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(-) Description

Title :  CRYSTAL STRUCTURE OF BOVINE ALPHA-LACTALBUMIN
 
Authors :  E. D. Chrysina, K. Brew, K. R. Acharya
Date :  23 Jun 00  (Deposition) - 13 Dec 00  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Calcium Binding Protein, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  E. D. Chrysina, K. Brew, K. R. Acharya
Crystal Structures Of Apo- And Holo-Bovine Alpha-Lactalbumin At 2. 2-A Resolution Reveal An Effect Of Calcium On Inter-Lobe Interactions.
J. Biol. Chem. V. 275 37021 2000
PubMed-ID: 10896943  |  Reference-DOI: 10.1074/JBC.M004752200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ALPHA-LACTALBUMIN
    ChainsA, B, C, D, E, F
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric/Biological Unit (1, 6)
No.NameCountTypeFull Name
1CA6Ligand/IonCALCIUM ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:79 , ASP A:82 , ASP A:84 , ASP A:87 , ASP A:88 , HOH A:211 , HOH A:212BINDING SITE FOR RESIDUE CA A 201
2AC2SOFTWARELYS B:79 , ASP B:82 , ASP B:84 , ASP B:87 , ASP B:88 , HOH B:207 , HOH B:209BINDING SITE FOR RESIDUE CA B 202
3AC3SOFTWARELYS C:79 , ASP C:82 , ASP C:84 , ASP C:87 , ASP C:88 , HOH C:204 , HOH C:205BINDING SITE FOR RESIDUE CA C 203
4AC4SOFTWARELYS D:79 , ASP D:82 , ASP D:84 , ASP D:87 , ASP D:88 , HOH D:213 , HOH D:214BINDING SITE FOR RESIDUE CA D 204
5AC5SOFTWARELYS E:79 , ASP E:82 , ASP E:84 , ASP E:87 , ASP E:88 , HOH E:208BINDING SITE FOR RESIDUE CA E 205
6AC6SOFTWARELYS F:79 , ASP F:82 , ASP F:84 , ASP F:87 , ASP F:88 , HOH F:214 , HOH F:215BINDING SITE FOR RESIDUE CA F 206

(-) SS Bonds  (24, 24)

Asymmetric/Biological Unit
No.Residues
1A:6 -A:120
2A:28 -A:111
3A:61 -A:77
4A:73 -A:91
5B:6 -B:120
6B:28 -B:111
7B:61 -B:77
8B:73 -B:91
9C:6 -C:120
10C:28 -C:111
11C:61 -C:77
12C:73 -C:91
13D:6 -D:120
14D:28 -D:111
15D:61 -D:77
16D:73 -D:91
17E:6 -E:120
18E:28 -E:111
19E:61 -E:77
20E:73 -E:91
21F:6 -F:120
22F:28 -F:111
23F:61 -F:77
24F:73 -F:91

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1F6S)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 6)

Asymmetric/Biological Unit (1, 6)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_LALBA_BOVIN_001 *R29QLALBA_BOVIN  ---  ---A/B/C/D/E/FR10Q
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (2, 12)

Asymmetric/Biological Unit (2, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1LACTALBUMIN_LYSOZYME_2PS51348 Alpha-lactalbumin / lysozyme C family profile.LALBA_BOVIN20-142
 
 
 
 
 
  6A:1-122
B:1-121
C:1-122
D:1-122
E:1-121
F:1-122
2LACTALBUMIN_LYSOZYME_1PS00128 Alpha-lactalbumin / lysozyme C signature.LALBA_BOVIN92-110
 
 
 
 
 
  6A:73-91
B:73-91
C:73-91
D:73-91
E:73-91
F:73-91

(-) Exons   (4, 24)

Asymmetric/Biological Unit (4, 24)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSBTAT000000077011ENSBTAE00000061891chr5:34386814-34386973160LALBA_BOVIN1-45456A:1-26
B:1-26
C:1-26
D:1-26
E:1-26
F:1-26
26
26
26
26
26
26
1.2ENSBTAT000000077012ENSBTAE00000061892chr5:34387295-34387453159LALBA_BOVIN45-98546A:26-79
B:26-79
C:26-79
D:26-79
E:26-79
F:26-79
54
54
54
54
54
54
1.3ENSBTAT000000077013ENSBTAE00000061893chr5:34387927-3438800276LALBA_BOVIN98-123266A:79-104
B:79-104
C:79-104
D:79-104
E:79-104
F:79-104
26
26
26
26
26
26
1.4ENSBTAT000000077014ENSBTAE00000061894chr5:34388507-34388835329LALBA_BOVIN123-142206A:104-122
B:104-121
C:104-122
D:104-122
E:104-121
F:104-122
19
18
19
19
18
19

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:122
 aligned with LALBA_BOVIN | P00711 from UniProtKB/Swiss-Prot  Length:142

    Alignment length:122
                                    29        39        49        59        69        79        89        99       109       119       129       139  
          LALBA_BOVIN    20 EQLTKCEVFRELKDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNNDSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDKVGINYWLAHKALCSEKLDQWLCEK 141
               SCOP domains d1f6sa_ A: alpha-Lactalbumin                                                                                               SCOP domains
               CATH domains 1f6sA00 A:1-122  [code=1.10.530.10, no name defined]                                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeee..eeee....ee....................hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh... Sec.struct. author
                 SAPs(SNPs) ---------Q---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) LACTALBUMIN_LYSOZYME_2  PDB: A:1-122 UniProt: 20-142                                                                       PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------LACTALBUMIN_LYSOZYM------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1  PDB: A:1-26     ----------------------------------------------------Exon 1.3  PDB: A:79-104   ------------------ Transcript 1 (1)
           Transcript 1 (2) -------------------------Exon 1.2  PDB: A:26-79 UniProt: 45-98                 ------------------------Exon 1.4            Transcript 1 (2)
                 1f6s A   1 EQLTKCEVFRELKDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNNDSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDKVGINYWLAHKALCSEKLDQWLCEK 122
                                    10        20        30        40        50        60        70        80        90       100       110       120  

Chain B from PDB  Type:PROTEIN  Length:121
 aligned with LALBA_BOVIN | P00711 from UniProtKB/Swiss-Prot  Length:142

    Alignment length:121
                                    29        39        49        59        69        79        89        99       109       119       129       139 
          LALBA_BOVIN    20 EQLTKCEVFRELKDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNNDSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDKVGINYWLAHKALCSEKLDQWLCE 140
               SCOP domains d1f6sb_ B: alpha-Lactalbumin                                                                                              SCOP domains
               CATH domains 1f6sB00 B:1-121  [code=1.10.530.10, no name defined]                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee....eee....ee....................hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------Q--------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) LACTALBUMIN_LYSOZYME_2  PDB: B:1-121 UniProt: 20-142                                                                      PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------LACTALBUMIN_LYSOZYM------------------------------ PROSITE (2)
           Transcript 1 (1) Exon 1.1  PDB: B:1-26     ----------------------------------------------------Exon 1.3  PDB: B:79-104   ----------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------Exon 1.2  PDB: B:26-79 UniProt: 45-98                 ------------------------Exon 1.4           Transcript 1 (2)
                 1f6s B   1 EQLTKCEVFRELKDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNNDSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDKVGINYWLAHKALCSEKLDQWLCE 121
                                    10        20        30        40        50        60        70        80        90       100       110       120 

Chain C from PDB  Type:PROTEIN  Length:122
 aligned with LALBA_BOVIN | P00711 from UniProtKB/Swiss-Prot  Length:142

    Alignment length:122
                                    29        39        49        59        69        79        89        99       109       119       129       139  
          LALBA_BOVIN    20 EQLTKCEVFRELKDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNNDSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDKVGINYWLAHKALCSEKLDQWLCEK 141
               SCOP domains d1f6sc_ C: alpha-Lactalbumin                                                                                               SCOP domains
               CATH domains 1f6sC00 C:1-122  [code=1.10.530.10, no name defined]                                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh.hhh.hhhhhhhhhhhhhh.....eee....eee....ee....................hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------Q---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) LACTALBUMIN_LYSOZYME_2  PDB: C:1-122 UniProt: 20-142                                                                       PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------LACTALBUMIN_LYSOZYM------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1  PDB: C:1-26     ----------------------------------------------------Exon 1.3  PDB: C:79-104   ------------------ Transcript 1 (1)
           Transcript 1 (2) -------------------------Exon 1.2  PDB: C:26-79 UniProt: 45-98                 ------------------------Exon 1.4            Transcript 1 (2)
                 1f6s C   1 EQLTKCEVFRELKDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNNDSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDKVGINYWLAHKALCSEKLDQWLCEK 122
                                    10        20        30        40        50        60        70        80        90       100       110       120  

Chain D from PDB  Type:PROTEIN  Length:122
 aligned with LALBA_BOVIN | P00711 from UniProtKB/Swiss-Prot  Length:142

    Alignment length:122
                                    29        39        49        59        69        79        89        99       109       119       129       139  
          LALBA_BOVIN    20 EQLTKCEVFRELKDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNNDSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDKVGINYWLAHKALCSEKLDQWLCEK 141
               SCOP domains d1f6sd_ D: alpha-Lactalbumin                                                                                               SCOP domains
               CATH domains 1f6sD00 D:1-122  [code=1.10.530.10, no name defined]                                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeee..eeee....ee....................hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh... Sec.struct. author
                 SAPs(SNPs) ---------Q---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) LACTALBUMIN_LYSOZYME_2  PDB: D:1-122 UniProt: 20-142                                                                       PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------LACTALBUMIN_LYSOZYM------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1  PDB: D:1-26     ----------------------------------------------------Exon 1.3  PDB: D:79-104   ------------------ Transcript 1 (1)
           Transcript 1 (2) -------------------------Exon 1.2  PDB: D:26-79 UniProt: 45-98                 ------------------------Exon 1.4            Transcript 1 (2)
                 1f6s D   1 EQLTKCEVFRELKDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNNDSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDKVGINYWLAHKALCSEKLDQWLCEK 122
                                    10        20        30        40        50        60        70        80        90       100       110       120  

Chain E from PDB  Type:PROTEIN  Length:121
 aligned with LALBA_BOVIN | P00711 from UniProtKB/Swiss-Prot  Length:142

    Alignment length:121
                                    29        39        49        59        69        79        89        99       109       119       129       139 
          LALBA_BOVIN    20 EQLTKCEVFRELKDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNNDSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDKVGINYWLAHKALCSEKLDQWLCE 140
               SCOP domains d1f6se_ E: alpha-Lactalbumin                                                                                              SCOP domains
               CATH domains 1f6sE00 E:1-121  [code=1.10.530.10, no name defined]                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee....eee....ee....................hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------Q--------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) LACTALBUMIN_LYSOZYME_2  PDB: E:1-121 UniProt: 20-142                                                                      PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------LACTALBUMIN_LYSOZYM------------------------------ PROSITE (2)
           Transcript 1 (1) Exon 1.1  PDB: E:1-26     ----------------------------------------------------Exon 1.3  PDB: E:79-104   ----------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------Exon 1.2  PDB: E:26-79 UniProt: 45-98                 ------------------------Exon 1.4           Transcript 1 (2)
                 1f6s E   1 EQLTKCEVFRELKDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNNDSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDKVGINYWLAHKALCSEKLDQWLCE 121
                                    10        20        30        40        50        60        70        80        90       100       110       120 

Chain F from PDB  Type:PROTEIN  Length:122
 aligned with LALBA_BOVIN | P00711 from UniProtKB/Swiss-Prot  Length:142

    Alignment length:122
                                    29        39        49        59        69        79        89        99       109       119       129       139  
          LALBA_BOVIN    20 EQLTKCEVFRELKDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNNDSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDKVGINYWLAHKALCSEKLDQWLCEK 141
               SCOP domains d1f6sf_ F: alpha-Lactalbumin                                                                                               SCOP domains
               CATH domains 1f6sF00 F:1-122  [code=1.10.530.10, no name defined]                                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee....eee....ee....................hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------Q---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) LACTALBUMIN_LYSOZYME_2  PDB: F:1-122 UniProt: 20-142                                                                       PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------LACTALBUMIN_LYSOZYM------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1  PDB: F:1-26     ----------------------------------------------------Exon 1.3  PDB: F:79-104   ------------------ Transcript 1 (1)
           Transcript 1 (2) -------------------------Exon 1.2  PDB: F:26-79 UniProt: 45-98                 ------------------------Exon 1.4            Transcript 1 (2)
                 1f6s F   1 EQLTKCEVFRELKDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNNDSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDKVGINYWLAHKALCSEKLDQWLCEK 122
                                    10        20        30        40        50        60        70        80        90       100       110       120  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 6)

Asymmetric/Biological Unit

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1F6S)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (LALBA_BOVIN | P00711)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0004461    lactose synthase activity    Catalysis of the reaction: UDP-galactose + D-glucose = UDP + lactose.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0005989    lactose biosynthetic process    The chemical reactions and pathways resulting in the formation of lactose, the disaccharide galactopyranosyl-glucose.
    GO:1903496    response to 11-deoxycorticosterone    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 11-deoxycorticosterone stimulus.
    GO:1903494    response to dehydroepiandrosterone    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a dehydroepiandrosterone stimulus.
    GO:0032355    response to estradiol    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by estradiol, a C18 steroid hormone hydroxylated at C3 and C17 that acts as a potent estrogen.
    GO:0032570    response to progesterone    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a progesterone stimulus.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LALBA_BOVIN | P007111f6r 1hfz 2g4n

(-) Related Entries Specified in the PDB File

1a4v 1A4V CONTAINS HUMAN ALPHA-LACTALBUMIN
1alc 1ALC CONTAINS BABOON ALPHA-LACTALBUMIN
1f6r 1F6R CONTAINS THE APO FORM OF THE SAME PROTEIN.
1hfx 1HFX CONTAINS GGUINEA-PIG ALPHA-LACTALBUMIN
1hfy 1HFY CONTAINS GGOAT ALPHA-LACTALBUMIN
1hfz 1HFZ CONTAINS RECOMBINANT BOVINE ALPHA-LACTALBUMIN