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2CDP
Biol. Unit 1
Info
Asym.Unit (111 KB)
Biol.Unit 1 (30 KB)
Biol.Unit 2 (28 KB)
Biol.Unit 3 (28 KB)
Biol.Unit 4 (29 KB)
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(1)
Title
:
STRUCTURE OF A CBM6 IN COMPLEX WITH NEOAGAROHEXAOSE
Authors
:
J. Henshaw, A. Horne, A. L. Van Bueren, V. A. Money, D. N. Bolam, M. Czjze R. M. Weiner, S. W. Hutcheson, G. J. Davies, A. B. Boraston, H. J. Gilber
Date
:
26 Jan 06 (Deposition) - 08 Feb 06 (Release) - 28 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.59
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Carbohydrate-Binding Module, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Henshaw, A. Horne, A. L. Van Bueren, V. A. Money, D. N. Bolam, M. Czjzek, N. A. Ekborg, R. M. Weiner, S. W. Hutcheson, G. J. Davies, A. B. Boraston, H. J. Gilbert
Family 6 Carbohydrate Binding Modules In Beta-Agarases Display Exquisite Selectivity For The Non- Reducing Termini Of Agarose Chains.
J. Biol. Chem. V. 281 17099 2006
[
close entry info
]
Hetero Components
(3, 7)
Info
All Hetero Components
1a: 3,6-ANHYDRO-L-GALACTOSE (AALa)
1b: 3,6-ANHYDRO-L-GALACTOSE (AALb)
1c: 3,6-ANHYDRO-L-GALACTOSE (AALc)
1d: 3,6-ANHYDRO-L-GALACTOSE (AALd)
1e: 3,6-ANHYDRO-L-GALACTOSE (AALe)
1f: 3,6-ANHYDRO-L-GALACTOSE (AALf)
1g: 3,6-ANHYDRO-L-GALACTOSE (AALg)
1h: 3,6-ANHYDRO-L-GALACTOSE (AALh)
1i: 3,6-ANHYDRO-L-GALACTOSE (AALi)
1j: 3,6-ANHYDRO-L-GALACTOSE (AALj)
1k: 3,6-ANHYDRO-L-GALACTOSE (AALk)
1l: 3,6-ANHYDRO-L-GALACTOSE (AALl)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
3e: CHLORIDE ION (CLe)
3f: CHLORIDE ION (CLf)
3g: CHLORIDE ION (CLg)
3h: CHLORIDE ION (CLh)
3i: CHLORIDE ION (CLi)
4a: 1,2-ETHANEDIOL (EDOa)
4b: 1,2-ETHANEDIOL (EDOb)
4c: 1,2-ETHANEDIOL (EDOc)
4d: 1,2-ETHANEDIOL (EDOd)
4e: 1,2-ETHANEDIOL (EDOe)
4f: 1,2-ETHANEDIOL (EDOf)
5a: BETA-D-GALACTOSE (GALa)
5b: BETA-D-GALACTOSE (GALb)
5c: BETA-D-GALACTOSE (GALc)
5d: BETA-D-GALACTOSE (GALd)
5e: BETA-D-GALACTOSE (GALe)
5f: BETA-D-GALACTOSE (GALf)
5g: BETA-D-GALACTOSE (GALg)
5h: BETA-D-GALACTOSE (GALh)
5i: BETA-D-GALACTOSE (GALi)
5j: BETA-D-GALACTOSE (GALj)
5k: BETA-D-GALACTOSE (GALk)
5l: BETA-D-GALACTOSE (GALl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AAL
3
Ligand/Ion
3,6-ANHYDRO-L-GALACTOSE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
5
GAL
3
Ligand/Ion
BETA-D-GALACTOSE
[
close Hetero Component info
]
Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: BC4 (SOFTWARE)
08: BC5 (SOFTWARE)
09: BC6 (SOFTWARE)
10: BC7 (SOFTWARE)
11: BC8 (SOFTWARE)
12: BC9 (SOFTWARE)
13: CC7 (SOFTWARE)
14: CC8 (SOFTWARE)
15: CC9 (SOFTWARE)
16: DC1 (SOFTWARE)
17: DC2 (SOFTWARE)
18: DC6 (SOFTWARE)
19: EC2 (SOFTWARE)
20: EC6 (SOFTWARE)
21: EC7 (SOFTWARE)
22: EC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
AAL A:1002 , HOH A:2142 , HOH C:2055
BINDING SITE FOR RESIDUE GAL A1001
02
AC2
SOFTWARE
GAL A:1001 , GAL A:1003 , HOH A:2142 , GLU C:75 , SER C:86 , VAL C:89
BINDING SITE FOR RESIDUE AAL A1002
03
AC3
SOFTWARE
AAL A:1002 , AAL A:1004 , HOH A:2143 , HOH A:2144 , HOH A:2145 , HOH A:2147 , GLU C:75 , LEU C:77 , SER C:86
BINDING SITE FOR RESIDUE GAL A1003
04
AC4
SOFTWARE
GAL A:1003 , GAL A:1005 , HOH A:2146 , HOH A:2147 , HOH A:2150 , ARG C:118 , HIS C:120
BINDING SITE FOR RESIDUE AAL A1004
05
AC5
SOFTWARE
VAL A:69 , TRP A:97 , AAL A:1004 , AAL A:1006 , HOH A:2149 , HOH A:2150 , HOH A:2151 , HOH A:2152 , TYR C:46 , ARG C:118
BINDING SITE FOR RESIDUE GAL A1005
06
AC6
SOFTWARE
ASN A:39 , TYR A:40 , TRP A:97 , TRP A:127 , ASN A:130 , GAL A:1005 , HOH A:2151 , HOH A:2153 , HOH A:2154 , TYR C:46
BINDING SITE FOR RESIDUE AAL A1006
07
BC4
SOFTWARE
ASN A:35 , GLN A:64 , VAL A:89 , LYS A:133 , EDO A:1141 , CL A:1142 , AAL C:1002 , HOH C:2122
BINDING SITE FOR RESIDUE GAL C1001
08
BC5
SOFTWARE
SER A:86 , GAL C:1001 , GAL C:1003 , HOH C:2122 , HOH C:2123 , HOH C:2124 , HOH C:2125 , HOH C:2126
BINDING SITE FOR RESIDUE AAL C1002
09
BC6
SOFTWARE
GLU A:75 , SER A:86 , AAL C:1002 , AAL C:1004 , HOH C:2126 , HOH C:2127 , HOH C:2128
BINDING SITE FOR RESIDUE GAL C1003
10
BC7
SOFTWARE
ARG A:118 , HIS A:120 , GAL C:1003 , GAL C:1005 , HOH C:2128 , HOH C:2129 , HOH C:2131
BINDING SITE FOR RESIDUE AAL C1004
11
BC8
SOFTWARE
TYR A:46 , TRP A:84 , ARG A:118 , HOH A:2048 , HOH A:2086 , VAL C:69 , TRP C:97 , TRP C:127 , AAL C:1004 , AAL C:1006 , HOH C:2131 , HOH C:2132 , HOH C:2133
BINDING SITE FOR RESIDUE GAL C1005
12
BC9
SOFTWARE
TYR A:46 , ASN C:39 , TYR C:40 , TRP C:97 , TRP C:127 , ASN C:130 , GAL C:1005 , HOH C:2024 , HOH C:2133 , HOH C:2134
BINDING SITE FOR RESIDUE AAL C1006
13
CC7
SOFTWARE
GLU A:8 , GLU A:10 , THR A:36 , ASP A:132 , HOH A:2040
BINDING SITE FOR RESIDUE CA A1139
14
CC8
SOFTWARE
ASP A:21 , PRO A:26 , TYR A:40 , ASN A:42 , ASP A:45 , HOH A:2020
BINDING SITE FOR RESIDUE CA A1140
15
CC9
SOFTWARE
ASN A:35 , THR A:88 , VAL A:89 , EDO A:1141 , HOH A:2033 , GAL C:1001
BINDING SITE FOR RESIDUE CL A1142
16
DC1
SOFTWARE
GLU A:8 , ASN A:11 , ASN B:104 , HOH B:2024
BINDING SITE FOR RESIDUE CL A1143
17
DC2
SOFTWARE
TYR A:109 , HOH A:2059 , HOH A:2113 , HOH A:2117
BINDING SITE FOR RESIDUE CL A1144
18
DC6
SOFTWARE
HOH A:2100 , ASN B:58 , ASN B:138
BINDING SITE FOR RESIDUE CL B1143
19
EC2
SOFTWARE
GLN A:55 , VAL C:7 , GLU C:8 , ASN C:11
BINDING SITE FOR RESIDUE CL C1143
20
EC6
SOFTWARE
ASN A:33 , VAL A:89 , THR A:90 , GLY A:105 , CL A:1142 , HOH A:2155 , HOH A:2156 , GAL C:1001
BINDING SITE FOR RESIDUE EDO A1141
21
EC7
SOFTWARE
VAL A:53 , ALA A:54 , HOH A:2122 , VAL B:69 , THR B:70 , GLY B:71 , VAL B:92 , CL B:1142 , HOH B:2139 , HOH B:2140
BINDING SITE FOR RESIDUE EDO B1141
22
EC8
SOFTWARE
ALA A:56 , TYR A:109 , ASN C:11 , TYR C:49 , THR C:50 , HOH C:2136
BINDING SITE FOR RESIDUE EDO C1141
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
Info
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Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
[
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Chain A
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (111 KB)
Header - Asym.Unit
Biol.Unit 1 (30 KB)
Header - Biol.Unit 1
Biol.Unit 2 (28 KB)
Header - Biol.Unit 2
Biol.Unit 3 (28 KB)
Header - Biol.Unit 3
Biol.Unit 4 (29 KB)
Header - Biol.Unit 4
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