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(-) Description

Title :  CRYSTAL STRUCTURE OF THE HIV-1 NEUTRALIZING ANTIBODY D5 FAB BOUND TO THE GP41 INNER-CORE MIMETIC 5-HELIX
 
Authors :  M. A. Luftig, M. Mattu, P. Di Giovine, R. Geleziunas, R. Hrin, G. Barbato, E. Bianchi, M. D. Miller, A. Pessi, A. Carfi
Date :  11 May 06  (Deposition) - 16 Oct 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B#,H,L
Biol. Unit 1:  A,H,L  (1x)
( #:   chains that contain no standard or modified protein/DNA/RNA residue)
 
Keywords :  Immune System, Immunoglobulin Complex, Neutralization, Immunoglobulin, Envelope Protein, Hiv, Gp41, Aids, Mhc I, Membrane, Transmembrane, Immunoglobulin Domain (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. A. Luftig, M. Mattu, P. Di Giovine, R. Geleziunas, R. Hrin, G. Barbato, E. Bianchi, M. D. Miller, A. Pessi, A. Carfi
Structural Basis For Hiv-1 Neutralization By A Gp41 Fusion Intermediate-Directed Antibody
Nat. Struct. Mol. Biol. V. 13 740 2006
PubMed-ID: 16862157  |  Reference-DOI: 10.1038/NSMB1127

(-) Compounds

Molecule 1 - D5
    Chains: H
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: 293-EBNA
    Expression System Plasmid: PEU3.2, PEU1.2
    Expression System Taxid: 9606
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: IGG DERIVED FROM HUMAN B CELL LIBRARY
    Synonym: FAB HEAVY CHAIN
 
Molecule 2 - D5
    Chains: L
    Engineered: YES
    Expression System: HUMAN
    Expression System Cell Line: 293-EBNA
    Expression System Plasmid: PEU3.2, PEU1.2
    Expression System Taxid: 9606
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: IGG DERIVED FROM HUMAN B CELL LIBRARY
    Synonym: FAB LIGHT CHAIN
 
Molecule 3 - TRANSMEMBRANE GLYCOPROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: 5-HELIX, RESIDUES 543-582 AND 625-662
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676
    Other Details: SEQUENCE DERIVED FROM GENBANK P04578 WHERE THREE REGIONS EACH EQUIVALENT TO AA 543-582 ARE INTERSPERSED BY TWO DIFFERENT REGIONS (EACH EQUIVALENT TO AA 625-662). LINKERS GGSGG AND GSSGG JOIN THE REGIONS AND ALTERNATE STARTING WITH GGSGG. A METHIONINE INITIATES AND A TAIL CONTAINS GGHHHHHHG
    Strain: HXB2
    Synonym: GP41

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : AB#HL
Biological Unit 1 (1x): A HL
( #:   chains that contain no standard or modified protein/DNA/RNA residue)
 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:145 , ASN A:146 , GLN A:202 , TRP A:206 , LYS A:209 , HOH A:2045 , LEU H:100 , TRP L:32 , TYR L:91BINDING SITE FOR RESIDUE GOL B1582

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1H:22 -H:92
2H:140 -H:196
3L:23 -L:88
4L:133 -L:193

(-) Cis Peptide Bonds  (5, 5)

Asymmetric Unit
No.Residues
1Phe H:146 -Pro H:147
2Glu H:148 -Pro H:149
3Ser L:7 -Pro L:8
4Tyr L:94 -Pro L:95
5Tyr L:139 -Pro L:140

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2CMR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2CMR)

(-) Exons   (0, 0)

(no "Exon" information available for 2CMR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:195
 aligned with D0VWW0_9HIV1 | D0VWW0 from UniProtKB/TrEMBL  Length:226

    Alignment length:216
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210      
        D0VWW0_9HIV1      1 MQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAGGSGGHTTWMEWDREINNYTSLIHSLIEESQNQQEKNEQELLEGSSGGQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAGGSGGHTTWMEWDREINNYTSLIHSLIEESQNQQEKNEQELLEGSSGGQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARIL  216
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.----hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.---------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.--..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                2cmr A    1 MQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAG------TWMEWDREINNYTSLIHSLIEESQNQQEKNEQELLE----GQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARIL---------WMEWDREINNYTSLIHSLIEESQNQQEKNEQELLEG--GGQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARIL  216
                                    10        20        30        40 |      50        60        70        80   |    90       100       110       120       | -       140       150       160       170  |  | 180       190       200       210      
                                                                    42     49                                 84   89                                    128       138                                173  |                                        
                                                                                                                                                                                                         176                                        


Chain A from PDB  Type:PROTEIN  Length:195
 aligned with ENV_HV1H2 | P04578 from UniProtKB/Swiss-Prot  Length:856

    Alignment length:598
                                   267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777       787       797       807       817       827       837       847        
           ENV_HV1H2    258 QLLLNGSLAEEEVVIRSVNFTDNAKTIIVQLNTSVEINCTRPNNNTRKRIRIQRGPGRAFVTIGKIGNMRQAHCNISRAKWNNTLKQIASKLREQFGNNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWFNSTWSTEGSNNTEGSDTITLPCRIKQIINMWQKVGKAMYAPPISGQIRCSSNITGLLLTRDGGNSNNESEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWNHTTWMEWDREINNYTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGERDRDRSIRLVNGSLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRVIEVVQGACRAIRHIPRRIRQGLERIL  855
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh----hhhhhhhhhhh-----------------------------------------------hh--hhhhhhhhhh.-----------------------------------------hhhhhhh---------------------hhhh---------hhhhhhhhhhhhhhhh----------hhhhhhhh.------------------------------------------------------------------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.----------------------------------------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.-------------------------------------------------------------------------..--------hhhhh-----------------------------hhhhhh-----------hhh---------------------------hhhhhhh---hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2cmr A    1 MQLLSGIVQQQNNLLRAI----EAQQHLLQLTV-----------------------------------------------WG--IKQLQARILAG-----------------------------------------TWMEWDR---------------------EINN---------YTSLIHSLIEESQNQQ----------EKNEQELLE------------------------------------------------------------------------GQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARIL----------------------------------------------WMEWDREINNYTSLIHSLIEESQNQQEKNEQELLEG-------------------------------------------------------------------------GG--------QLLSG-----------------------------IVQQQN-----------NLL---------------------------RAIEAQQ---HLLQLTVWGIKQLQARIL  216
                                    10       | -  |     26  |      -         -         -         -         -||  |   37    |    -         -         -         -      | 52  |      -         -    |  | -       |62        72  |      -   |    82 |       -         -         -         -         -         -         -    |   94       104       114       124   |     -         -         -         -         -|      147       157       167     |   -         -         -         -         -         -         -       176|      178   |     -         -         -   |    |-         -| |      -         -         -|     |  -|      208        
                                            18   19        29                                              30| 32        42                                        49    55                    56 59        60             75         76      84                                                                       89                                    128                                            138                                173                                                                       176|      178 182                           183  188         189 |                         192   198 199                 
                                                                                                            31                                                                                                                                                                                                                                                                                                                                                                                                            177                                                           191                                                       


Chain H from PDB  Type:PROTEIN  Length:204
                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 2cmrH01 H:3-113 Immunoglobulins                                                                                      2cmrH02 H:114-211 Immunoglobulins                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..ee...eee.....eeeeee.hhhhhhhheeeeeee......eeeeee......eee.hhhh..eeeeeehhh.eeeeee...hhhhheeeeeeeee....eeeee...eeeee........eeeee..eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee......eeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                2cmr H    3 QLVQSGAEVRKPGASVKVSCKASGDTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANYAQAFQGRVTITANESTSTAYMELSSLRSEDTAIYYCARDNPTLLGSDYWGAGTLVTVSSASTKGPSVFPLAGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSTQTYICNVNHKPSNTKVDKRV  211
                                    12        22        32        42        52|       61        71        81 |||    88        98  ||   106       116       134       144       154       164       174       184  ||   197       207    
                                                                            52A                            82A||               100A|                      125|                                                  187|                    
                                                                                                            82B|                100B                       134                                                   191                    
                                                                                                             82C                                                                                                                        


Chain L from PDB  Type:PROTEIN  Length:208
                                                                                                                                                                                                                                                 
               SCOP domains d2cmrl1 L:1-106A automated matches                                                                         d2cmrl2 L:107-207 automated matches                                                                   SCOP domains
               CATH domains 2cmrL01 L:1-107 Immunoglobulins                                                                             2cmrL02 L:108-207 Immunoglobulins                                                                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee.......eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhh.eeeeee......ee...eeeee.......eeeee..hhhhhh..eeeeeeeeeee........eee...ee...eeeee.........eeeeeeeeeehhhhhhh..eeeee........eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2cmr L    1 DIQMTQSPSTLSASIGDRVTITCRASEGIYHWLAWYQQKPGKAPKLLIYKASSLASGAPSRFSGSGSGTDFTLTISSLQPDDFATYYCQQYSNYPLTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKS  207
                                    10        20        30        40        50        60        70        80        90       100      |109       119       129       139       149       159       169       179       189       199        
                                                                                                                                   106A
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2CMR)

(-) Gene Ontology  (32, 32)

Asymmetric Unit(hide GO term definitions)
Chain A   (ENV_HV1H2 | P04578)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
biological process
    GO:0090527    actin filament reorganization    A process that is carried out at the cellular level which results in dynamic structural changes to the arrangement of actin filaments.
    GO:0075512    clathrin-dependent endocytosis of virus by host cell    Any clathrin-mediated endocytosis that is involved in the uptake of a virus into a host cell. Begins by invagination of a specific region of the host cell plasma membrane around the bound virus to form a clathrin-coated pit, which then pinches off to form a clathrin-coated endocytic vesicle containing the virus.
    GO:0075509    endocytosis involved in viral entry into host cell    Any endocytosis that is involved in the uptake of a virus into a host cell.
    GO:0030260    entry into host cell    The invasion by an organism of a cell of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0030683    evasion or tolerance by virus of host immune response    Any process, either active or passive, by which a virus avoids the effects of the host organism's immune response. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0039654    fusion of virus membrane with host endosome membrane    Fusion of a virus membrane with a host endosome membrane. Occurs after internalization of the virus through the endosomal pathway, and results in release of the virus contents into the cell.
    GO:0019064    fusion of virus membrane with host plasma membrane    Fusion of a viral membrane with the host cell membrane during viral entry. Results in release of the virion contents into the cytoplasm.
    GO:0039663    membrane fusion involved in viral entry into host cell    Merging of the virion membrane and a host membrane (host plasma membrane or host organelle membrane) that is involved in the uptake of a virus into a host cell.
    GO:1903905    positive regulation of establishment of T cell polarity    Any process that activates or increases the frequency, rate or extent of establishment of T cell polarity.
    GO:1903908    positive regulation of plasma membrane raft polarization    Any process that activates or increases the frequency, rate or extent of plasma membrane raft polarization.
    GO:1903911    positive regulation of receptor clustering    Any process that activates or increases the frequency, rate or extent of receptor clustering.
    GO:0002223    stimulatory C-type lectin receptor signaling pathway    Any series of molecular signals generated as a consequence of binding to a C-type lectin receptor capable of cellular activation.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0019058    viral life cycle    A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle, decoding of genome information, translation of viral mRNA by host ribosomes, genome replication, and assembly and release of viral particles containing the genome.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019082    viral protein processing    Any protein maturation process achieved by the cleavage of a peptide bond or bonds within a viral protein.
    GO:0019068    virion assembly    A late phase of the viral life cycle during which all the components necessary for the formation of a mature virion collect at a particular site in the cell and the basic structure of the virus particle is formed.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0000139    Golgi membrane    The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005789    endoplasmic reticulum membrane    The lipid bilayer surrounding the endoplasmic reticulum.
    GO:0044174    host cell endosome    A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to host cell lysosomes for degradation.
    GO:0044175    host cell endosome membrane    The lipid bilayer surrounding a host cell endosome.
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0020002    host cell plasma membrane    The plasma membrane surrounding a host cell.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019031    viral envelope    The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.
    GO:0055036    virion membrane    The lipid bilayer surrounding a virion.

Chain A   (D0VWW0_9HIV1 | D0VWW0)

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  2cmr
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  ENV_HV1H2 | P04578
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ENV_HV1H2 | P04578: 1aik 1df4 1df5 1dlb 1g9m 1gc1 1gzl 1k33 1k34 1mzi 1opn 1opt 1opw 1rzj 2me1 2mg1 2mg2 2mg3 2ny7 2pv6 2x7r 2xra 2zzo 3d0v 3dnl 3dnn 3dno 3dro 3idx 3idy 3j70 3tyg 3vie 4jpj 4jpk 4ydv 4zto 5bn0 5c0r 5c0s 5cil 5cin 5cmu 5cmz 5cn0 5dd0 5ghw 5h0n 5hfl 5hm1 5ivx 5ka5 5ka6 5x08
UniProtKB/TrEMBL
        D0VWW0_9HIV1 | D0VWW0: 2mk3 3ma9 3mac

(-) Related Entries Specified in the PDB File

1aik HIV GP41 CORE STRUCTURE
1df4 INTERACTIONS BETWEEN HIV-1 GP41 CORE AND DETERGENTS AND THEIR IMPLICATIONS FOR MEMBRANE FUSION
1df5 INTERACTIONS BETWEEN HIV-1 GP41 CORE AND DETERGENTS AND THEIR IMPLICATIONS FOR MEMBRANE FUSION
1dlb HELICAL INTERACTIONS IN THE HIV-1 GP41 CORE REVEALS STRUCTURAL BASIS FOR THE INHIBITORY ACTIVITY OF GP41 PEPTIDES
1g9m HIV-1 HXBC2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4AND INDUCED NEUTRALIZING ANTIBODY 17B
1gc1 HIV-1 GP120 CORE COMPLEXED WITH CD4 AND A NEUTRALIZING HUMAN ANTIBODY
1gzl CRYSTAL STRUCTURE OF C14LINKMID/IQN17: A CROSS-LINKED INHIBITOR OF HIV-1 ENTRY BOUND TO THE GP41 HYDROPHOBIC POCKET
1k33 CRYSTAL STRUCTURE ANALYSIS OF THE GP41 CORE MUTANT
1k34 CRYSTAL STRUCTURE ANALYSIS OF GP41 CORE MUTANT
1mzi SOLUTION ENSEMBLE STRUCTURES OF HIV-1 GP41 2F5 MAB EPITOPE
1opn THEORETICAL MODEL OF CCR5 RECEPTOR IN COMPLEX WITH HIVGP120 ENVELOPE GLYCOPROTEIN AND CD4 RECEPTOR
1opt THEORETICAL MODEL OF CCR5 RECEPTOR IN COMPLEX WITH HIVGP120 ENVELOPE GLYCOPROTEIN AND CD4 RECEPTOR
1opw THEORETICAL MODEL OF CCR5 RECEPTOR IN COMPLEX WITH HIVGP120 ENVELOPE GLYCOPROTEIN AND CD4 RECEPTOR
1rzj HIV-1 HXBC2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4AND INDUCED NEUTRALIZING ANTIBODY 17B