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(-) Description

Title :  STRUCTURE OF GATDE TRNA-DEPENDENT AMIDOTRANSFERASE FROM PYROCOCCUS ABYSSI
 
Authors :  E. Schmitt, M. Panvert, S. Blanquet, Y. Mechulam
Date :  18 May 05  (Deposition) - 18 Oct 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  X-Ray; 3D Structure; Asparaginase 1 Family; Gatd Subfamily, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Schmitt, M. Panvert, S. Blanquet, Y. Mechulam
Structural Basis For Trna-Dependent Amidotransferase Function
Structure V. 13 1421 2005
PubMed-ID: 16216574  |  Reference-DOI: 10.1016/J.STR.2005.06.016
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT D
    Chains: A, B
    EC Number: 6.3.5.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET3A
    Expression System Strain: B834-DE3
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GATD
    Organism Scientific: PYROCOCCUS ABYSSI
    Organism Taxid: 29292
    Synonym: GLU-ADT SUBUNIT D
 
Molecule 2 - GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT E
    Chains: C, D
    EC Number: 6.3.5.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET3A
    Expression System Strain: B834-DE3
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GATE
    Organism Scientific: PYROCOCCUS ABYSSI
    Organism Taxid: 29292
    Synonym: GLU-ADT SUBUNIT E

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 30)

Asymmetric/Biological Unit (2, 30)
No.NameCountTypeFull Name
1ASP2Mod. Amino AcidASPARTIC ACID
2MSE28Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:145 , SER A:146 , GLU A:147 , THR A:178 , ASP A:179 , ALA A:204 , TYR B:376BINDING SITE FOR RESIDUE ASP A 1000
2AC2SOFTWARETYR A:376 , SER B:146 , GLU B:147 , THR B:178 , ASP B:179 , GLN B:205BINDING SITE FOR RESIDUE ASP B 5000

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ZQ1)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Gly C:95 -Pro C:96
2Leu C:354 -Pro C:355
3Gly D:95 -Pro D:96
4Leu D:354 -Pro D:355

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ZQ1)

(-) PROSITE Motifs  (4, 8)

Asymmetric/Biological Unit (4, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ASN_GLN_ASE_3PS51732 Asparaginase / glutaminase domain profile.GATD_PYRAB92-422
 		  2A:92-422
B:92-422
2ASN_GLN_ASE_1PS00144 Asparaginase / glutaminase active site signature 1.GATD_PYRAB96-104
 		  2A:96-104
B:96-104
3ASN_GLN_ASE_2PS00917 Asparaginase / glutaminase active site signature 2.GATD_PYRAB171-181
 		  2A:171-181
B:171-181
4GATBPS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature.GATE_PYRAB180-194
 		  2C:180-194
D:180-194

(-) Exons   (0, 0)

(no "Exon" information available for 1ZQ1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:438
 aligned with GATD_PYRAB | Q9V0T9 from UniProtKB/Swiss-Prot  Length:438

    Alignment length:438
                                                                                                                                                                                                                                                                                                                                                                                                                                                                              438 
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431      | 
          GATD_PYRAB      2 RVDEFLKERNINVGDFVRITKEEDGEEVTYEGYIMPPYELSAGDTLVLKLENGYNIGIALEKIRRIEVLERAKVKPEVHFEALIEGKPGLPEVTIIGTGGTIASRIDYETGAVYPAFTAEELAKAVPEIFEVANVKPKLLFNIFSEDMKPKHWVKIAHEVAKALNSGDYGVVVAHGTDTMGYTAAALSFMLRNLGKPVVLVGAQRSSDRPSSDAAMNLICSVRMATSEVAEVMVVMHGETGDTYCLAHRGTKVRKMHTSRRDAFRSINDVPIAKIWPNGEIEFLRKDYRKRSDEEVEVDDKIEEKVALVKVYPGISSEIIDFLVDKGYKGIVIEGTGLGHTPNDIIPSIERAVEEGVAVCMTSQCIYGRVNLNVYSTGRKLLKAGVIPCEDMLPETAYVKLMWVLGHTQNLEEVRKMMLTNYAGEITPYTRFDTYLR-    -
               SCOP domains d1zq1a1 A:2-75 Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD        d1zq1a2 A:76-438 Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD                                                                                                                                                                                                                                                                                                       - SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhh......eeeeeee....eee..eee..........eeeeee....eeeee...eeeeeeee.....................eeeeee......eeee....eeee..hhhhhhhhhhhhhhh.eeeeee....hhhhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhee.....eeee...........hhhhhhhhhhhhhh.....eeeeee.......eeeee...eee........eee......eee.....eee.............ee.......eeeee......hhhhhhhhhh...eeeeee......hhhhhhhhhhhhhh..eeeeee...........hhhhhhhhhh..ee....hhhhhhhhhhhhhh...hhhhhhhhhhh.................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) ------------------------------------------------------------------------------------------ASN_GLN_ASE_3  PDB: A:92-422 UniProt: 92-422                                                                                                                                                                                                                                                                                               ----------------- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------ASN_GLN_A------------------------------------------------------------------ASN_GLN_ASE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1zq1 A    2 RVDEFLKERNINVGDFVRITKEEDGEEVTYEGYImPPYELSAGDTLVLKLENGYNIGIALEKIRRIEVLERAKVKPEVHFEALIEGKPGLPEVTIIGTGGTIASRIDYETGAVYPAFTAEELAKALPEIFEVANVKPKLLFNIFSEDmKPKHWVKIAHEVAKALNSGDYGVVVAHGTDTmGYTAAALSFmLRNLGKPVVLVGAQRSSDRPSSDAAmNLICSVRmATSEVAEVmVVmHGETGDTYCLAHRGTKVRKmHTSRRDAFRSINDVPIAKIWPNGEIEFLRKDYRKRSDEEVEVDDKIEEKVALVKVYPGISSEIIDFLVDKGYKGIVIEGTGLGHTPNDIIPSIERAVEEGVAVCmTSQCIYGRVNLNVYSTGRKLLKAGVIPCEDmLPETAYVKLmWVLGHTQNLEEVRKmmLTNYAGEITPYTRFDTYLRD 1000
                                    11        21        31    |   41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211     | 221   |   231  |  | 241       251     | 261       271       281       291       301       311       321       331       341       351       361|      371       381       391 |     401 |     411      |421       431      ||
                                                             36-MSE                                                                                                          149-MSE                         181-MSE   191-MSE                   217-MSE 225-MSE  234-MSE                257-MSE                                                                                                  362-MSE                        393-MSE   403-MSE        418-MSE             438|
                                                                                                                                                                                                                                                                     237-MSE                                                                                                                                                                               419-MSE            1000


Chain B from PDB  Type:PROTEIN  Length:438
 aligned with GATD_PYRAB | Q9V0T9 from UniProtKB/Swiss-Prot  Length:438

    Alignment length:438
                                                                                                                                                                                                                                                                                                                                                                                                                                                                              438 
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431      | 
          GATD_PYRAB      2 RVDEFLKERNINVGDFVRITKEEDGEEVTYEGYIMPPYELSAGDTLVLKLENGYNIGIALEKIRRIEVLERAKVKPEVHFEALIEGKPGLPEVTIIGTGGTIASRIDYETGAVYPAFTAEELAKAVPEIFEVANVKPKLLFNIFSEDMKPKHWVKIAHEVAKALNSGDYGVVVAHGTDTMGYTAAALSFMLRNLGKPVVLVGAQRSSDRPSSDAAMNLICSVRMATSEVAEVMVVMHGETGDTYCLAHRGTKVRKMHTSRRDAFRSINDVPIAKIWPNGEIEFLRKDYRKRSDEEVEVDDKIEEKVALVKVYPGISSEIIDFLVDKGYKGIVIEGTGLGHTPNDIIPSIERAVEEGVAVCMTSQCIYGRVNLNVYSTGRKLLKAGVIPCEDMLPETAYVKLMWVLGHTQNLEEVRKMMLTNYAGEITPYTRFDTYLR-    -
               SCOP domains d1zq1b1 B:2-75 Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD        d1zq1b2 B:76-438 Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD                                                                                                                                                                                                                                                                                                       - SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) -------------------------------------------------------------------------------------------Asparaginase-1zq1B01 B:93-416                                                                                                                                                                                                                                                                                                       ----------------------- Pfam domains (1)
           Pfam domains (2) -------------------------------------------------------------------------------------------Asparaginase-1zq1B02 B:93-416                                                                                                                                                                                                                                                                                                       ----------------------- Pfam domains (2)
         Sec.struct. author hhhhhhhhh......eeeeeeee..eeeeeeeee..........eeeeee....eeeee...eeeeeeee.....................eeeeee......eee......eee..hhhhhhhhhhhhhhh.eeeeee....hhhhhhhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhh......eeee...........hhhhhhhhhhhhhh.....eeeeee.......eeeee...eee....hhh.eee......eee.....eee......................eeeee......hhhhhhhhhh...eeeee..........hhhhhhhhhhh..eeee.............hhhhhhhhhh..ee....hhhhhhhhhhhhhh...hhhhhhhhhh...........hhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) ------------------------------------------------------------------------------------------ASN_GLN_ASE_3  PDB: B:92-422 UniProt: 92-422                                                                                                                                                                                                                                                                                               ----------------- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------ASN_GLN_A------------------------------------------------------------------ASN_GLN_ASE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1zq1 B    2 RVDEFLKERNINVGDFVRITKEEDGEEVTYEGYImPPYELSAGDTLVLKLENGYNIGIALEKIRRIEVLERAKVKPEVHFEALIEGKPGLPEVTIIGTGGTIASRIDYETGAVYPAFTAEELAKALPEIFEVANVKPKLLFNIFSEDmKPKHWVKIAHEVAKALNSGDYGVVVAHGTDTmGYTAAALSFmLRNLGKPVVLVGAQRSSDRPSSDAAmNLICSVRmATSEVAEVmVVmHGETGDTYCLAHRGTKVRKmHTSRRDAFRSINDVPIAKIWPNGEIEFLRKDYRKRSDEEVEVDDKIEEKVALVKVYPGISSEIIDFLVDKGYKGIVIEGTGLGHTPNDIIPSIERAVEEGVAVCmTSQCIYGRVNLNVYSTGRKLLKAGVIPCEDmLPETAYVKLmWVLGHTQNLEEVRKmmLTNYAGEITPYTRFDTYLRD 5000
                                    11        21        31    |   41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211     | 221   |   231  |  | 241       251     | 261       271       281       291       301       311       321       331       341       351       361|      371       381       391 |     401 |     411      |421       431      ||
                                                             36-MSE                                                                                                          149-MSE                         181-MSE   191-MSE                   217-MSE 225-MSE  234-MSE                257-MSE                                                                                                  362-MSE                        393-MSE   403-MSE        418-MSE             438|
                                                                                                                                                                                                                                                                     237-MSE                                                                                                                                                                               419-MSE            5000


Chain C from PDB  Type:PROTEIN  Length:508
 aligned with GATE_PYRAB | Q9V0U0 from UniProtKB/Swiss-Prot  Length:633

    Alignment length:508
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504        
          GATE_PYRAB      5 TDKFNYEELGLKVGLEIHRQLDTKKLFSPVPSELSDKVEFTFQRRLRPTMSELGEIDPAALEEFKKGRVYVYEGNYELTDLVYMDEEPPRGPDREALEVALQIAYLLNAKPVDEVYYMRKIVIDGSNVSGFQRTAIIATDGKVETPWGAVGIPTICLEEDAARIIERKDKEVIYRLDRLGIPLIEISTTPDIHHPEQAKVVAKFIGDALRATKKVKRGLGTIRQDLNVSIKGGARIEIKGVQELDMIPIIIEREVERQLNLLKIRDELRKRGVKPKDIKEEFYDVTDIFENTKSKIIARVIKKGGKVLAIKLPKFRGLIGREIQPGRRLGTEFADRAKKYVPGIFHIDELPNYGISQEEVNKVIERLNLSEEDAFVLVAAEEEKAKNALREVIKRAREAIEGVPEETRRALPDGNTEYMRPLPGKARMYPETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYKLDRSLAQTLVDDERDELFEELVSMGVKPSLAASILVVVLKG  512
               SCOP domains d1zq1c3 C:5-276,C:408-456 Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE                                                                                                                                                                                                   d1zq1c2 C:277-407 Glutamyl-tRNA(gln) amidotransferase subunit E, GatE, insert domain                                               d1zq1c3 C:5-276,C:408-456                        d1zq1c1 C:457-512                                        SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeee...................eeeee.....ee.....hhhhhhhhhh..eeeeee.....hhhhh........hhhhhhhhhhhhhhh..ee..ee..eeee.........eeee.eeeeeeee......eeeeeeeeee...eeeeee..eeeee......eeeeee......hhhhhhhhhhhhhhhhhhh.........eeeeeee.......eeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh....ee.........hhhhhhhhhh..eeee.ee.........eee..eehhhhhhhhhh......ee.hhh.....hhhhhhhhhhhh......eeeeeeehhhhhhhhhhhhhhhhhhhhhh....eeee.....eeeee.......eee......ee.hhhhhhhhhh....hhhhhhhhhhh....hhhhhhhhhhh.hhhhhhhhhhh....hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATB           ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (3)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1zq1 C    5 TDKFNYEELGLKVGLEIHRQLDTKKLFSPVPSELSDKVEFTFQRRLRPTMSELGEIDPAALEEFKKGRVYVYEGNYELTDLVYMDEEPPRGPDREALEVALQIAYLLNAKPVDEVYYMRKIVIDGSNVSGFQRTAIIATDGKVETPWGAVGIPTICLEEDAARIIERKDKEVIYRLDRLGIPLIEISTTPDIHHPEQAKVVAKFIGDALRATKKVKRGLGTIRQDLNVSIKGGARIEIKGVQELDMIPIIIEREVERQLNLLKIRDELRKRGVKPKDIKEEFYDVTDIFENTKSKIIARVIKKGGKVLAIKLPKFRGLIGREIQPGRRLGTEFADRAKKYVPGIFHIDELPNYGISQEEVNKVIERLNLSEEDAFVLVAAEEEKAKNALREVIKRAREAIEGVPEETRRALPDGNTEYMRPLPGKARMYPETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYKLDRSLAQTLVDDERDELFEELVSMGVKPSLAASILVVVLKG  512
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504        


Chain D from PDB  Type:PROTEIN  Length:508
 aligned with GATE_PYRAB | Q9V0U0 from UniProtKB/Swiss-Prot  Length:633

    Alignment length:508
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504        
          GATE_PYRAB      5 TDKFNYEELGLKVGLEIHRQLDTKKLFSPVPSELSDKVEFTFQRRLRPTMSELGEIDPAALEEFKKGRVYVYEGNYELTDLVYMDEEPPRGPDREALEVALQIAYLLNAKPVDEVYYMRKIVIDGSNVSGFQRTAIIATDGKVETPWGAVGIPTICLEEDAARIIERKDKEVIYRLDRLGIPLIEISTTPDIHHPEQAKVVAKFIGDALRATKKVKRGLGTIRQDLNVSIKGGARIEIKGVQELDMIPIIIEREVERQLNLLKIRDELRKRGVKPKDIKEEFYDVTDIFENTKSKIIARVIKKGGKVLAIKLPKFRGLIGREIQPGRRLGTEFADRAKKYVPGIFHIDELPNYGISQEEVNKVIERLNLSEEDAFVLVAAEEEKAKNALREVIKRAREAIEGVPEETRRALPDGNTEYMRPLPGKARMYPETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYKLDRSLAQTLVDDERDELFEELVSMGVKPSLAASILVVVLKG  512
               SCOP domains d1zq1d3 D:5-276,D:408-456 Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE                                                                                                                                                                                                   d1zq1d2 D:277-407 Glutamyl-tRNA(gln) amidotransferase subunit E, GatE, insert domain                                               d1zq1d3 D:5-276,D:408-456                        d1zq1d1 D:457-512                                        SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAD-1zq1D01 D:301-393                                                                        ---------------------------------------------------------------------------------------------GatB_Yqey-1zq1D03          Pfam domains (1)
           Pfam domains (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAD-1zq1D02 D:301-393                                                                        ---------------------------------------------------------------------------------------------GatB_Yqey-1zq1D04          Pfam domains (2)
           Pfam domains (3) --------GatB_N-1zq1D05 D:13-451                                                                                                                                                                                                                                                                                                                                                                                                                                ------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) --------GatB_N-1zq1D06 D:13-451                                                                                                                                                                                                                                                                                                                                                                                                                                ------------------------------------------------------------- Pfam domains (4)
         Sec.struct. author ...........eeeeeeeee...................eeeee............hhhhhhhhhh..eeeeee.....hhhhhh.......hhhhhhhhhhhhhh...ee..ee.eeeee.........eeeeeeeeeeeee......eeeeeeeeee...eeee....eeeee......eeeeee......hhhhhhhhhhhhhhhhhhh.....hhh.eeeeeeee......eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhh...hhhhhhhhhh..eee..ee.........eee..eehhhhhhhhhhh.....ee.........hhhhhhhhhhhh......eeeeeeehhhhhhhhhhhhhhhhhhhhhh...eeeee.....eeeeee......eee......ee.hhhhhhhhhhh...hhhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhh.....hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATB           ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (3)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1zq1 D    5 TDKFNYEELGLKVGLEIHRQLDTKKLFSPVPSELSDKVEFTFQRRLRPTMSELGEIDPAALEEFKKGRVYVYEGNYELTDLVYMDEEPPRGPDREALEVALQIAYLLNAKPVDEVYYMRKIVIDGSNVSGFQRTAIIATDGKVETPWGAVGIPTICLEEDAARIIERKDKEVIYRLDRLGIPLIEISTTPDIHHPEQAKVVAKFIGDALRATKKVKRGLGTIRQDLNVSIKGGARIEIKGVQELDMIPIIIEREVERQLNLLKIRDELRKRGVKPKDIKEEFYDVTDIFENTKSKIIARVIKKGGKVLAIKLPKFRGLIGREIQPGRRLGTEFADRAKKYVPGIFHIDELPNYGISQEEVNKVIERLNLSEEDAFVLVAAEEEKAKNALREVIKRAREAIEGVPEETRRALPDGNTEYMRPLPGKARMYPETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYKLDRSLAQTLVDDERDELFEELVSMGVKPSLAASILVVVLKG  512
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (5, 10)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1ZQ1)

(-) Pfam Domains  (4, 8)

Asymmetric/Biological Unit
(-)
Clan: GAD (2)
(-)
Clan: GatB_YqeY (3)
(-)
Clan: no clan defined [family: Asparaginase] (13)
(-)
Clan: no clan defined [family: GatB_N] (2)

(-) Gene Ontology  (11, 16)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (GATD_PYRAB | Q9V0T9)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0004067    asparaginase activity    Catalysis of the reaction: L-asparagine + H2O = L-aspartate + NH3.
    GO:0050567    glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity    Catalysis of the reaction: L-glutamine + glutamyl-tRNA(Gln) + ATP = L-glutamate + glutaminyl-tRNA(Gln) + phosphate + ADP.
    GO:0016874    ligase activity    Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0006520    cellular amino acid metabolic process    The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.
    GO:0006450    regulation of translational fidelity    Any process that modulates the ability of the translational apparatus to interpret the genetic code.
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.

Chain C,D   (GATE_PYRAB | Q9V0U0)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0004812    aminoacyl-tRNA ligase activity    Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
    GO:0016884    carbon-nitrogen ligase activity, with glutamine as amido-N-donor    Catalysis of the transfer of the amide nitrogen of glutamine to a variety of substrates. GATases catalyze two separate reactions at two active sites, which are located either on a single polypeptide chain or on different subunits. In the glutaminase reaction, glutamine is hydrolyzed to glutamate and ammonia, which is added to an acceptor substrate in the synthase reaction.
    GO:0050567    glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity    Catalysis of the reaction: L-glutamine + glutamyl-tRNA(Gln) + ATP = L-glutamate + glutaminyl-tRNA(Gln) + phosphate + ADP.
    GO:0016874    ligase activity    Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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