2CDP - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF A CBM6 IN COMPLEX WITH NEOAGAROHEXAOSE
• Keywords: CARBOHYDRATE-BINDING MODULE, HYDROLASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2CDP	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	BETA-AGARASE 1	A	138	1027	0
2	Protein	BETA-AGARASE 1	B	128	955	0
3	Protein	BETA-AGARASE 1	C	127	950	0
4	Protein	BETA-AGARASE 1	D	130	973	0
5	Ligand		E	6	0	64
6	Ligand		F	6	0	64
7	Ligand		G	6	0	64
8	Ligand		H	6	0	64
9	Ligand	BETA-AGARASE 1	A	6	0	9
10	Ligand	BETA-AGARASE 1	B	6	0	9
11	Ligand	BETA-AGARASE 1	C	5	0	8
12	Ligand	BETA-AGARASE 1	D	6	0	15
13	Water			572	0	572
total				1142	3905	869

Proteins

Unit 1	SER 1 THR 2 ALA 3 SER 4 ILE 5 ALA 6 VAL 7 GLU 8 ALA 9 GLU 10 ASN 11 PHE 12 ASN 13 ALA 14 VAL 15 GLY 16 GLY 17 THR 18 PHE 19 SER 20 ASP 21 GLY 22 GLN 23 ALA 24 GLN 25 PRO 26 VAL 27 SER 28 VAL 29 TYR 30 THR 31 VAL 32 ASN 33 GLY 34 ASN 35 THR 36 ALA 37 ILE 38 ASN 39 TYR 40 VAL 41 ASN 42 GLN 43 GLY 44 ASP 45 TYR 46 ALA 47 ASP 48 TYR 49 THR 50 ILE 51 ALA 52 VAL 53 ALA 54 GLN 55 ALA 56 GLY 57 ASN 58 TYR 59 THR 60 ILE 61 SER 62 TYR 63 GLN 64 ALA 65 GLY 66 SER 67 GLY 68 VAL 69 THR 70 GLY 71 GLY 72 SER 73 ILE 74 GLU 75 PHE 76 LEU 77 VAL 78 ASN 79 GLU 80 ASN 81 GLY 82 SER 83 TRP 84 ALA 85 SER 86 LYS 87 THR 88 VAL 89 THR 90 ALA 91 VAL 92 PRO 93 ASN 94 GLN 95 GLY 96 TRP 97 ASP 98 ASN 99 PHE 100 GLN 101 PRO 102 LEU 103 ASN 104 GLY 105 GLY 106 SER 107 VAL 108 TYR 109 LEU 110 SER 111 ALA 112 GLY 113 THR 114 HIS 115 GLN 116 VAL 117 ARG 118 LEU 119 HIS 120 GLY 121 ALA 122 GLY 123 SER 124 ASN 125 ASN 126 TRP 127 GLN 128 TRP 129 ASN 130 LEU 131 ASP 132 LYS 133 PHE 134 THR 135 LEU 136 SER 137 ASN 138
Unit 2	ALA 3 SER 4 ILE 5 ALA 6 VAL 7 GLU 8 ALA 9 GLU 10 ASN 11 PHE 12 ASN 13 ALA 14 VAL 15 GLY 16 GLY 17 PRO 26 VAL 27 SER 28 VAL 29 TYR 30 THR 31 VAL 32 ASN 33 GLY 34 ASN 35 THR 36 ALA 37 ILE 38 ASN 39 TYR 40 VAL 41 ASN 42 GLN 43 GLY 44 ASP 45 TYR 46 ALA 47 ASP 48 TYR 49 THR 50 ILE 51 ALA 52 VAL 53 ALA 54 GLN 55 ALA 56 GLY 57 ASN 58 TYR 59 THR 60 ILE 61 SER 62 TYR 63 GLN 64 ALA 65 GLY 66 SER 67 GLY 68 VAL 69 THR 70 GLY 71 GLY 72 SER 73 ILE 74 GLU 75 PHE 76 LEU 77 VAL 78 ASN 79 GLU 80 ASN 81 GLY 82 SER 83 TRP 84 ALA 85 SER 86 LYS 87 THR 88 VAL 89 THR 90 ALA 91 VAL 92 PRO 93 ASN 94 GLN 95 GLY 96 TRP 97 ASP 98 ASN 99 PHE 100 GLN 101 PRO 102 LEU 103 ASN 104 GLY 105 GLY 106 SER 107 VAL 108 TYR 109 LEU 110 SER 111 ALA 112 GLY 113 THR 114 HIS 115 GLN 116 VAL 117 ARG 118 LEU 119 HIS 120 GLY 121 ALA 122 GLY 123 SER 124 ASN 125 ASN 126 TRP 127 GLN 128 TRP 129 ASN 130 LEU 131 ASP 132 LYS 133 PHE 134 THR 135 LEU 136 SER 137 ASN 138
Unit 3	SER 4 ILE 5 ALA 6 VAL 7 GLU 8 ALA 9 GLU 10 ASN 11 PHE 12 ASN 13 ALA 14 VAL 15 GLY 16 GLY 17 PRO 26 VAL 27 SER 28 VAL 29 TYR 30 THR 31 VAL 32 ASN 33 GLY 34 ASN 35 THR 36 ALA 37 ILE 38 ASN 39 TYR 40 VAL 41 ASN 42 GLN 43 GLY 44 ASP 45 TYR 46 ALA 47 ASP 48 TYR 49 THR 50 ILE 51 ALA 52 VAL 53 ALA 54 GLN 55 ALA 56 GLY 57 ASN 58 TYR 59 THR 60 ILE 61 SER 62 TYR 63 GLN 64 ALA 65 GLY 66 SER 67 GLY 68 VAL 69 THR 70 GLY 71 GLY 72 SER 73 ILE 74 GLU 75 PHE 76 LEU 77 VAL 78 ASN 79 GLU 80 ASN 81 GLY 82 SER 83 TRP 84 ALA 85 SER 86 LYS 87 THR 88 VAL 89 THR 90 ALA 91 VAL 92 PRO 93 ASN 94 GLN 95 GLY 96 TRP 97 ASP 98 ASN 99 PHE 100 GLN 101 PRO 102 LEU 103 ASN 104 GLY 105 GLY 106 SER 107 VAL 108 TYR 109 LEU 110 SER 111 ALA 112 GLY 113 THR 114 HIS 115 GLN 116 VAL 117 ARG 118 LEU 119 HIS 120 GLY 121 ALA 122 GLY 123 SER 124 ASN 125 ASN 126 TRP 127 GLN 128 TRP 129 ASN 130 LEU 131 ASP 132 LYS 133 PHE 134 THR 135 LEU 136 SER 137 ASN 138
Unit 4	ALA 3 SER 4 ILE 5 ALA 6 VAL 7 GLU 8 ALA 9 GLU 10 ASN 11 PHE 12 ASN 13 ALA 14 VAL 15 GLY 16 GLY 17 THR 18 PHE 19 PRO 26 VAL 27 SER 28 VAL 29 TYR 30 THR 31 VAL 32 ASN 33 GLY 34 ASN 35 THR 36 ALA 37 ILE 38 ASN 39 TYR 40 VAL 41 ASN 42 GLN 43 GLY 44 ASP 45 TYR 46 ALA 47 ASP 48 TYR 49 THR 50 ILE 51 ALA 52 VAL 53 ALA 54 GLN 55 ALA 56 GLY 57 ASN 58 TYR 59 THR 60 ILE 61 SER 62 TYR 63 GLN 64 ALA 65 GLY 66 SER 67 GLY 68 VAL 69 THR 70 GLY 71 GLY 72 SER 73 ILE 74 GLU 75 PHE 76 LEU 77 VAL 78 ASN 79 GLU 80 ASN 81 GLY 82 SER 83 TRP 84 ALA 85 SER 86 LYS 87 THR 88 VAL 89 THR 90 ALA 91 VAL 92 PRO 93 ASN 94 GLN 95 GLY 96 TRP 97 ASP 98 ASN 99 PHE 100 GLN 101 PRO 102 LEU 103 ASN 104 GLY 105 GLY 106 SER 107 VAL 108 TYR 109 LEU 110 SER 111 ALA 112 GLY 113 THR 114 HIS 115 GLN 116 VAL 117 ARG 118 LEU 119 HIS 120 GLY 121 ALA 122 GLY 123 SER 124 ASN 125 ASN 126 TRP 127 GLN 128 TRP 129 ASN 130 LEU 131 ASP 132 LYS 133 PHE 134 THR 135 LEU 136 SER 137 ASN 138

Ligands

Unit 5	GAL 1 AAL 2 GAL 3 AAL 4 GAL 5 AAL 6
Unit 6	GAL 1 AAL 2 GAL 3 AAL 4 GAL 5 AAL 6
Unit 7	GAL 1 AAL 2 GAL 3 AAL 4 GAL 5 AAL 6
Unit 8	GAL 1 AAL 2 GAL 3 AAL 4 GAL 5 AAL 6
Unit 9	CA 1139 CA 1140 EDO 1141 CL 1142 CL 1143 CL 1144
Unit 10	CA 1139 CA 1140 EDO 1141 CL 1142 CL 1143 CL 1144
Unit 11	CA 1139 CA 1140 EDO 1141 CL 1142 CL 1143
Unit 12	CA 1139 CA 1140 CL 1141 EDO 1142 EDO 1143 EDO 1144