2CMR - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THE HIV-1 NEUTRALIZING ANTIBODY D5 FAB THE GP41 INNER-CORE MIMETIC 5-HELIX
• Keywords: IMMUNE SYSTEM, IMMUNOGLOBULIN COMPLEX, NEUTRALIZATION, IMMUNOGLOBULIN, ENVELOPE PROTEIN, HIV, GP41, AIDS, MHC I, M TRANSMEMBRANE, IMMUNOGLOBULIN DOMAIN
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2CMR	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	TRANSMEMBRANE GLYCOPROTEIN	A	195	1573	0
2	Protein	D5	H	204	1504	0
3	Protein	D5	L	208	1597	0
4	Ligand	TRANSMEMBRANE GLYCOPROTEIN	A	1	0	6
5	Water			283	0	283
total				891	4674	289

Proteins

Unit 1	MET 1 GLN 2 LEU 3 LEU 4 SER 5 GLY 6 ILE 7 VAL 8 GLN 9 GLN 10 GLN 11 ASN 12 ASN 13 LEU 14 LEU 15 ARG 16 ALA 17 ILE 18 GLU 19 ALA 20 GLN 21 GLN 22 HIS 23 LEU 24 LEU 25 GLN 26 LEU 27 THR 28 VAL 29 TRP 30 GLY 31 ILE 32 LYS 33 GLN 34 LEU 35 GLN 36 ALA 37 ARG 38 ILE 39 LEU 40 ALA 41 GLY 42 THR 49 TRP 50 MET 51 GLU 52 TRP 53 ASP 54 ARG 55 GLU 56 ILE 57 ASN 58 ASN 59 TYR 60 THR 61 SER 62 LEU 63 ILE 64 HIS 65 SER 66 LEU 67 ILE 68 GLU 69 GLU 70 SER 71 GLN 72 ASN 73 GLN 74 GLN 75 GLU 76 LYS 77 ASN 78 GLU 79 GLN 80 GLU 81 LEU 82 LEU 83 GLU 84 GLY 89 GLN 90 LEU 91 LEU 92 SER 93 GLY 94 ILE 95 VAL 96 GLN 97 GLN 98 GLN 99 ASN 100 ASN 101 LEU 102 LEU 103 ARG 104 ALA 105 ILE 106 GLU 107 ALA 108 GLN 109 GLN 110 HIS 111 LEU 112 LEU 113 GLN 114 LEU 115 THR 116 VAL 117 TRP 118 GLY 119 ILE 120 LYS 121 GLN 122 LEU 123 GLN 124 ALA 125 ARG 126 ILE 127 LEU 128 TRP 138 MET 139 GLU 140 TRP 141 ASP 142 ARG 143 GLU 144 ILE 145 ASN 146 ASN 147 TYR 148 THR 149 SER 150 LEU 151 ILE 152 HIS 153 SER 154 LEU 155 ILE 156 GLU 157 GLU 158 SER 159 GLN 160 ASN 161 GLN 162 GLN 163 GLU 164 LYS 165 ASN 166 GLU 167 GLN 168 GLU 169 LEU 170 LEU 171 GLU 172 GLY 173 GLY 176 GLY 177 GLN 178 LEU 179 LEU 180 SER 181 GLY 182 ILE 183 VAL 184 GLN 185 GLN 186 GLN 187 ASN 188 ASN 189 LEU 190 LEU 191 ARG 192 ALA 193 ILE 194 GLU 195 ALA 196 GLN 197 GLN 198 HIS 199 LEU 200 LEU 201 GLN 202 LEU 203 THR 204 VAL 205 TRP 206 GLY 207 ILE 208 LYS 209 GLN 210 LEU 211 GLN 212 ALA 213 ARG 214 ILE 215 LEU 216
Unit 2	GLN 3 LEU 4 VAL 5 GLN 6 SER 7 GLY 8 ALA 9 GLU 10 VAL 11 ARG 12 LYS 13 PRO 14 GLY 15 ALA 16 SER 17 VAL 18 LYS 19 VAL 20 SER 21 CYS 22 LYS 23 ALA 24 SER 25 GLY 26 ASP 27 THR 28 PHE 29 SER 30 SER 31 TYR 32 ALA 33 ILE 34 SER 35 TRP 36 VAL 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 GLN 43 GLY 44 LEU 45 GLU 46 TRP 47 MET 48 GLY 49 GLY 50 ILE 51 ILE 52 PRO 52A ILE 53 PHE 54 GLY 55 THR 56 ALA 57 ASN 58 TYR 59 ALA 60 GLN 61 ALA 62 PHE 63 GLN 64 GLY 65 ARG 66 VAL 67 THR 68 ILE 69 THR 70 ALA 71 ASN 72 GLU 73 SER 74 THR 75 SER 76 THR 77 ALA 78 TYR 79 MET 80 GLU 81 LEU 82 SER 82A SER 82B LEU 82C ARG 83 SER 84 GLU 85 ASP 86 THR 87 ALA 88 ILE 89 TYR 90 TYR 91 CYS 92 ALA 93 ARG 94 ASP 95 ASN 96 PRO 97 THR 98 LEU 99 LEU 100 GLY 100A SER 100B ASP 101 TYR 102 TRP 103 GLY 104 ALA 105 GLY 106 THR 107 LEU 108 VAL 109 THR 110 VAL 111 SER 112 SER 113 ALA 114 SER 115 THR 116 LYS 117 GLY 118 PRO 119 SER 120 VAL 121 PHE 122 PRO 123 LEU 124 ALA 125 GLY 134 THR 135 ALA 136 ALA 137 LEU 138 GLY 139 CYS 140 LEU 141 VAL 142 LYS 143 ASP 144 TYR 145 PHE 146 PRO 147 GLU 148 PRO 149 VAL 150 THR 151 VAL 152 SER 153 TRP 154 ASN 155 SER 156 GLY 157 ALA 158 LEU 159 THR 160 SER 161 GLY 162 VAL 163 HIS 164 THR 165 PHE 166 PRO 167 ALA 168 VAL 169 LEU 170 GLN 171 SER 172 SER 173 GLY 174 LEU 175 TYR 176 SER 177 LEU 178 SER 179 SER 180 VAL 181 VAL 182 THR 183 VAL 184 PRO 185 SER 186 SER 187 THR 191 GLN 192 THR 193 TYR 194 ILE 195 CYS 196 ASN 197 VAL 198 ASN 199 HIS 200 LYS 201 PRO 202 SER 203 ASN 204 THR 205 LYS 206 VAL 207 ASP 208 LYS 209 ARG 210 VAL 211
Unit 3	ASP 1 ILE 2 GLN 3 MET 4 THR 5 GLN 6 SER 7 PRO 8 SER 9 THR 10 LEU 11 SER 12 ALA 13 SER 14 ILE 15 GLY 16 ASP 17 ARG 18 VAL 19 THR 20 ILE 21 THR 22 CYS 23 ARG 24 ALA 25 SER 26 GLU 27 GLY 28 ILE 29 TYR 30 HIS 31 TRP 32 LEU 33 ALA 34 TRP 35 TYR 36 GLN 37 GLN 38 LYS 39 PRO 40 GLY 41 LYS 42 ALA 43 PRO 44 LYS 45 LEU 46 LEU 47 ILE 48 TYR 49 LYS 50 ALA 51 SER 52 SER 53 LEU 54 ALA 55 SER 56 GLY 57 ALA 58 PRO 59 SER 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 GLY 66 SER 67 GLY 68 THR 69 ASP 70 PHE 71 THR 72 LEU 73 THR 74 ILE 75 SER 76 SER 77 LEU 78 GLN 79 PRO 80 ASP 81 ASP 82 PHE 83 ALA 84 THR 85 TYR 86 TYR 87 CYS 88 GLN 89 GLN 90 TYR 91 SER 92 ASN 93 TYR 94 PRO 95 LEU 96 THR 97 PHE 98 GLY 99 GLY 100 GLY 101 THR 102 LYS 103 LEU 104 GLU 105 ILE 106 LYS 106A ARG 107 THR 108 VAL 109 ALA 110 ALA 111 PRO 112 SER 113 VAL 114 PHE 115 ILE 116 PHE 117 PRO 118 PRO 119 SER 120 ASP 121 GLU 122 GLN 123 LEU 124 LYS 125 SER 126 GLY 127 THR 128 ALA 129 SER 130 VAL 131 VAL 132 CYS 133 LEU 134 LEU 135 ASN 136 ASN 137 PHE 138 TYR 139 PRO 140 ARG 141 GLU 142 ALA 143 LYS 144 VAL 145 GLN 146 TRP 147 LYS 148 VAL 149 ASP 150 ASN 151 ALA 152 LEU 153 GLN 154 SER 155 GLY 156 ASN 157 SER 158 GLN 159 GLU 160 SER 161 VAL 162 THR 163 GLU 164 GLN 165 ASP 166 SER 167 LYS 168 ASP 169 SER 170 THR 171 TYR 172 SER 173 LEU 174 SER 175 SER 176 THR 177 LEU 178 THR 179 LEU 180 SER 181 LYS 182 ALA 183 ASP 184 TYR 185 GLU 186 LYS 187 HIS 188 LYS 189 VAL 190 TYR 191 ALA 192 CYS 193 GLU 194 VAL 195 THR 196 HIS 197 GLN 198 GLY 199 LEU 200 SER 201 SER 202 PRO 203 VAL 204 THR 205 LYS 206 SER 207

Ligands

Unit 4

GOL 301