F
R
10
Q
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: LACTALBUMIN_LYSOZYME_2 (A:1-122,B:1-122,C:1-122,D:1-122,E:...)
2: LACTALBUMIN_LYSOZYME_1 (A:73-91,B:73-91,C:73-91,D:73-91,E:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LACTALBUMIN_LYSOZYME_2
PS51348
Alpha-lactalbumin / lysozyme C family profile.
LALBA_BOVIN
20-142
6
A:1-122
B:1-122
C:1-122
D:1-122
E:1-122
F:1-122
2
LACTALBUMIN_LYSOZYME_1
PS00128
Alpha-lactalbumin / lysozyme C signature.
LALBA_BOVIN
92-110
6
A:73-91
B:73-91
C:73-91
D:73-91
E:73-91
F:73-91
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Exons
(4, 24)
Info
All Exons
Exon 1.1 (A:1-26 | B:1-26 | C:1-26 | D:1-26 ...)
Exon 1.2 (A:26-79 | B:26-79 | C:26-79 | D:26...)
Exon 1.3 (A:79-104 | B:79-104 | C:79-104 | D...)
Exon 1.4 (A:104-122 | B:104-122 | C:104-122 ...)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000007701
1
ENSBTAE00000061891
chr5:
34386814-34386973
160
LALBA_BOVIN
1-45
45
6
A:1-26
B:1-26
C:1-26
D:1-26
E:1-26
F:1-26
26
26
26
26
26
26
1.2
ENSBTAT00000007701
2
ENSBTAE00000061892
chr5:
34387295-34387453
159
LALBA_BOVIN
45-98
54
6
A:26-79
B:26-79
C:26-79
D:26-79
E:26-79
F:26-79
54
54
54
54
54
54
1.3
ENSBTAT00000007701
3
ENSBTAE00000061893
chr5:
34387927-34388002
76
LALBA_BOVIN
98-123
26
6
A:79-104
B:79-104
C:79-104
D:79-104
E:79-104
F:79-104
26
26
26
26
26
26
1.4
ENSBTAT00000007701
4
ENSBTAE00000061894
chr5:
34388507-34388835
329
LALBA_BOVIN
123-142
20
6
A:104-122
B:104-122
C:104-122
D:104-122
E:104-122
F:104-122
19
19
19
19
19
19
[
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SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2g4na_ (A:)
1b: SCOP_d2g4nb_ (B:)
1c: SCOP_d2g4nc_ (C:)
1d: SCOP_d2g4nd_ (D:)
1e: SCOP_d2g4ne_ (E:)
1f: SCOP_d2g4nf_ (F:)
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)
(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Lysozyme-like
(1361)
Superfamily
:
Lysozyme-like
(1361)
Family
:
C-type lysozyme
(738)
Protein domain
:
automated matches
(17)
Cow (Bos taurus) [TaxId: 9913]
(2)
1a
d2g4na_
A:
1b
d2g4nb_
B:
1c
d2g4nc_
C:
1d
d2g4nd_
D:
1e
d2g4ne_
E:
1f
d2g4nf_
F:
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_2g4nA00 (A:1-122)
1b: CATH_2g4nB00 (B:1-122)
1c: CATH_2g4nC00 (C:1-122)
1d: CATH_2g4nD00 (D:1-122)
1e: CATH_2g4nE00 (E:1-122)
1f: CATH_2g4nF00 (F:1-122)
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Lysozyme
(1131)
Homologous Superfamily
:
[code=1.10.530.10, no name defined]
(605)
Cattle (Bos taurus)
(4)
1a
2g4nA00
A:1-122
1b
2g4nB00
B:1-122
1c
2g4nC00
C:1-122
1d
2g4nD00
D:1-122
1e
2g4nE00
E:1-122
1f
2g4nF00
F:1-122
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (129 KB)
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