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2G4N
Biol. Unit 6
Info
Asym.Unit (129 KB)
Biol.Unit 1 (23 KB)
Biol.Unit 2 (23 KB)
Biol.Unit 3 (23 KB)
Biol.Unit 4 (23 KB)
Biol.Unit 5 (23 KB)
Biol.Unit 6 (23 KB)
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(1)
Title
:
ANOMALOUS SUBSTRUCTURE OF ALPHA-LACTALBUMIN
Authors
:
C. Mueller-Dieckmann, M. S. Weiss
Date
:
22 Feb 06 (Deposition) - 20 Feb 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Keywords
:
Anomalous Substructure Of Alpha-Lactalbumin, Allergen
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Mueller-Dieckmann, S. Panjikar, A. Schmidt, S. Mueller, J. Kuper, A. Geerlof, M. Wilmanns, R. K. Singh, P. A. Tucker, M. S. Weiss
On The Routine Use Of Soft X-Rays In Macromolecular Crystallography. Part Iv. Efficient Determination Of Anomalous Substructures In Biomacromolecules Using Longer X-Ray Wavelengths.
Acta Crystallogr. , Sect. D V. 63 366 2007
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
2a: POTASSIUM ION (Ka)
2b: POTASSIUM ION (Kb)
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Sites
(1, 1)
Info
All Sites
1: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC5
SOFTWARE
LYS F:79 , ASP F:82 , ASP F:84 , ASP F:87 , ASP F:88 , HOH F:211 , HOH F:212
BINDING SITE FOR RESIDUE CA F 205
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_LALBA_BOVIN_001 (R10Q, chain F, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_LALBA_BOVIN_001
*
R
29
Q
LALBA_BOVIN
---
---
F
R
10
Q
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: LACTALBUMIN_LYSOZYME_2 (F:1-122)
2: LACTALBUMIN_LYSOZYME_1 (F:73-91)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LACTALBUMIN_LYSOZYME_2
PS51348
Alpha-lactalbumin / lysozyme C family profile.
LALBA_BOVIN
20-142
1
-
-
-
-
-
F:1-122
2
LACTALBUMIN_LYSOZYME_1
PS00128
Alpha-lactalbumin / lysozyme C signature.
LALBA_BOVIN
92-110
1
-
-
-
-
-
F:73-91
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2g4na_ (A:)
1b: SCOP_d2g4nb_ (B:)
1c: SCOP_d2g4nc_ (C:)
1d: SCOP_d2g4nd_ (D:)
1e: SCOP_d2g4ne_ (E:)
1f: SCOP_d2g4nf_ (F:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Lysozyme-like
(1361)
Superfamily
:
Lysozyme-like
(1361)
Family
:
C-type lysozyme
(738)
Protein domain
:
automated matches
(17)
Cow (Bos taurus) [TaxId: 9913]
(2)
1a
d2g4na_
A:
1b
d2g4nb_
B:
1c
d2g4nc_
C:
1d
d2g4nd_
D:
1e
d2g4ne_
E:
1f
d2g4nf_
F:
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_2g4nA00 (A:1-122)
1b: CATH_2g4nB00 (B:1-122)
1c: CATH_2g4nC00 (C:1-122)
1d: CATH_2g4nD00 (D:1-122)
1e: CATH_2g4nE00 (E:1-122)
1f: CATH_2g4nF00 (F:1-122)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Lysozyme
(1131)
Homologous Superfamily
:
[code=1.10.530.10, no name defined]
(605)
Cattle (Bos taurus)
(4)
1a
2g4nA00
A:1-122
1b
2g4nB00
B:1-122
1c
2g4nC00
C:1-122
1d
2g4nD00
D:1-122
1e
2g4nE00
E:1-122
1f
2g4nF00
F:1-122
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain F
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (129 KB)
Header - Asym.Unit
Biol.Unit 1 (23 KB)
Header - Biol.Unit 1
Biol.Unit 2 (23 KB)
Header - Biol.Unit 2
Biol.Unit 3 (23 KB)
Header - Biol.Unit 3
Biol.Unit 4 (23 KB)
Header - Biol.Unit 4
Biol.Unit 5 (23 KB)
Header - Biol.Unit 5
Biol.Unit 6 (23 KB)
Header - Biol.Unit 6
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