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Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   STRUCTURE OF A CBM6 IN COMPLEX WITH NEOAGAROHEXAOSE

Authors :   J. Henshaw, A. Horne, A. L. Van Bueren, V. A. Money, D. N. Bolam, M. Czjze R. M. Weiner, S. W. Hutcheson, G. J. Davies, A. B. Boraston, H. J. Gilber

Date :   26 Jan 06 (Deposition) - 08 Feb 06 (Release) - 28 Jun 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.59

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Carbohydrate-Binding Module, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Henshaw, A. Horne, A. L. Van Bueren, V. A. Money, D. N. Bolam, M. Czjzek, N. A. Ekborg, R. M. Weiner, S. W. Hutcheson, G. J. Davies, A. B. Boraston, H. J. Gilbert
Family 6 Carbohydrate Binding Modules In Beta-Agarases Display Exquisite Selectivity For The Non- Reducing Termini Of Agarose Chains.
J. Biol. Chem. V. 281 17099 2006
PubMed-ID: 16601125 | Reference-DOI: 10.1074/JBC.M600702200

Molecule 1 - BETA-AGARASE 1
	Atcc	:	43691
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Fragment	:	CARBOHYDRATE-BINDING MODULE, RESIDUES 456-593
	Organism Scientific	:	SACCHAROPHAGUS DEGRADANS
	Organism Taxid	:	203122
	Other Details	:	FROM THE LABORATORY OF RON WEINER
	Strain	:	2-40

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 47)

No.	Name	Count	Type	Full Name
1	AAL	12	Ligand/Ion	3,6-ANHYDRO-L-GALACTOSE
2	CA	8	Ligand/Ion	CALCIUM ION
3	CL	9	Ligand/Ion	CHLORIDE ION
4	EDO	6	Ligand/Ion	1,2-ETHANEDIOL
5	GAL	12	Ligand/Ion	BETA-D-GALACTOSE

Biological Unit 1 (3, 7)

No.	Name	Count	Type	Full Name
1	AAL	3	Ligand/Ion	3,6-ANHYDRO-L-GALACTOSE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
5	GAL	3	Ligand/Ion	BETA-D-GALACTOSE

Biological Unit 2 (3, 7)

No.	Name	Count	Type	Full Name
1	AAL	3	Ligand/Ion	3,6-ANHYDRO-L-GALACTOSE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
5	GAL	3	Ligand/Ion	BETA-D-GALACTOSE

Biological Unit 3 (3, 7)

No.	Name	Count	Type	Full Name
1	AAL	3	Ligand/Ion	3,6-ANHYDRO-L-GALACTOSE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
5	GAL	3	Ligand/Ion	BETA-D-GALACTOSE

Biological Unit 4 (3, 9)

No.	Name	Count	Type	Full Name
1	AAL	3	Ligand/Ion	3,6-ANHYDRO-L-GALACTOSE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	EDO	3	Ligand/Ion	1,2-ETHANEDIOL
5	GAL	3	Ligand/Ion	BETA-D-GALACTOSE

Asymmetric Unit (47, 47)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	AAL A:1002 , HOH A:2142 , HOH C:2055	BINDING SITE FOR RESIDUE GAL A1001
02	AC2	SOFTWARE	GAL A:1001 , GAL A:1003 , HOH A:2142 , GLU C:75 , SER C:86 , VAL C:89	BINDING SITE FOR RESIDUE AAL A1002
03	AC3	SOFTWARE	AAL A:1002 , AAL A:1004 , HOH A:2143 , HOH A:2144 , HOH A:2145 , HOH A:2147 , GLU C:75 , LEU C:77 , SER C:86	BINDING SITE FOR RESIDUE GAL A1003
04	AC4	SOFTWARE	GAL A:1003 , GAL A:1005 , HOH A:2146 , HOH A:2147 , HOH A:2150 , ARG C:118 , HIS C:120	BINDING SITE FOR RESIDUE AAL A1004
05	AC5	SOFTWARE	VAL A:69 , TRP A:97 , AAL A:1004 , AAL A:1006 , HOH A:2149 , HOH A:2150 , HOH A:2151 , HOH A:2152 , TYR C:46 , ARG C:118	BINDING SITE FOR RESIDUE GAL A1005
06	AC6	SOFTWARE	ASN A:39 , TYR A:40 , TRP A:97 , TRP A:127 , ASN A:130 , GAL A:1005 , HOH A:2151 , HOH A:2153 , HOH A:2154 , TYR C:46	BINDING SITE FOR RESIDUE AAL A1006
07	AC7	SOFTWARE	AAL B:1002 , HOH B:2128 , GLN D:64 , PHE D:100 , GLN D:101	BINDING SITE FOR RESIDUE GAL B1001
08	AC8	SOFTWARE	GAL B:1001 , GAL B:1003 , HOH B:2129 , GLU D:75 , SER D:86 , VAL D:89 , PRO D:102	BINDING SITE FOR RESIDUE AAL B1002
09	AC9	SOFTWARE	AAL B:1002 , AAL B:1004 , HOH B:2129 , HOH B:2130 , HOH B:2134 , GLU D:75 , SER D:86	BINDING SITE FOR RESIDUE GAL B1003
10	BC1	SOFTWARE	GAL B:1003 , GAL B:1005 , HOH B:2131 , HOH B:2133 , HOH B:2134 , ARG D:118 , HIS D:120	BINDING SITE FOR RESIDUE AAL B1004
11	BC2	SOFTWARE	VAL B:69 , TRP B:97 , AAL B:1004 , AAL B:1006 , HOH B:2115 , HOH B:2131 , HOH B:2135 , HOH B:2136 , HOH B:2137 , TYR D:46 , ARG D:118 , HOH D:2042	BINDING SITE FOR RESIDUE GAL B1005
12	BC3	SOFTWARE	ASN B:39 , TYR B:40 , TRP B:97 , TRP B:127 , ASN B:130 , GAL B:1005 , HOH B:2027 , HOH B:2137 , HOH B:2138 , TYR D:46	BINDING SITE FOR RESIDUE AAL B1006
13	BC4	SOFTWARE	ASN A:35 , GLN A:64 , VAL A:89 , LYS A:133 , EDO A:1141 , CL A:1142 , AAL C:1002 , HOH C:2122	BINDING SITE FOR RESIDUE GAL C1001
14	BC5	SOFTWARE	SER A:86 , GAL C:1001 , GAL C:1003 , HOH C:2122 , HOH C:2123 , HOH C:2124 , HOH C:2125 , HOH C:2126	BINDING SITE FOR RESIDUE AAL C1002
15	BC6	SOFTWARE	GLU A:75 , SER A:86 , AAL C:1002 , AAL C:1004 , HOH C:2126 , HOH C:2127 , HOH C:2128	BINDING SITE FOR RESIDUE GAL C1003
16	BC7	SOFTWARE	ARG A:118 , HIS A:120 , GAL C:1003 , GAL C:1005 , HOH C:2128 , HOH C:2129 , HOH C:2131	BINDING SITE FOR RESIDUE AAL C1004
17	BC8	SOFTWARE	TYR A:46 , TRP A:84 , ARG A:118 , HOH A:2048 , HOH A:2086 , VAL C:69 , TRP C:97 , TRP C:127 , AAL C:1004 , AAL C:1006 , HOH C:2131 , HOH C:2132 , HOH C:2133	BINDING SITE FOR RESIDUE GAL C1005
18	BC9	SOFTWARE	TYR A:46 , ASN C:39 , TYR C:40 , TRP C:97 , TRP C:127 , ASN C:130 , GAL C:1005 , HOH C:2024 , HOH C:2133 , HOH C:2134	BINDING SITE FOR RESIDUE AAL C1006
19	CC1	SOFTWARE	VAL B:89 , HOH B:2073 , AAL D:1002 , HOH D:2125 , HOH D:2126	BINDING SITE FOR RESIDUE GAL D1001
20	CC2	SOFTWARE	GLU B:75 , SER B:86 , GAL D:1001 , GAL D:1003 , HOH D:2127 , HOH D:2128 , HOH D:2130	BINDING SITE FOR RESIDUE AAL D1002
21	CC3	SOFTWARE	GLU B:75 , LEU B:77 , SER B:86 , AAL D:1002 , AAL D:1004 , HOH D:2129 , HOH D:2130 , HOH D:2131 , HOH D:2132	BINDING SITE FOR RESIDUE GAL D1003
22	CC4	SOFTWARE	ARG B:118 , HIS B:120 , GAL D:1003 , GAL D:1005 , HOH D:2131 , HOH D:2134	BINDING SITE FOR RESIDUE AAL D1004
23	CC5	SOFTWARE	GLY B:17 , TYR B:46 , ARG B:118 , HOH B:2031 , VAL D:69 , TRP D:97 , TRP D:127 , AAL D:1004 , AAL D:1006 , HOH D:2135	BINDING SITE FOR RESIDUE GAL D1005
24	CC6	SOFTWARE	GLY B:16 , GLY B:17 , TYR B:46 , ASN D:39 , TYR D:40 , TRP D:97 , TRP D:127 , ASN D:130 , GAL D:1005 , HOH D:2092 , HOH D:2136	BINDING SITE FOR RESIDUE AAL D1006
25	CC7	SOFTWARE	GLU A:8 , GLU A:10 , THR A:36 , ASP A:132 , HOH A:2040	BINDING SITE FOR RESIDUE CA A1139
26	CC8	SOFTWARE	ASP A:21 , PRO A:26 , TYR A:40 , ASN A:42 , ASP A:45 , HOH A:2020	BINDING SITE FOR RESIDUE CA A1140
27	CC9	SOFTWARE	ASN A:35 , THR A:88 , VAL A:89 , EDO A:1141 , HOH A:2033 , GAL C:1001	BINDING SITE FOR RESIDUE CL A1142
28	DC1	SOFTWARE	GLU A:8 , ASN A:11 , ASN B:104 , HOH B:2024	BINDING SITE FOR RESIDUE CL A1143
29	DC2	SOFTWARE	TYR A:109 , HOH A:2059 , HOH A:2113 , HOH A:2117	BINDING SITE FOR RESIDUE CL A1144
30	DC3	SOFTWARE	GLU B:8 , GLU B:10 , THR B:36 , ASP B:132 , HOH B:2023	BINDING SITE FOR RESIDUE CA B1139
31	DC4	SOFTWARE	TYR B:40 , ASN B:42 , ASP B:45 , HOH B:2011 , HOH B:2032	BINDING SITE FOR RESIDUE CA B1140
32	DC5	SOFTWARE	SER B:67 , VAL B:69 , GLY B:72 , VAL B:92 , EDO B:1141	BINDING SITE FOR RESIDUE CL B1142
33	DC6	SOFTWARE	HOH A:2100 , ASN B:58 , ASN B:138	BINDING SITE FOR RESIDUE CL B1143
34	DC7	SOFTWARE	TYR B:109 , HOH B:2101	BINDING SITE FOR RESIDUE CL B1144
35	DC8	SOFTWARE	GLU C:8 , GLU C:10 , THR C:36 , ASP C:132	BINDING SITE FOR RESIDUE CA C1139
36	DC9	SOFTWARE	TYR C:40 , ASN C:42 , ASP C:45 , HOH C:2028	BINDING SITE FOR RESIDUE CA C1140
37	EC1	SOFTWARE	THR C:70 , SER C:124 , ASN C:125 , HOH C:2116	BINDING SITE FOR RESIDUE CL C1142
38	EC2	SOFTWARE	GLN A:55 , VAL C:7 , GLU C:8 , ASN C:11	BINDING SITE FOR RESIDUE CL C1143
39	EC3	SOFTWARE	GLU D:8 , GLU D:10 , THR D:36 , ASP D:132 , HOH D:2033	BINDING SITE FOR RESIDUE CA D1139
40	EC4	SOFTWARE	PRO D:26 , TYR D:40 , ASN D:42 , ASP D:45 , HOH D:2019 , HOH D:2022	BINDING SITE FOR RESIDUE CA D1140
41	EC5	SOFTWARE	ASN C:104 , GLU D:8 , ASN D:11	BINDING SITE FOR RESIDUE CL D1141
42	EC6	SOFTWARE	ASN A:33 , VAL A:89 , THR A:90 , GLY A:105 , CL A:1142 , HOH A:2155 , HOH A:2156 , GAL C:1001	BINDING SITE FOR RESIDUE EDO A1141
43	EC7	SOFTWARE	VAL A:53 , ALA A:54 , HOH A:2122 , VAL B:69 , THR B:70 , GLY B:71 , VAL B:92 , CL B:1142 , HOH B:2139 , HOH B:2140	BINDING SITE FOR RESIDUE EDO B1141
44	EC8	SOFTWARE	ALA A:56 , TYR A:109 , ASN C:11 , TYR C:49 , THR C:50 , HOH C:2136	BINDING SITE FOR RESIDUE EDO C1141
45	EC9	SOFTWARE	ASN B:11 , ASN B:13 , TYR B:49 , THR B:50 , ASN D:58 , EDO D:1144 , HOH D:2058 , HOH D:2137	BINDING SITE FOR RESIDUE EDO D1142
46	FC1	SOFTWARE	ALA D:65 , GLY D:66 , SER D:67 , VAL D:92 , PRO D:93 , GLN D:95 , GLY D:96 , ASN D:99 , HOH D:2138	BINDING SITE FOR RESIDUE EDO D1143
47	FC2	SOFTWARE	ILE B:5 , ALA B:6 , THR B:50 , GLN D:55 , ALA D:56 , TYR D:109 , EDO D:1142 , HOH D:2139 , HOH D:2140	BINDING SITE FOR RESIDUE EDO D1144

(no "SS Bond" information available for 2CDP)

(no "Cis Peptide Bond" information available for 2CDP)

(no "SAP(SNP)/Variant" information available for 2CDP)

(no "PROSITE Motif" information available for 2CDP)

(no "Exon" information available for 2CDP)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:138
 aligned with Q6DN99_9GAMM | Q6DN99 from UniProtKB/TrEMBL  Length:593

    Alignment length:138
                                   465       475       485       495       505       515       525       535       545       555       565       575       585        
         Q6DN99_9GAMM   456 STASIAVEAENFNAVGGTFSDGQAQPVSVYTVNGNTAINYVNQGDYADYTIAVAQAGNYTISYQAGSGVTGGSIEFLVNENGSWASKTVTAVPNQGWDNFQPLNGGSVYLSAGTHQVRLHGAGSNNWQWNLDKFTLSN 593
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeee.hhh.eee...........eeeee..eeeee......eeeeeeee...eeeeeeeeee......eeeeeee....eeeeeeee.........eeeeeeeeee..eeeeeeeee........eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2cdp A   1 STASIAVEAENFNAVGGTFSDGQAQPVSVYTVNGNTAINYVNQGDYADYTIAVAQAGNYTISYQAGSGVTGGSIEFLVNENGSWASKTVTAVPNQGWDNFQPLNGGSVYLSAGTHQVRLHGAGSNNWQWNLDKFTLSN 138
                                    10        20        30        40        50        60        70        80        90       100       110       120       130

Chain B from PDB  Type:PROTEIN  Length:128
 aligned with Q6DN99_9GAMM | Q6DN99 from UniProtKB/TrEMBL  Length:593

    Alignment length:136
                                   467       477       487       497       507       517       527       537       547       557       567       577       587      
         Q6DN99_9GAMM   458 ASIAVEAENFNAVGGTFSDGQAQPVSVYTVNGNTAINYVNQGDYADYTIAVAQAGNYTISYQAGSGVTGGSIEFLVNENGSWASKTVTAVPNQGWDNFQPLNGGSVYLSAGTHQVRLHGAGSNNWQWNLDKFTLSN 593
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.hhh.eee.--------..eeeee..eeeee......eeeeeeee...eeeeeeeeeee.....eeeeeeee..eeeeeeeee....eeeeeeeeeeeeeee..eeeeeeeee........eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cdp B   3 ASIAVEAENFNAVGG--------PVSVYTVNGNTAINYVNQGDYADYTIAVAQAGNYTISYQAGSGVTGGSIEFLVNENGSWASKTVTAVPNQGWDNFQPLNGGSVYLSAGTHQVRLHGAGSNNWQWNLDKFTLSN 138
                                    12    |    -   |    32        42        52        62        72        82        92       102       112       122       132      
                                         17       26

Chain C from PDB  Type:PROTEIN  Length:127
 aligned with Q6DN99_9GAMM | Q6DN99 from UniProtKB/TrEMBL  Length:593

    Alignment length:135
                                   468       478       488       498       508       518       528       538       548       558       568       578       588     
         Q6DN99_9GAMM   459 SIAVEAENFNAVGGTFSDGQAQPVSVYTVNGNTAINYVNQGDYADYTIAVAQAGNYTISYQAGSGVTGGSIEFLVNENGSWASKTVTAVPNQGWDNFQPLNGGSVYLSAGTHQVRLHGAGSNNWQWNLDKFTLSN 593
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.....eee.--------..eeeee..eeeee......eeeeeeee...eeeeeeeeee......eeeeeeee..eeeeeeeee.........eeeeeeeeee..eeeeeeeee........eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cdp C   4 SIAVEAENFNAVGG--------PVSVYTVNGNTAINYVNQGDYADYTIAVAQAGNYTISYQAGSGVTGGSIEFLVNENGSWASKTVTAVPNQGWDNFQPLNGGSVYLSAGTHQVRLHGAGSNNWQWNLDKFTLSN 138
                                    13   |     -  |     33        43        53        63        73        83        93       103       113       123       133     
                                        17       26

Chain D from PDB  Type:PROTEIN  Length:130
 aligned with Q6DN99_9GAMM | Q6DN99 from UniProtKB/TrEMBL  Length:593

    Alignment length:136
                                   467       477       487       497       507       517       527       537       547       557       567       577       587      
         Q6DN99_9GAMM   458 ASIAVEAENFNAVGGTFSDGQAQPVSVYTVNGNTAINYVNQGDYADYTIAVAQAGNYTISYQAGSGVTGGSIEFLVNENGSWASKTVTAVPNQGWDNFQPLNGGSVYLSAGTHQVRLHGAGSNNWQWNLDKFTLSN 593
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.hhh.eee...------..eeeee..eeeee......eeeeeeee...eeeeeeeeeee.....eeeeeeee..eeeeeeeee....eeeeeeeeeeeeeee..eeeeeeeee........eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cdp D   3 ASIAVEAENFNAVGGTF------PVSVYTVNGNTAINYVNQGDYADYTIAVAQAGNYTISYQAGSGVTGGSIEFLVNENGSWASKTVTAVPNQGWDNFQPLNGGSVYLSAGTHQVRLHGAGSNNWQWNLDKFTLSN 138
                                    12      |  -   |    32        42        52        62        72        82        92       102       112       122       132      
                                           19     26

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2CDP)

(no "CATH Domain" information available for 2CDP)

(no "Pfam Domain" information available for 2CDP)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (Q6DN99_9GAMM | Q6DN99)

molecular function
	GO:0030246	carbohydrate binding	Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	Catalysis of the hydrolysis of any O-glycosyl bond.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.

Asymmetric Unit
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	Cis Peptide Bonds
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	Q6DN99_9GAMM \| Q6DN99	:	2cdo

2cdo	STRUCTURE OF AGARASE CARBOHYDRATE BINDING MODULE IN COMPLEX WITH NEOAGAROHEXAOSE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 47)

Sites (47, 47)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

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Pfam Domains (0, 0)

Gene Ontology (4, 4)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File