2CDO - JenaLib

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Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   STRUCTURE OF AGARASE CARBOHYDRATE BINDING MODULE IN COMPLEX WITH NEOAGAROHEXAOSE

Authors :   J. Henshaw, A. Horne, A. L. Van Bueren, V. A. Money, D. N. Bolam, M. Czjzek, R. M. Weiner, S. W. Hutcheson, G. J. Davies, A. B. Boraston, H. J. Gilbert

Date :   25 Jan 06 (Deposition) - 16 Feb 06 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.64

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Carbohydrate-Binding Module, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Henshaw, A. Horne, A. L. Van Bueren, V. A. Money, D. N. Bolam, M. Czjzek, N. A. Ekborg, R. M. Weiner, S. W. Hutcheson, G. J. Davies, A. B. Boraston, H. J. Gilbert
Family 6 Carbohydrate Binding Modules In Beta- Agarases Display Exquisite Selectivity For The Non- Reducing Termini Of Agarose Chains.
J. Biol. Chem. V. 281 17099 2006
PubMed-ID: 16601125 | Reference-DOI: 10.1074/JBC.M600702200

Molecule 1 - BETA-AGARASE 1
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Fragment	:	CARBOHYDRATE-BINDING MODULE, RESIDUES 456-593
	Mutation	:	YES
	Organism Scientific	:	SACCHAROPHAGUS DEGRADANS
	Organism Taxid	:	86304

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (6, 57)

No.	Name	Count	Type	Full Name
1	AAL	12	Ligand/Ion	3,6-ANHYDRO-L-GALACTOSE
2	CA	8	Ligand/Ion	CALCIUM ION
3	CL	10	Ligand/Ion	CHLORIDE ION
4	EDO	7	Ligand/Ion	1,2-ETHANEDIOL
5	GAL	12	Ligand/Ion	BETA-D-GALACTOSE
6	MSE	8	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (3, 8)

No.	Name	Count	Type	Full Name
1	AAL	3	Ligand/Ion	3,6-ANHYDRO-L-GALACTOSE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	EDO	-1	Ligand/Ion	1,2-ETHANEDIOL
5	GAL	3	Ligand/Ion	BETA-D-GALACTOSE
6	MSE	2	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (4, 11)

No.	Name	Count	Type	Full Name
1	AAL	3	Ligand/Ion	3,6-ANHYDRO-L-GALACTOSE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	EDO	3	Ligand/Ion	1,2-ETHANEDIOL
5	GAL	3	Ligand/Ion	BETA-D-GALACTOSE
6	MSE	2	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 3 (4, 11)

No.	Name	Count	Type	Full Name
1	AAL	3	Ligand/Ion	3,6-ANHYDRO-L-GALACTOSE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	EDO	3	Ligand/Ion	1,2-ETHANEDIOL
5	GAL	3	Ligand/Ion	BETA-D-GALACTOSE
6	MSE	2	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 4 (4, 9)

No.	Name	Count	Type	Full Name
1	AAL	3	Ligand/Ion	3,6-ANHYDRO-L-GALACTOSE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
5	GAL	3	Ligand/Ion	BETA-D-GALACTOSE
6	MSE	2	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (49, 49)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	AAL A:1002 , THR D:2	BINDING SITE FOR RESIDUE GAL A1001
02	AC2	SOFTWARE	GAL A:1001 , GAL A:1003 , GLU C:75 , SER C:86	BINDING SITE FOR RESIDUE AAL A1002
03	AC3	SOFTWARE	AAL A:1002 , AAL A:1004 , HOH A:2145 , HOH A:2146 , HOH A:2148 , GLU C:75 , MSE C:77	BINDING SITE FOR RESIDUE GAL A1003
04	AC4	SOFTWARE	GAL A:1003 , GAL A:1005 , HOH A:2147 , HOH A:2148 , HOH A:2149 , MSE C:77 , ARG C:118 , HIS C:120	BINDING SITE FOR RESIDUE AAL A1004
05	AC5	SOFTWARE	VAL A:69 , TRP A:97 , TRP A:127 , AAL A:1004 , AAL A:1006 , HOH A:2149 , HOH A:2150 , HOH A:2151 , HOH A:2152 , TYR C:46 , ARG C:118 , HOH C:2037	BINDING SITE FOR RESIDUE GAL A1005
06	AC6	SOFTWARE	ASN A:39 , TYR A:40 , TRP A:97 , TRP A:127 , ASN A:130 , GAL A:1005 , HOH A:2150 , HOH A:2153 , HOH A:2154 , TYR C:46	BINDING SITE FOR RESIDUE AAL A1006
07	AC7	SOFTWARE	VAL B:89 , AAL B:1002 , HOH B:2146	BINDING SITE FOR RESIDUE GAL B1001
08	AC8	SOFTWARE	GLU B:75 , SER B:86 , GAL B:1001 , GAL B:1003 , HOH B:2148	BINDING SITE FOR RESIDUE AAL B1002
09	AC9	SOFTWARE	GLU B:75 , MSE B:77 , AAL B:1002 , AAL B:1004 , HOH B:2077 , HOH B:2149 , HOH B:2150	BINDING SITE FOR RESIDUE GAL B1003
10	BC1	SOFTWARE	MSE B:77 , ARG B:118 , HIS B:120 , GAL B:1003 , GAL B:1005 , HOH B:2149	BINDING SITE FOR RESIDUE AAL B1004
11	BC2	SOFTWARE	TYR B:46 , ARG B:118 , AAL B:1004 , AAL B:1006 , HOH B:2020 , HOH B:2057 , HOH B:2151 , VAL D:69 , TRP D:97 , HOH D:2125	BINDING SITE FOR RESIDUE GAL B1005
12	BC3	SOFTWARE	GLY B:16 , TYR B:46 , GAL B:1005 , HOH B:2020 , HOH B:2152 , HOH B:2153 , ASN D:39 , TYR D:40 , TRP D:97 , TRP D:127 , ASN D:130	BINDING SITE FOR RESIDUE AAL B1006
13	BC4	SOFTWARE	ASN A:35 , GLN A:64 , VAL A:89 , LYS A:133 , CL A:1142 , HOH A:2008 , HOH A:2089 , AAL C:1002 , HOH C:2125	BINDING SITE FOR RESIDUE GAL C1001
14	BC5	SOFTWARE	SER A:86 , VAL A:89 , HOH A:2106 , GAL C:1001 , GAL C:1003 , HOH C:2125	BINDING SITE FOR RESIDUE AAL C1002
15	BC6	SOFTWARE	GLU A:75 , MSE A:77 , SER A:86 , AAL C:1002 , AAL C:1004 , HOH C:2126 , HOH C:2127 , HOH C:2129	BINDING SITE FOR RESIDUE GAL C1003
16	BC7	SOFTWARE	MSE A:77 , ARG A:118 , HIS A:120 , GAL C:1003 , GAL C:1005 , HOH C:2128 , HOH C:2129	BINDING SITE FOR RESIDUE AAL C1004
17	BC8	SOFTWARE	TYR A:46 , ARG A:118 , HOH A:2052 , VAL C:69 , TRP C:97 , TRP C:127 , AAL C:1004 , AAL C:1006 , HOH C:2033 , HOH C:2128 , HOH C:2130 , HOH C:2131	BINDING SITE FOR RESIDUE GAL C1005
18	BC9	SOFTWARE	TYR A:46 , ASN C:39 , TYR C:40 , TRP C:97 , TRP C:127 , ASN C:130 , GAL C:1005 , HOH C:2083 , HOH C:2132	BINDING SITE FOR RESIDUE AAL C1006
19	CC1	SOFTWARE	ASN D:35 , GLN D:64 , PHE D:100 , AAL D:1002 , HOH D:2075 , HOH D:2136 , HOH D:2137 , HOH D:2138	BINDING SITE FOR RESIDUE GAL D1001
20	CC2	SOFTWARE	GLU D:75 , SER D:86 , VAL D:89 , GLN D:101 , PRO D:102 , GAL D:1001 , GAL D:1003 , HOH D:2139	BINDING SITE FOR RESIDUE AAL D1002
21	CC3	SOFTWARE	GLU D:75 , MSE D:77 , AAL D:1002 , AAL D:1004 , HOH D:2140 , HOH D:2141 , HOH D:2142	BINDING SITE FOR RESIDUE GAL D1003
22	CC4	SOFTWARE	MSE D:77 , ARG D:118 , HIS D:120 , GAL D:1003 , GAL D:1005 , HOH D:2141 , HOH D:2143	BINDING SITE FOR RESIDUE AAL D1004
23	CC5	SOFTWARE	TRP B:97 , TYR D:46 , ARG D:118 , AAL D:1004 , AAL D:1006 , HOH D:2049 , HOH D:2143 , HOH D:2144 , HOH D:2145	BINDING SITE FOR RESIDUE GAL D1005
24	CC6	SOFTWARE	ASN B:39 , TYR B:40 , TRP B:97 , TRP B:127 , ASN B:130 , HOH B:2106 , TYR D:46 , GAL D:1005 , HOH D:2146	BINDING SITE FOR RESIDUE AAL D1006
25	CC7	SOFTWARE	GLU A:8 , GLU A:10 , THR A:36 , ASP A:132 , HOH A:2044	BINDING SITE FOR RESIDUE CA A1139
26	CC8	SOFTWARE	ASP A:21 , PRO A:26 , TYR A:40 , ASN A:42 , ASP A:45 , HOH A:2021	BINDING SITE FOR RESIDUE CA A1140
27	CC9	SOFTWARE	GLU A:8 , ASN A:11 , ASN B:104	BINDING SITE FOR RESIDUE CL A1141
28	DC1	SOFTWARE	ASN A:35 , THR A:88 , VAL A:89 , HOH A:2045 , HOH A:2089 , GAL C:1001	BINDING SITE FOR RESIDUE CL A1142
29	DC2	SOFTWARE	TYR A:109 , HOH A:2064 , HOH A:2119	BINDING SITE FOR RESIDUE CL A1143
30	DC3	SOFTWARE	GLU B:8 , GLU B:10 , THR B:36 , ASP B:132 , HOH B:2046	BINDING SITE FOR RESIDUE CA B1139
31	DC4	SOFTWARE	ASP B:21 , PRO B:26 , TYR B:40 , ASN B:42 , ASP B:45 , HOH B:2021	BINDING SITE FOR RESIDUE CA B1140
32	DC5	SOFTWARE	GLU B:8 , ASN B:11 , HOH B:2003	BINDING SITE FOR RESIDUE CL B1143
33	DC6	SOFTWARE	TYR B:109 , HOH B:2118 , HOH B:2120	BINDING SITE FOR RESIDUE CL B1144
34	DC7	SOFTWARE	GLU C:8 , GLU C:10 , THR C:36 , ASP C:132 , HOH C:2117	BINDING SITE FOR RESIDUE CA C1139
35	DC8	SOFTWARE	ASP C:21 , PRO C:26 , TYR C:40 , ASN C:42 , ASP C:45 , HOH C:2015	BINDING SITE FOR RESIDUE CA C1140
36	DC9	SOFTWARE	GLN A:55 , VAL C:7 , GLU C:8 , ASN C:11 , HOH C:2003	BINDING SITE FOR RESIDUE CL C1142
37	EC1	SOFTWARE	ALA C:56 , SER C:111 , ALA C:112 , HOH C:2018	BINDING SITE FOR RESIDUE CL C1143
38	EC2	SOFTWARE	ASN C:58 , HOH D:2034	BINDING SITE FOR RESIDUE CL C1144
39	EC3	SOFTWARE	GLU D:8 , GLU D:10 , THR D:36 , ASP D:132 , HOH D:2039	BINDING SITE FOR RESIDUE CA D1139
40	EC4	SOFTWARE	ASP D:21 , PRO D:26 , TYR D:40 , ASN D:42 , ASP D:45 , HOH D:2016	BINDING SITE FOR RESIDUE CA D1140
41	EC5	SOFTWARE	TYR D:109 , HOH D:2109	BINDING SITE FOR RESIDUE CL D1141
42	EC6	SOFTWARE	ASN C:104 , GLU D:8 , ASN D:11	BINDING SITE FOR RESIDUE CL D1142
43	EC7	SOFTWARE	VAL A:53 , ALA A:54 , VAL B:69 , THR B:70 , GLY B:71 , VAL B:92 , HOH B:2096 , HOH B:2154 , HOH B:2155 , HOH B:2156	BINDING SITE FOR RESIDUE EDO B1141
44	EC8	SOFTWARE	THR A:70 , PRO A:93 , ASN A:94 , HOH A:2094 , GLY B:57 , ASN B:58 , TYR B:109 , HOH B:2157	BINDING SITE FOR RESIDUE EDO B1142
45	EC9	SOFTWARE	GLY B:96 , TRP B:97 , ASP B:98 , HOH B:2158 , HOH D:2051	BINDING SITE FOR RESIDUE EDO B1145
46	FC1	SOFTWARE	ALA A:56 , TYR A:109 , ASN C:11 , ASN C:13 , TYR C:49 , THR C:50 , HOH C:2134	BINDING SITE FOR RESIDUE EDO C1141
47	FC2	SOFTWARE	VAL C:69 , THR C:70 , GLY C:71 , VAL C:92 , HOH C:2135 , HOH C:2136 , HOH C:2137 , VAL D:53 , HOH D:2117	BINDING SITE FOR RESIDUE EDO C1145
48	FC3	SOFTWARE	ASN B:81 , LYS C:87 , VAL C:108 , TYR C:109 , HOH C:2138 , HOH C:2139	BINDING SITE FOR RESIDUE EDO C1146
49	FC4	SOFTWARE	ALA B:52 , VAL B:53 , ALA B:54 , HOH B:2125 , HOH D:2147	BINDING SITE FOR RESIDUE EDO D1143

(no "SS Bond" information available for 2CDO)

(no "Cis Peptide Bond" information available for 2CDO)

(no "SAP(SNP)/Variant" information available for 2CDO)

(no "PROSITE Motif" information available for 2CDO)

(no "Exon" information available for 2CDO)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:138
 aligned with Q6DN99_9GAMM | Q6DN99 from UniProtKB/TrEMBL  Length:593

    Alignment length:138
                                   465       475       485       495       505       515       525       535       545       555       565       575       585        
         Q6DN99_9GAMM   456 STASIAVEAENFNAVGGTFSDGQAQPVSVYTVNGNTAINYVNQGDYADYTIAVAQAGNYTISYQAGSGVTGGSIEFLVNENGSWASKTVTAVPNQGWDNFQPLNGGSVYLSAGTHQVRLHGAGSNNWQWNLDKFTLSN 593
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeee.hhh.eee...........eeeee..eeeee......eeeeeeee...eeeeeeeeee......eeeeeee....eeeeeeee.........eeeeeeeeee..eeeeeeeee........eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2cdo A   1 STASmAVEAENFNAVGGTFSDGQAQPVSVYTVNGNTAINYVNQGDYADYTIAVAQAGNYTISYQAGSGVTGGSIEFmVNENGSWASKTVTAVPNQGWDNFQPLNGGSVYLSAGTHQVRLHGAGSNNWQWNLDKFTLSN 138
                                |   10        20        30        40        50        60        70      | 80        90       100       110       120       130        
                                |                                                                      77-MSE                                                         
                                5-MSE

Chain B from PDB  Type:PROTEIN  Length:137
 aligned with Q6DN99_9GAMM | Q6DN99 from UniProtKB/TrEMBL  Length:593

    Alignment length:137
                                   466       476       486       496       506       516       526       536       546       556       566       576       586       
         Q6DN99_9GAMM   457 TASIAVEAENFNAVGGTFSDGQAQPVSVYTVNGNTAINYVNQGDYADYTIAVAQAGNYTISYQAGSGVTGGSIEFLVNENGSWASKTVTAVPNQGWDNFQPLNGGSVYLSAGTHQVRLHGAGSNNWQWNLDKFTLSN 593
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.hhh.eee...........eeeee..eeeee......eeeeeeee...eeeeeeeeee......eeeeeeee..eeeeeeeee.........eeeeeeeeee..eeeeeeeee........eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cdo B   2 TASmAVEAENFNAVGGTFSDGQAQPVSVYTVNGNTAINYVNQGDYADYTIAVAQAGNYTISYQAGSGVTGGSIEFmVNENGSWASKTVTAVPNQGWDNFQPLNGGSVYLSAGTHQVRLHGAGSNNWQWNLDKFTLSN 138
                               |    11        21        31        41        51        61        71     |  81        91       101       111       121       131       
                               5-MSE                                                                  77-MSE

Chain C from PDB  Type:PROTEIN  Length:136
 aligned with Q6DN99_9GAMM | Q6DN99 from UniProtKB/TrEMBL  Length:593

    Alignment length:136
                                   467       477       487       497       507       517       527       537       547       557       567       577       587      
         Q6DN99_9GAMM   458 ASIAVEAENFNAVGGTFSDGQAQPVSVYTVNGNTAINYVNQGDYADYTIAVAQAGNYTISYQAGSGVTGGSIEFLVNENGSWASKTVTAVPNQGWDNFQPLNGGSVYLSAGTHQVRLHGAGSNNWQWNLDKFTLSN 593
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eee...........eeeee..eeeee......eeeeeeee...eeeeeeeeee......eeeeeeee..eeeeeeeee.........eeeeeeeeee..eeeeeeeee........eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cdo C   3 ASmAVEAENFNAVGGTFSDGQAQPVSVYTVNGNTAINYVNQGDYADYTIAVAQAGNYTISYQAGSGVTGGSIEFmVNENGSWASKTVTAVPNQGWDNFQPLNGGSVYLSAGTHQVRLHGAGSNNWQWNLDKFTLSN 138
                              |     12        22        32        42        52        62        72    |   82        92       102       112       122       132      
                              5-MSE                                                                  77-MSE

Chain D from PDB  Type:PROTEIN  Length:137
 aligned with Q6DN99_9GAMM | Q6DN99 from UniProtKB/TrEMBL  Length:593

    Alignment length:137
                                   466       476       486       496       506       516       526       536       546       556       566       576       586       
         Q6DN99_9GAMM   457 TASIAVEAENFNAVGGTFSDGQAQPVSVYTVNGNTAINYVNQGDYADYTIAVAQAGNYTISYQAGSGVTGGSIEFLVNENGSWASKTVTAVPNQGWDNFQPLNGGSVYLSAGTHQVRLHGAGSNNWQWNLDKFTLSN 593
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.hhh.eee...........eeeee..eeeee......eeeeeeee...eeeeeeeeeee.....eeeeeeee..eeeeeeeee....eeeeeeeeeeeeeee..eeeeeeeee........eeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cdo D   2 TASmAVEAENFNAVGGTFSDGQAQPVSVYTVNGNTAINYVNQGDYADYTIAVAQAGNYTISYQAGSGVTGGSIEFmVNENGSWASKTVTAVPNQGWDNFQPLNGGSVYLSAGTHQVRLHGAGSNNWQWNLDKFTLSN 138
                               |    11        21        31        41        51        61        71     |  81        91       101       111       121       131       
                               5-MSE                                                                  77-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2CDO)

(no "CATH Domain" information available for 2CDO)

(no "Pfam Domain" information available for 2CDO)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (Q6DN99_9GAMM | Q6DN99)

molecular function
	GO:0030246	carbohydrate binding	Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	Catalysis of the hydrolysis of any O-glycosyl bond.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.

Asymmetric Unit
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	Cis Peptide Bonds
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	Q6DN99_9GAMM \| Q6DN99	:	2cdp

2cdp	STRUCTURE OF A CBM6 IN COMPLEX WITH NEOAGAROHEXAOSE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 57)

Sites (49, 49)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

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Gene Ontology (4, 4)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File