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(-) Description

Title :  NMR ASSIGNMENT AND STRUCTURE OF A PEPTIDE DERIVED FROM THE MEMBRANE PROXIMAL EXTERNAL REGION OF HIV-1 GP41 IN THE PRESENCE OF HEXAFLUOROISOPROPANOL
 
Authors :  S. Serrano, B. Apellaniz, N. L. Huarte, J. L. Nieva, M. A. Jimenez
Date :  24 Oct 13  (Deposition) - 25 Mar 15  (Release) - 17 Jun 15  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Hiv-1 Gp41 Protein, Neutralizing Epitope, Peptide Vaccine, Mper, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Apellaniz, E. Rujas, S. Serrano, K. Morante, K. Tsumoto, J. M. Caaveiro, M. A. Jimenez, J. L. Nieva
The Atomic Structure Of The Hiv-1 Gp41 Transmembrane Domain And Its Connection To The Immunogenic Membrane-Proximal External Region.
J. Biol. Chem. V. 290 12999 2015
PubMed-ID: 25787074  |  Reference-DOI: 10.1074/JBC.M115.644351

(-) Compounds

Molecule 1 - TRANSMEMBRANE PROTEIN GP41
    Chains: A
    Engineered: YES
    Organism Common: HIV-1
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2MG2)

(-) Sites  (0, 0)

(no "Site" information available for 2MG2)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2MG2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2MG2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2MG2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2MG2)

(-) Exons   (0, 0)

(no "Exon" information available for 2MG2)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:28
                                                           
               SCOP domains ---------------------------- SCOP domains
               CATH domains ---------------------------- CATH domains
               Pfam domains ---------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------- SAPs(SNPs)
                    PROSITE ---------------------------- PROSITE
                 Transcript ---------------------------- Transcript
                  2mg2 A  1 KKKNWFDITNWLWYIKLFIMIVGGLVKK 28
                                    10        20
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2MG2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2MG2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2MG2)

(-) Gene Ontology  (32, 36)

NMR Structure(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ENV_HV1H2 | P04578: 1aik 1df4 1df5 1dlb 1g9m 1gc1 1gzl 1k33 1k34 1mzi 1opn 1opt 1opw 1rzj 2cmr 2me1 2mg1 2mg3 2ny7 2pv6 2x7r 2xra 2zzo 3d0v 3dnl 3dnn 3dno 3dro 3idx 3idy 3j70 3tyg 3vie 4jpj 4jpk 4ydv 4zto 5bn0 5c0r 5c0s 5cil 5cin 5cmu 5cmz 5cn0 5dd0 5ghw 5h0n 5hfl 5hm1 5ivx 5ka5 5ka6 5x08
        S4TEY8_9HIV1 | S4TEY8: 2mg3

(-) Related Entries Specified in the PDB File

2mg1
2mg3 RELATED ID: 19581 RELATED DB: BMRB RELATED ID: 19582 RELATED DB: BMRB RELATED ID: 19583 RELATED DB: BMRB