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(-) Description

Title :  SO1698 PROTEIN, AN ASPARTIC PEPTIDASE FROM SHEWANELLA ONEIDENSIS.
 
Authors :  J. Osipiuk, R. Mulligan, F. Collart, A. Joachimiak, Midwest Center F Structural Genomics (Mcsg)
Date :  24 May 10  (Deposition) - 02 Jun 10  (Release) - 31 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.57
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (6x)
Biol. Unit 2:  A,B  (2x)
Biol. Unit 3:  A,B  (2x)
Biol. Unit 4:  A,B  (1x)
Biol. Unit 5:  A  (6x)
Biol. Unit 6:  A  (2x)
Biol. Unit 7:  A  (2x)
Keywords :  Structural Genomics, Aspartic Peptidase, Autocatalysis, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Osipiuk, R. Mulligan, M. Bargassa, J. E. Hamilton, M. A. Cunningham A. Joachimiak
Characterization Of Member Of Duf1888 Protein Family, Self-Cleaving And Self-Assembling Endopeptidase.
J. Biol. Chem. V. 287 19452 2012
PubMed-ID: 22493430  |  Reference-DOI: 10.1074/JBC.M112.358069

(-) Compounds

Molecule 1 - PEPTIDASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: N-TERMINAL DOMAIN 1-116
    Gene: SO_1698
    Organism Scientific: SHEWANELLA ONEIDENSIS
    Organism Taxid: 70863
    Strain: MR-1
 
Molecule 2 - PEPTIDASE
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: C-TERMINAL DOMAIN 117-125
    Gene: SO_1698
    Organism Scientific: SHEWANELLA ONEIDENSIS
    Organism Taxid: 70863
    Strain: MR-1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (6x): AB
Biological Unit 2 (2x): AB
Biological Unit 3 (2x): AB
Biological Unit 4 (1x): AB
Biological Unit 5 (6x): A 
Biological Unit 6 (2x): A 
Biological Unit 7 (2x): A 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 4)

Asymmetric Unit (4, 4)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2BME1Ligand/IonBETA-MERCAPTOETHANOL
3MSE1Mod. Amino AcidSELENOMETHIONINE
4ZN1Ligand/IonZINC ION
Biological Unit 1 (3, 18)
No.NameCountTypeFull Name
1ACT6Ligand/IonACETATE ION
2BME6Ligand/IonBETA-MERCAPTOETHANOL
3MSE6Mod. Amino AcidSELENOMETHIONINE
4ZN-1Ligand/IonZINC ION
Biological Unit 2 (3, 6)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2BME2Ligand/IonBETA-MERCAPTOETHANOL
3MSE2Mod. Amino AcidSELENOMETHIONINE
4ZN-1Ligand/IonZINC ION
Biological Unit 3 (3, 6)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2BME2Ligand/IonBETA-MERCAPTOETHANOL
3MSE2Mod. Amino AcidSELENOMETHIONINE
4ZN-1Ligand/IonZINC ION
Biological Unit 4 (3, 3)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2BME1Ligand/IonBETA-MERCAPTOETHANOL
3MSE1Mod. Amino AcidSELENOMETHIONINE
4ZN-1Ligand/IonZINC ION
Biological Unit 5 (3, 18)
No.NameCountTypeFull Name
1ACT6Ligand/IonACETATE ION
2BME6Ligand/IonBETA-MERCAPTOETHANOL
3MSE6Mod. Amino AcidSELENOMETHIONINE
4ZN-1Ligand/IonZINC ION
Biological Unit 6 (3, 6)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2BME2Ligand/IonBETA-MERCAPTOETHANOL
3MSE2Mod. Amino AcidSELENOMETHIONINE
4ZN-1Ligand/IonZINC ION
Biological Unit 7 (3, 6)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2BME2Ligand/IonBETA-MERCAPTOETHANOL
3MSE2Mod. Amino AcidSELENOMETHIONINE
4ZN-1Ligand/IonZINC ION

(-) Sites  (143, 143)

Asymmetric Unit (143, 143)
No.NameEvidenceResiduesDescription
001AC1SOFTWARECYS A:34 , GLN A:35 , GLY A:36 , ASP A:37 , HOH A:119BINDING SITE FOR RESIDUE BME A 501
002AC2SOFTWAREASP A:116 , HOH A:252 , HOH A:253BINDING SITE FOR RESIDUE ACT A 502
003AC3SOFTWAREGLY A:71 , ASP A:74 , ASP A:91 , THR A:93 , HOH A:244 , HOH A:251BINDING SITE FOR RESIDUE ZN A 503
004AC4SOFTWAREASN A:105 , ASN A:108 , THR A:109 , LEU A:110 , HOH A:149BINDING SITE FOR RESIDUE HOH A 141
005AC5SOFTWAREGLY A:57 , LYS A:59 , SER A:104 , ASN A:105 , HOH A:178BINDING SITE FOR RESIDUE HOH A 142
006AC6SOFTWAREGLY A:62 , VAL A:63 , VAL A:76 , THR A:109 , LEU A:111 , HOH A:160BINDING SITE FOR RESIDUE HOH A 143
007AC7SOFTWAREASP A:74 , ALA A:75 , ASN A:108 , THR A:109 , HOH A:171BINDING SITE FOR RESIDUE HOH A 144
008AC8SOFTWAREALA A:8 , GLN A:9 , THR A:45 , THR A:47BINDING SITE FOR RESIDUE HOH A 145
009AC9SOFTWAREVAL A:76 , SER A:79 , SER A:80 , THR A:109 , HOH A:160BINDING SITE FOR RESIDUE HOH A 146
010BC1SOFTWAREPRO A:68 , ASP A:70 , GLY A:71 , ILE A:73 , LEU A:110 , HOH A:228BINDING SITE FOR RESIDUE HOH A 147
011BC2SOFTWAREPHE A:65 , VAL A:66 , THR A:67 , THR A:97 , LYS A:98 , HOH A:219BINDING SITE FOR RESIDUE HOH A 148
012BC3SOFTWARESER A:80 , THR A:109 , HOH A:141 , HOH A:160 , HOH A:187BINDING SITE FOR RESIDUE HOH A 149
013BC4SOFTWAREASN A:105 , THR A:106 , ASN A:108 , HOH A:156 , HOH A:158 , HOH A:191BINDING SITE FOR RESIDUE HOH A 150
014BC5SOFTWAREASP A:52 , GLY A:57 , LEU A:58 , HOH A:157 , HOH A:221BINDING SITE FOR RESIDUE HOH A 151
015BC6SOFTWARETYR A:26 , PRO A:115 , HOH A:180 , HOH A:207BINDING SITE FOR RESIDUE HOH A 152
016BC7SOFTWAREPHE A:65 , ASP A:70 , ILE A:72 , ILE A:73 , LEU A:110BINDING SITE FOR RESIDUE HOH A 153
017BC8SOFTWAREPHE A:99 , GLN A:100 , SER A:114 , PRO A:115 , PRO B:117BINDING SITE FOR RESIDUE HOH A 154
018BC9SOFTWARELYS A:59 , ASP A:81 , HOH A:189 , HOH A:225BINDING SITE FOR RESIDUE HOH A 155
019CC1SOFTWAREASP A:81 , ALA A:107 , ASN A:108 , HOH A:150 , HOH A:179BINDING SITE FOR RESIDUE HOH A 156
020CC2SOFTWAREMSE A:83 , HOH A:151 , HOH A:167 , HOH A:182 , HOH A:243BINDING SITE FOR RESIDUE HOH A 157
021CC3SOFTWARESER A:80 , ASP A:81 , HOH A:150 , HOH A:188BINDING SITE FOR RESIDUE HOH A 158
022CC4SOFTWAREPRO A:22 , PRO A:115 , HOH A:165 , HOH A:169 , HOH A:239BINDING SITE FOR RESIDUE HOH A 159
023CC5SOFTWARETHR A:109 , HOH A:143 , HOH A:146 , HOH A:149 , HOH A:210BINDING SITE FOR RESIDUE HOH A 160
024CC6SOFTWARELYS A:98 , GLN A:100 , HOH A:170 , HOH A:193BINDING SITE FOR RESIDUE HOH A 161
025CC7SOFTWAREASP A:52 , LEU A:55 , LYS A:56 , GLY A:57 , HOH A:140 , HOH A:168BINDING SITE FOR RESIDUE HOH A 162
026CC8SOFTWAREILE A:25 , TYR A:26 , CYS A:34 , HOH A:136 , HOH A:220BINDING SITE FOR RESIDUE HOH A 163
027CC9SOFTWARELYS A:59 , VAL A:61 , SER A:104 , HOH A:173 , HOH A:226BINDING SITE FOR RESIDUE HOH A 164
028DC1SOFTWAREVAL A:23 , PHE A:24 , PRO A:115 , HOH A:135 , HOH A:159BINDING SITE FOR RESIDUE HOH A 165
029DC2SOFTWAREPHE A:60 , HOH A:231BINDING SITE FOR RESIDUE HOH A 166
030DC3SOFTWARELEU A:50 , ASN A:51 , ASP A:52 , MSE A:83 , HOH A:157 , HOH A:202BINDING SITE FOR RESIDUE HOH A 167
031DC4SOFTWAREASP A:52 , GLN A:53 , THR A:54 , LEU A:55 , HOH A:162BINDING SITE FOR RESIDUE HOH A 168
032DC5SOFTWAREPHE A:24 , VAL A:66 , LEU A:113 , HOH A:159BINDING SITE FOR RESIDUE HOH A 169
033DC6SOFTWAREVAL A:66 , LYS A:98 , HOH A:161BINDING SITE FOR RESIDUE HOH A 170
034DC7SOFTWAREASP A:81 , HOH A:144 , HOH A:222BINDING SITE FOR RESIDUE HOH A 171
035DC8SOFTWAREGLY A:20 , LYS A:56 , PHE A:69 , HOH A:139 , HOH A:229BINDING SITE FOR RESIDUE HOH A 172
036DC9SOFTWARELYS A:59 , HOH A:164 , HOH A:178 , HOH A:209BINDING SITE FOR RESIDUE HOH A 173
037EC1SOFTWAREVAL A:66 , PRO A:115 , ASP A:116 , HOH A:193 , HOH A:234BINDING SITE FOR RESIDUE HOH A 174
038EC2SOFTWARELYS A:12 , THR A:27 , ASP A:28 , GLY A:31BINDING SITE FOR RESIDUE HOH A 175
039EC3SOFTWAREGLU A:21 , PRO A:22 , VAL A:66 , HOH A:246BINDING SITE FOR RESIDUE HOH A 176
040EC4SOFTWARETHR A:106 , HOH A:224BINDING SITE FOR RESIDUE HOH A 177
041EC5SOFTWARELYS A:59 , THR A:106 , HOH A:132 , HOH A:142 , HOH A:173 , HOH A:227BINDING SITE FOR RESIDUE HOH A 178
042EC6SOFTWARETHR A:106 , ALA A:107 , HOH A:156 , HOH A:199BINDING SITE FOR RESIDUE HOH A 179
043EC7SOFTWAREPHE A:24 , HOH A:152BINDING SITE FOR RESIDUE HOH A 180
044EC8SOFTWARELEU A:17 , ASN A:19 , GLY A:20BINDING SITE FOR RESIDUE HOH A 181
045EC9SOFTWAREHOH A:157 , HOH A:189BINDING SITE FOR RESIDUE HOH A 182
046FC1SOFTWAREILE A:78 , SER A:79 , SER A:80 , HOH A:190BINDING SITE FOR RESIDUE HOH A 183
047FC2SOFTWARELEU A:7 , GLN A:9 , THR A:45BINDING SITE FOR RESIDUE HOH A 184
048FC3SOFTWAREPHE A:10 , ILE A:11 , ASP A:28 , ALA A:29 , HOH A:254BINDING SITE FOR RESIDUE HOH A 185
049FC4SOFTWAREGLU A:18 , ASN A:19BINDING SITE FOR RESIDUE HOH A 186
050FC5SOFTWAREHOH A:149 , HOH A:210 , HOH A:226BINDING SITE FOR RESIDUE HOH A 187
051FC6SOFTWAREHOH A:158BINDING SITE FOR RESIDUE HOH A 188
052FC7SOFTWAREHOH A:155 , HOH A:182 , HOH A:221BINDING SITE FOR RESIDUE HOH A 189
053FC8SOFTWAREILE A:78 , HOH A:183 , HOH A:210 , HOH A:214BINDING SITE FOR RESIDUE HOH A 190
054FC9SOFTWARETHR A:106 , HOH A:132 , HOH A:150 , HOH A:249BINDING SITE FOR RESIDUE HOH A 191
055GC1SOFTWAREGLU A:21 , HOH A:223 , HOH A:232BINDING SITE FOR RESIDUE HOH A 192
056GC2SOFTWAREHOH A:161 , HOH A:174 , HOH A:253BINDING SITE FOR RESIDUE HOH A 193
057GC3SOFTWAREGLU A:18BINDING SITE FOR RESIDUE HOH A 194
058GC4SOFTWARESER A:79BINDING SITE FOR RESIDUE HOH A 195
059GC5SOFTWAREASP A:74 , HOH A:126 , HOH A:138 , HOH A:228BINDING SITE FOR RESIDUE HOH A 196
060GC6SOFTWARETHR A:106 , ALA A:107BINDING SITE FOR RESIDUE HOH A 197
061GC7SOFTWARETHR A:16 , LEU A:17 , GLN A:53BINDING SITE FOR RESIDUE HOH A 198
062GC8SOFTWAREASP A:81 , HOH A:179BINDING SITE FOR RESIDUE HOH A 199
063GC9SOFTWAREGLN A:35 , ASP A:37 , PRO B:117 , GLN B:118BINDING SITE FOR RESIDUE HOH A 200
064HC1SOFTWARETHR A:67 , ASP A:70 , THR A:96 , HOH A:213BINDING SITE FOR RESIDUE HOH A 201
065HC2SOFTWAREASN A:51 , HOH A:167BINDING SITE FOR RESIDUE HOH A 202
066HC3SOFTWAREASP A:70 , HOH A:213 , HOH A:223BINDING SITE FOR RESIDUE HOH A 203
067HC4SOFTWAREPRO A:115 , ASP A:116 , HOH A:207BINDING SITE FOR RESIDUE HOH A 204
068HC5SOFTWAREALA A:107BINDING SITE FOR RESIDUE HOH A 205
069HC6SOFTWAREGLN B:118BINDING SITE FOR RESIDUE HOH A 206
070HC7SOFTWAREHOH A:152 , HOH A:204 , HOH A:250 , PRO B:117BINDING SITE FOR RESIDUE HOH A 207
071HC8SOFTWAREGLY A:95 , THR A:96 , HOH A:213BINDING SITE FOR RESIDUE HOH A 208
072HC9SOFTWAREGLY A:57 , LYS A:59 , THR A:106 , HOH A:173 , HOH A:221 , HOH A:224 , HOH A:227 , HOH A:231BINDING SITE FOR RESIDUE HOH A 209
073IC1SOFTWAREVAL A:61 , ILE A:78 , HOH A:160 , HOH A:187 , HOH A:190BINDING SITE FOR RESIDUE HOH A 210
074IC2SOFTWAREGLN A:53BINDING SITE FOR RESIDUE HOH A 211
075IC3SOFTWARETHR A:16 , GLU A:18 , HOH A:220BINDING SITE FOR RESIDUE HOH A 212
076IC4SOFTWAREHOH A:201 , HOH A:203 , HOH A:208BINDING SITE FOR RESIDUE HOH A 213
077IC5SOFTWAREHOH A:190 , HOH A:245BINDING SITE FOR RESIDUE HOH A 214
078IC6SOFTWARELEU A:55BINDING SITE FOR RESIDUE HOH A 215
079IC7SOFTWAREGLU A:18 , HOH A:248BINDING SITE FOR RESIDUE HOH A 216
080IC8SOFTWARELEU A:7 , GLN A:42 , ALA A:43 , GLY A:44BINDING SITE FOR RESIDUE HOH A 217
081IC9SOFTWAREASN A:19 , HOH A:124BINDING SITE FOR RESIDUE HOH A 218
082JC1SOFTWARETHR A:67 , THR A:97 , LYS A:98 , HOH A:121 , HOH A:148BINDING SITE FOR RESIDUE HOH A 219
083JC2SOFTWAREHOH A:163 , HOH A:212BINDING SITE FOR RESIDUE HOH A 220
084JC3SOFTWARELYS A:59 , HOH A:140 , HOH A:151 , HOH A:189 , HOH A:209 , HOH A:224BINDING SITE FOR RESIDUE HOH A 221
085JC4SOFTWAREALA A:107 , HOH A:138 , HOH A:171BINDING SITE FOR RESIDUE HOH A 222
086JC5SOFTWAREHOH A:192 , HOH A:203 , HOH A:232BINDING SITE FOR RESIDUE HOH A 223
087JC6SOFTWAREGLY A:57 , HOH A:177 , HOH A:209 , HOH A:221BINDING SITE FOR RESIDUE HOH A 224
088JC7SOFTWAREHOH A:155BINDING SITE FOR RESIDUE HOH A 225
089JC8SOFTWAREHOH A:164 , HOH A:187BINDING SITE FOR RESIDUE HOH A 226
090JC9SOFTWARELYS A:59 , THR A:106 , HOH A:178 , HOH A:209 , HOH A:247BINDING SITE FOR RESIDUE HOH A 227
091KC1SOFTWAREASN A:108 , HOH A:126 , HOH A:147 , HOH A:196 , HOH A:238BINDING SITE FOR RESIDUE HOH A 228
092KC2SOFTWAREPHE A:69 , HOH A:172BINDING SITE FOR RESIDUE HOH A 229
093KC3SOFTWARELYS A:56 , PHE A:69 , ALA A:107 , HOH A:238BINDING SITE FOR RESIDUE HOH A 230
094KC4SOFTWARELYS A:59 , SER A:80 , ASP A:81 , GLY A:82 , HOH A:166 , HOH A:209BINDING SITE FOR RESIDUE HOH A 231
095KC5SOFTWAREGLU A:21 , HOH A:124 , HOH A:192 , HOH A:223BINDING SITE FOR RESIDUE HOH A 232
096KC6SOFTWARELYS A:56BINDING SITE FOR RESIDUE HOH A 233
097KC7SOFTWAREHOH A:125 , HOH A:133 , HOH A:174BINDING SITE FOR RESIDUE HOH A 234
098KC8SOFTWAREPHE A:10 , ASP A:28BINDING SITE FOR RESIDUE HOH A 235
099KC9SOFTWAREVAL A:61 , HOH A:242BINDING SITE FOR RESIDUE HOH A 236
100LC1SOFTWAREGLY A:95 , ASN B:121BINDING SITE FOR RESIDUE HOH A 237
101LC2SOFTWAREASN A:108 , HOH A:228 , HOH A:230BINDING SITE FOR RESIDUE HOH A 238
102LC3SOFTWAREHOH A:125 , HOH A:159BINDING SITE FOR RESIDUE HOH A 239
103LC4SOFTWARECYS A:34 , GLN A:35BINDING SITE FOR RESIDUE HOH A 240
104LC5SOFTWAREASP A:37 , THR A:39BINDING SITE FOR RESIDUE HOH A 241
105LC6SOFTWAREHOH A:236BINDING SITE FOR RESIDUE HOH A 242
106LC7SOFTWAREASP A:52 , HOH A:157BINDING SITE FOR RESIDUE HOH A 243
107LC8SOFTWAREGLY A:71 , ILE A:72 , ASP A:74 , ASP A:89 , ASP A:91 , LYS A:92 , THR A:93 , ZN A:503 , ASN B:121BINDING SITE FOR RESIDUE HOH A 244
108LC9SOFTWARESER A:80 , HOH A:214BINDING SITE FOR RESIDUE HOH A 245
109MC1SOFTWAREHOH A:176BINDING SITE FOR RESIDUE HOH A 246
110MC2SOFTWARETHR A:106 , HOH A:131 , HOH A:227BINDING SITE FOR RESIDUE HOH A 247
111MC3SOFTWAREPHE A:24 , HOH A:216BINDING SITE FOR RESIDUE HOH A 248
112MC4SOFTWARETHR A:106 , HOH A:191BINDING SITE FOR RESIDUE HOH A 249
113MC5SOFTWAREGLN A:35 , HOH A:207BINDING SITE FOR RESIDUE HOH A 250
114MC6SOFTWAREGLY A:71 , ASP A:74 , ASP A:91 , THR A:93 , HOH A:126 , ZN A:503BINDING SITE FOR RESIDUE HOH A 251
115MC7SOFTWAREPRO A:115 , ASP A:116 , ACT A:502BINDING SITE FOR RESIDUE HOH A 252
116MC8SOFTWARELYS A:98 , ASP A:116 , HOH A:123 , HOH A:193 , ACT A:502BINDING SITE FOR RESIDUE HOH A 253
117MC9SOFTWAREGLN A:9 , PHE A:10 , HOH A:185BINDING SITE FOR RESIDUE HOH A 254
118NC1SOFTWARELEU A:7 , THR A:41 , GLN A:42BINDING SITE FOR RESIDUE HOH A 255
119NC2SOFTWAREGLN A:32 , LEU A:50BINDING SITE FOR RESIDUE HOH A 256
120NC3SOFTWAREGLN A:9 , ILE A:38 , THR A:39BINDING SITE FOR RESIDUE HOH A 117
121NC4SOFTWAREPHE A:69 , ASP A:70 , GLY A:71BINDING SITE FOR RESIDUE HOH A 118
122NC5SOFTWAREBME A:501BINDING SITE FOR RESIDUE HOH A 119
123NC6SOFTWARELEU A:7 , GLN A:42BINDING SITE FOR RESIDUE HOH A 120
124NC7SOFTWAREHOH A:133 , HOH A:219BINDING SITE FOR RESIDUE HOH A 121
125NC8SOFTWAREHOH A:123BINDING SITE FOR RESIDUE HOH A 122
126NC9SOFTWARELYS A:98 , HOH A:122 , HOH A:253BINDING SITE FOR RESIDUE HOH A 123
127OC1SOFTWAREGLU A:21 , HOH A:218 , HOH A:232BINDING SITE FOR RESIDUE HOH A 124
128OC2SOFTWAREHOH A:234 , HOH A:239BINDING SITE FOR RESIDUE HOH A 125
129OC3SOFTWAREASP A:74 , HOH A:196 , HOH A:228 , HOH A:251BINDING SITE FOR RESIDUE HOH A 126
130OC4SOFTWARELEU A:49 , MSE A:83BINDING SITE FOR RESIDUE HOH A 127
131OC5SOFTWAREASN A:30BINDING SITE FOR RESIDUE HOH A 128
132OC6SOFTWAREILE A:11 , ILE A:38 , BME A:501BINDING SITE FOR RESIDUE HOH A 129
133OC7SOFTWAREGLN A:32 , VAL A:33 , ASN A:51 , ASP A:52 , GLN A:53BINDING SITE FOR RESIDUE HOH A 130
134OC8SOFTWAREHOH A:247BINDING SITE FOR RESIDUE HOH A 131
135OC9SOFTWARETHR A:106 , HOH A:178 , HOH A:191BINDING SITE FOR RESIDUE HOH A 132
136PC1SOFTWAREHOH A:121 , HOH A:234BINDING SITE FOR RESIDUE HOH A 133
137PC2SOFTWAREGLY A:95 , THR A:96BINDING SITE FOR RESIDUE HOH A 134
138PC3SOFTWAREHOH A:165BINDING SITE FOR RESIDUE HOH A 135
139PC4SOFTWARETYR A:26 , HOH A:163BINDING SITE FOR RESIDUE HOH A 136
140PC5SOFTWAREMSE A:83BINDING SITE FOR RESIDUE HOH A 137
141PC6SOFTWAREALA A:107 , HOH A:196 , HOH A:222BINDING SITE FOR RESIDUE HOH A 138
142PC7SOFTWAREHOH A:172BINDING SITE FOR RESIDUE HOH A 139
143PC8SOFTWAREHOH A:162 , HOH A:221BINDING SITE FOR RESIDUE HOH A 140

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3N55)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3N55)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3N55)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3N55)

(-) Exons   (0, 0)

(no "Exon" information available for 3N55)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:111
 aligned with Q8EGA7_SHEON | Q8EGA7 from UniProtKB/TrEMBL  Length:125

    Alignment length:111
                                    15        25        35        45        55        65        75        85        95       105       115 
         Q8EGA7_SHEON     6 GLAQFIKVNVTLENGEPVFIYTDANGQVCQGDITVTQAGTITYLLNDQTLKGLKFVGVGFVTPFDGIIDAVTISSDGMLVQLVDLDKTPGTTKFQFVLSNTANTLLVLSPD 116
               SCOP domains d3n55.1 A:,B: Hypothetical protein SO1698                                                                       SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee..eeeeeee.....ee...eee...eeeeeeeee......eeeeeee.........eeee.....eeeeee.....eeeeeeeeee.......ee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                 3n55 A   6 GLAQFIKVNVTLENGEPVFIYTDANGQVCQGDITVTQAGTITYLLNDQTLKGLKFVGVGFVTPFDGIIDAVTISSDGmLVQLVDLDKTPGTTKFQFVLSNTANTLLVLSPD 116
                                    15        25        35        45        55        65        75       |85        95       105       115 
                                                                                                        83-MSE                             


Chain B from PDB  Type:PROTEIN  Length:7
 aligned with Q8EGA7_SHEON | Q8EGA7 from UniProtKB/TrEMBL  Length:125

    Alignment length:7
         Q8EGA7_SHEON   117 PQIINRP 123
               SCOP domains d3n55.1 SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author .eeee.. Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                 3n55 B 117 PQIINRP 123
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0 ; only for superseded entry 2AI4: 1,1)

(no "CATH Domain" information available for 3N55, only for superseded entry 2AI4 replaced by 3N55)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3N55)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q8EGA7_SHEON | Q8EGA7)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0003674    molecular_function    A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process.
biological process
    GO:0008150    biological_process    A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.
cellular component
    GO:0005575    cellular_component    A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular structures (e.g., cytoplasmic side of plasma membrane) or compartments (e.g., mitochondrion), and (2) the stable macromolecular complexes of which they are parts (e.g., the ribosome).

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  3n55
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8EGA7_SHEON | Q8EGA7: 3njf 3njg 3njh 3nji 3njj 3njk 3njl 3njm 3njn

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3N55)