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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF GATDE TRNA-DEPENDENT AMIDOTRANSFERASE FROM PYROCOCCUS ABYSSI
Keywords X-RAY; 3D STRUCTURE; ASPARAGINASE 1 FAMILY; GATD SUBFAMILY, LYASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1ZQ1     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT D  A 437 3294 112
2  Protein   GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT D  B 437 3294 112
3  Protein   GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT E  C 508 4005 0
4  Protein   GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT E  D 508 3966 0
5  Protein   GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT D  A 1 0 9
6  Protein   GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT D  B 1 0 9
7 Water     68 0 68
total       1960 14559 310

Proteins
Unit 1 ARG2 VAL3 ASP4 GLU5 PHE6 LEU7 LYS8 GLU9 ARG10 ASN11 ILE12 ASN13 VAL14 GLY15 ASP16 PHE17 VAL18 ARG19 ILE20 THR21 LYS22 GLU23 GLU24 ASP25 GLY26 GLU27 GLU28 VAL29 THR30 TYR31 GLU32 GLY33 TYR34 ILE35 MSE36 PRO37 PRO38 TYR39 GLU40 LEU41 SER42 ALA43 GLY44 ASP45 THR46 LEU47 VAL48 LEU49 LYS50 LEU51 GLU52 ASN53 GLY54 TYR55 ASN56 ILE57 GLY58 ILE59 ALA60 LEU61 GLU62 LYS63 ILE64 ARG65 ARG66 ILE67 GLU68 VAL69 LEU70 GLU71 ARG72 ALA73 LYS74 VAL75 LYS76 PRO77 GLU78 VAL79 HIS80 PHE81 GLU82 ALA83 LEU84 ILE85 GLU86 GLY87 LYS88 PRO89 GLY90 LEU91 PRO92 GLU93 VAL94 THR95 ILE96 ILE97 GLY98 THR99 GLY100 GLY101 THR102 ILE103 ALA104 SER105 ARG106 ILE107 ASP108 TYR109 GLU110 THR111 GLY112 ALA113 VAL114 TYR115 PRO116 ALA117 PHE118 THR119 ALA120 GLU121 GLU122 LEU123 ALA124 LYS125 ALA126 LEU127 PRO128 GLU129 ILE130 PHE131 GLU132 VAL133 ALA134 ASN135 VAL136 LYS137 PRO138 LYS139 LEU140 LEU141 PHE142 ASN143 ILE144 PHE145 SER146 GLU147 ASP148 MSE149 LYS150 PRO151 LYS152 HIS153 TRP154 VAL155 LYS156 ILE157 ALA158 HIS159 GLU160 VAL161 ALA162 LYS163 ALA164 LEU165 ASN166 SER167 GLY168 ASP169 TYR170 GLY171 VAL172 VAL173 VAL174 ALA175 HIS176 GLY177 THR178 ASP179 THR180 MSE181 GLY182 TYR183 THR184 ALA185 ALA186 ALA187 LEU188 SER189 PHE190 MSE191 LEU192 ARG193 ASN194 LEU195 GLY196 LYS197 PRO198 VAL199 VAL200 LEU201 VAL202 GLY203 ALA204 GLN205 ARG206 SER207 SER208 ASP209 ARG210 PRO211 SER212 SER213 ASP214 ALA215 ALA216 MSE217 ASN218 LEU219 ILE220 CYS221 SER222 VAL223 ARG224 MSE225 ALA226 THR227 SER228 GLU229 VAL230 ALA231 GLU232 VAL233 MSE234 VAL235 VAL236 MSE237 HIS238 GLY239 GLU240 THR241 GLY242 ASP243 THR244 TYR245 CYS246 LEU247 ALA248 HIS249 ARG250 GLY251 THR252 LYS253 VAL254 ARG255 LYS256 MSE257 HIS258 THR259 SER260 ARG261 ARG262 ASP263 ALA264 PHE265 ARG266 SER267 ILE268 ASN269 ASP270 VAL271 PRO272 ILE273 ALA274 LYS275 ILE276 TRP277 PRO278 ASN279 GLY280 GLU281 ILE282 GLU283 PHE284 LEU285 ARG286 LYS287 ASP288 TYR289 ARG290 LYS291 ARG292 SER293 ASP294 GLU295 GLU296 VAL297 GLU298 VAL299 ASP300 ASP301 LYS302 ILE303 GLU304 GLU305 LYS306 VAL307 ALA308 LEU309 VAL310 LYS311 VAL312 TYR313 PRO314 GLY315 ILE316 SER317 SER318 GLU319 ILE320 ILE321 ASP322 PHE323 LEU324 VAL325 ASP326 LYS327 GLY328 TYR329 LYS330 GLY331 ILE332 VAL333 ILE334 GLU335 GLY336 THR337 GLY338 LEU339 GLY340 HIS341 THR342 PRO343 ASN344 ASP345 ILE346 ILE347 PRO348 SER349 ILE350 GLU351 ARG352 ALA353 VAL354 GLU355 GLU356 GLY357 VAL358 ALA359 VAL360 CYS361 MSE362 THR363 SER364 GLN365 CYS366 ILE367 TYR368 GLY369 ARG370 VAL371 ASN372 LEU373 ASN374 VAL375 TYR376 SER377 THR378 GLY379 ARG380 LYS381 LEU382 LEU383 LYS384 ALA385 GLY386 VAL387 ILE388 PRO389 CYS390 GLU391 ASP392 MSE393 LEU394 PRO395 GLU396 THR397 ALA398 TYR399 VAL400 LYS401 LEU402 MSE403 TRP404 VAL405 LEU406 GLY407 HIS408 THR409 GLN410 ASN411 LEU412 GLU413 GLU414 VAL415 ARG416 LYS417 MSE418 MSE419 LEU420 THR421 ASN422 TYR423 ALA424 GLY425 GLU426 ILE427 THR428 PRO429 TYR430 THR431 ARG432 PHE433 ASP434 THR435 TYR436 LEU437 ARG438
Unit 2 ARG2 VAL3 ASP4 GLU5 PHE6 LEU7 LYS8 GLU9 ARG10 ASN11 ILE12 ASN13 VAL14 GLY15 ASP16 PHE17 VAL18 ARG19 ILE20 THR21 LYS22 GLU23 GLU24 ASP25 GLY26 GLU27 GLU28 VAL29 THR30 TYR31 GLU32 GLY33 TYR34 ILE35 MSE36 PRO37 PRO38 TYR39 GLU40 LEU41 SER42 ALA43 GLY44 ASP45 THR46 LEU47 VAL48 LEU49 LYS50 LEU51 GLU52 ASN53 GLY54 TYR55 ASN56 ILE57 GLY58 ILE59 ALA60 LEU61 GLU62 LYS63 ILE64 ARG65 ARG66 ILE67 GLU68 VAL69 LEU70 GLU71 ARG72 ALA73 LYS74 VAL75 LYS76 PRO77 GLU78 VAL79 HIS80 PHE81 GLU82 ALA83 LEU84 ILE85 GLU86 GLY87 LYS88 PRO89 GLY90 LEU91 PRO92 GLU93 VAL94 THR95 ILE96 ILE97 GLY98 THR99 GLY100 GLY101 THR102 ILE103 ALA104 SER105 ARG106 ILE107 ASP108 TYR109 GLU110 THR111 GLY112 ALA113 VAL114 TYR115 PRO116 ALA117 PHE118 THR119 ALA120 GLU121 GLU122 LEU123 ALA124 LYS125 ALA126 LEU127 PRO128 GLU129 ILE130 PHE131 GLU132 VAL133 ALA134 ASN135 VAL136 LYS137 PRO138 LYS139 LEU140 LEU141 PHE142 ASN143 ILE144 PHE145 SER146 GLU147 ASP148 MSE149 LYS150 PRO151 LYS152 HIS153 TRP154 VAL155 LYS156 ILE157 ALA158 HIS159 GLU160 VAL161 ALA162 LYS163 ALA164 LEU165 ASN166 SER167 GLY168 ASP169 TYR170 GLY171 VAL172 VAL173 VAL174 ALA175 HIS176 GLY177 THR178 ASP179 THR180 MSE181 GLY182 TYR183 THR184 ALA185 ALA186 ALA187 LEU188 SER189 PHE190 MSE191 LEU192 ARG193 ASN194 LEU195 GLY196 LYS197 PRO198 VAL199 VAL200 LEU201 VAL202 GLY203 ALA204 GLN205 ARG206 SER207 SER208 ASP209 ARG210 PRO211 SER212 SER213 ASP214 ALA215 ALA216 MSE217 ASN218 LEU219 ILE220 CYS221 SER222 VAL223 ARG224 MSE225 ALA226 THR227 SER228 GLU229 VAL230 ALA231 GLU232 VAL233 MSE234 VAL235 VAL236 MSE237 HIS238 GLY239 GLU240 THR241 GLY242 ASP243 THR244 TYR245 CYS246 LEU247 ALA248 HIS249 ARG250 GLY251 THR252 LYS253 VAL254 ARG255 LYS256 MSE257 HIS258 THR259 SER260 ARG261 ARG262 ASP263 ALA264 PHE265 ARG266 SER267 ILE268 ASN269 ASP270 VAL271 PRO272 ILE273 ALA274 LYS275 ILE276 TRP277 PRO278 ASN279 GLY280 GLU281 ILE282 GLU283 PHE284 LEU285 ARG286 LYS287 ASP288 TYR289 ARG290 LYS291 ARG292 SER293 ASP294 GLU295 GLU296 VAL297 GLU298 VAL299 ASP300 ASP301 LYS302 ILE303 GLU304 GLU305 LYS306 VAL307 ALA308 LEU309 VAL310 LYS311 VAL312 TYR313 PRO314 GLY315 ILE316 SER317 SER318 GLU319 ILE320 ILE321 ASP322 PHE323 LEU324 VAL325 ASP326 LYS327 GLY328 TYR329 LYS330 GLY331 ILE332 VAL333 ILE334 GLU335 GLY336 THR337 GLY338 LEU339 GLY340 HIS341 THR342 PRO343 ASN344 ASP345 ILE346 ILE347 PRO348 SER349 ILE350 GLU351 ARG352 ALA353 VAL354 GLU355 GLU356 GLY357 VAL358 ALA359 VAL360 CYS361 MSE362 THR363 SER364 GLN365 CYS366 ILE367 TYR368 GLY369 ARG370 VAL371 ASN372 LEU373 ASN374 VAL375 TYR376 SER377 THR378 GLY379 ARG380 LYS381 LEU382 LEU383 LYS384 ALA385 GLY386 VAL387 ILE388 PRO389 CYS390 GLU391 ASP392 MSE393 LEU394 PRO395 GLU396 THR397 ALA398 TYR399 VAL400 LYS401 LEU402 MSE403 TRP404 VAL405 LEU406 GLY407 HIS408 THR409 GLN410 ASN411 LEU412 GLU413 GLU414 VAL415 ARG416 LYS417 MSE418 MSE419 LEU420 THR421 ASN422 TYR423 ALA424 GLY425 GLU426 ILE427 THR428 PRO429 TYR430 THR431 ARG432 PHE433 ASP434 THR435 TYR436 LEU437 ARG438
Unit 3 THR5 ASP6 LYS7 PHE8 ASN9 TYR10 GLU11 GLU12 LEU13 GLY14 LEU15 LYS16 VAL17 GLY18 LEU19 GLU20 ILE21 HIS22 ARG23 GLN24 LEU25 ASP26 THR27 LYS28 LYS29 LEU30 PHE31 SER32 PRO33 VAL34 PRO35 SER36 GLU37 LEU38 SER39 ASP40 LYS41 VAL42 GLU43 PHE44 THR45 PHE46 GLN47 ARG48 ARG49 LEU50 ARG51 PRO52 THR53 MET54 SER55 GLU56 LEU57 GLY58 GLU59 ILE60 ASP61 PRO62 ALA63 ALA64 LEU65 GLU66 GLU67 PHE68 LYS69 LYS70 GLY71 ARG72 VAL73 TYR74 VAL75 TYR76 GLU77 GLY78 ASN79 TYR80 GLU81 LEU82 THR83 ASP84 LEU85 VAL86 TYR87 MET88 ASP89 GLU90 GLU91 PRO92 PRO93 ARG94 GLY95 PRO96 ASP97 ARG98 GLU99 ALA100 LEU101 GLU102 VAL103 ALA104 LEU105 GLN106 ILE107 ALA108 TYR109 LEU110 LEU111 ASN112 ALA113 LYS114 PRO115 VAL116 ASP117 GLU118 VAL119 TYR120 TYR121 MET122 ARG123 LYS124 ILE125 VAL126 ILE127 ASP128 GLY129 SER130 ASN131 VAL132 SER133 GLY134 PHE135 GLN136 ARG137 THR138 ALA139 ILE140 ILE141 ALA142 THR143 ASP144 GLY145 LYS146 VAL147 GLU148 THR149 PRO150 TRP151 GLY152 ALA153 VAL154 GLY155 ILE156 PRO157 THR158 ILE159 CYS160 LEU161 GLU162 GLU163 ASP164 ALA165 ALA166 ARG167 ILE168 ILE169 GLU170 ARG171 LYS172 ASP173 LYS174 GLU175 VAL176 ILE177 TYR178 ARG179 LEU180 ASP181 ARG182 LEU183 GLY184 ILE185 PRO186 LEU187 ILE188 GLU189 ILE190 SER191 THR192 THR193 PRO194 ASP195 ILE196 HIS197 HIS198 PRO199 GLU200 GLN201 ALA202 LYS203 VAL204 VAL205 ALA206 LYS207 PHE208 ILE209 GLY210 ASP211 ALA212 LEU213 ARG214 ALA215 THR216 LYS217 LYS218 VAL219 LYS220 ARG221 GLY222 LEU223 GLY224 THR225 ILE226 ARG227 GLN228 ASP229 LEU230 ASN231 VAL232 SER233 ILE234 LYS235 GLY236 GLY237 ALA238 ARG239 ILE240 GLU241 ILE242 LYS243 GLY244 VAL245 GLN246 GLU247 LEU248 ASP249 MET250 ILE251 PRO252 ILE253 ILE254 ILE255 GLU256 ARG257 GLU258 VAL259 GLU260 ARG261 GLN262 LEU263 ASN264 LEU265 LEU266 LYS267 ILE268 ARG269 ASP270 GLU271 LEU272 ARG273 LYS274 ARG275 GLY276 VAL277 LYS278 PRO279 LYS280 ASP281 ILE282 LYS283 GLU284 GLU285 PHE286 TYR287 ASP288 VAL289 THR290 ASP291 ILE292 PHE293 GLU294 ASN295 THR296 LYS297 SER298 LYS299 ILE300 ILE301 ALA302 ARG303 VAL304 ILE305 LYS306 LYS307 GLY308 GLY309 LYS310 VAL311 LEU312 ALA313 ILE314 LYS315 LEU316 PRO317 LYS318 PHE319 ARG320 GLY321 LEU322 ILE323 GLY324 ARG325 GLU326 ILE327 GLN328 PRO329 GLY330 ARG331 ARG332 LEU333 GLY334 THR335 GLU336 PHE337 ALA338 ASP339 ARG340 ALA341 LYS342 LYS343 TYR344 VAL345 PRO346 GLY347 ILE348 PHE349 HIS350 ILE351 ASP352 GLU353 LEU354 PRO355 ASN356 TYR357 GLY358 ILE359 SER360 GLN361 GLU362 GLU363 VAL364 ASN365 LYS366 VAL367 ILE368 GLU369 ARG370 LEU371 ASN372 LEU373 SER374 GLU375 GLU376 ASP377 ALA378 PHE379 VAL380 LEU381 VAL382 ALA383 ALA384 GLU385 GLU386 GLU387 LYS388 ALA389 LYS390 ASN391 ALA392 LEU393 ARG394 GLU395 VAL396 ILE397 LYS398 ARG399 ALA400 ARG401 GLU402 ALA403 ILE404 GLU405 GLY406 VAL407 PRO408 GLU409 GLU410 THR411 ARG412 ARG413 ALA414 LEU415 PRO416 ASP417 GLY418 ASN419 THR420 GLU421 TYR422 MET423 ARG424 PRO425 LEU426 PRO427 GLY428 LYS429 ALA430 ARG431 MET432 TYR433 PRO434 GLU435 THR436 ASP437 ILE438 PRO439 PRO440 LEU441 ARG442 ILE443 PRO444 ASP445 ASP446 LEU447 LYS448 LYS449 LYS450 ILE451 LYS452 GLU453 ASN454 LEU455 PRO456 GLU457 LEU458 PRO459 GLN460 ALA461 LYS462 VAL463 GLU464 ARG465 TYR466 VAL467 LYS468 GLU469 TYR470 LYS471 LEU472 ASP473 ARG474 SER475 LEU476 ALA477 GLN478 THR479 LEU480 VAL481 ASP482 ASP483 GLU484 ARG485 ASP486 GLU487 LEU488 PHE489 GLU490 GLU491 LEU492 VAL493 SER494 MET495 GLY496 VAL497 LYS498 PRO499 SER500 LEU501 ALA502 ALA503 SER504 ILE505 LEU506 VAL507 VAL508 VAL509 LEU510 LYS511 GLY512
Unit 4 THR5 ASP6 LYS7 PHE8 ASN9 TYR10 GLU11 GLU12 LEU13 GLY14 LEU15 LYS16 VAL17 GLY18 LEU19 GLU20 ILE21 HIS22 ARG23 GLN24 LEU25 ASP26 THR27 LYS28 LYS29 LEU30 PHE31 SER32 PRO33 VAL34 PRO35 SER36 GLU37 LEU38 SER39 ASP40 LYS41 VAL42 GLU43 PHE44 THR45 PHE46 GLN47 ARG48 ARG49 LEU50 ARG51 PRO52 THR53 MET54 SER55 GLU56 LEU57 GLY58 GLU59 ILE60 ASP61 PRO62 ALA63 ALA64 LEU65 GLU66 GLU67 PHE68 LYS69 LYS70 GLY71 ARG72 VAL73 TYR74 VAL75 TYR76 GLU77 GLY78 ASN79 TYR80 GLU81 LEU82 THR83 ASP84 LEU85 VAL86 TYR87 MET88 ASP89 GLU90 GLU91 PRO92 PRO93 ARG94 GLY95 PRO96 ASP97 ARG98 GLU99 ALA100 LEU101 GLU102 VAL103 ALA104 LEU105 GLN106 ILE107 ALA108 TYR109 LEU110 LEU111 ASN112 ALA113 LYS114 PRO115 VAL116 ASP117 GLU118 VAL119 TYR120 TYR121 MET122 ARG123 LYS124 ILE125 VAL126 ILE127 ASP128 GLY129 SER130 ASN131 VAL132 SER133 GLY134 PHE135 GLN136 ARG137 THR138 ALA139 ILE140 ILE141 ALA142 THR143 ASP144 GLY145 LYS146 VAL147 GLU148 THR149 PRO150 TRP151 GLY152 ALA153 VAL154 GLY155 ILE156 PRO157 THR158 ILE159 CYS160 LEU161 GLU162 GLU163 ASP164 ALA165 ALA166 ARG167 ILE168 ILE169 GLU170 ARG171 LYS172 ASP173 LYS174 GLU175 VAL176 ILE177 TYR178 ARG179 LEU180 ASP181 ARG182 LEU183 GLY184 ILE185 PRO186 LEU187 ILE188 GLU189 ILE190 SER191 THR192 THR193 PRO194 ASP195 ILE196 HIS197 HIS198 PRO199 GLU200 GLN201 ALA202 LYS203 VAL204 VAL205 ALA206 LYS207 PHE208 ILE209 GLY210 ASP211 ALA212 LEU213 ARG214 ALA215 THR216 LYS217 LYS218 VAL219 LYS220 ARG221 GLY222 LEU223 GLY224 THR225 ILE226 ARG227 GLN228 ASP229 LEU230 ASN231 VAL232 SER233 ILE234 LYS235 GLY236 GLY237 ALA238 ARG239 ILE240 GLU241 ILE242 LYS243 GLY244 VAL245 GLN246 GLU247 LEU248 ASP249 MET250 ILE251 PRO252 ILE253 ILE254 ILE255 GLU256 ARG257 GLU258 VAL259 GLU260 ARG261 GLN262 LEU263 ASN264 LEU265 LEU266 LYS267 ILE268 ARG269 ASP270 GLU271 LEU272 ARG273 LYS274 ARG275 GLY276 VAL277 LYS278 PRO279 LYS280 ASP281 ILE282 LYS283 GLU284 GLU285 PHE286 TYR287 ASP288 VAL289 THR290 ASP291 ILE292 PHE293 GLU294 ASN295 THR296 LYS297 SER298 LYS299 ILE300 ILE301 ALA302 ARG303 VAL304 ILE305 LYS306 LYS307 GLY308 GLY309 LYS310 VAL311 LEU312 ALA313 ILE314 LYS315 LEU316 PRO317 LYS318 PHE319 ARG320 GLY321 LEU322 ILE323 GLY324 ARG325 GLU326 ILE327 GLN328 PRO329 GLY330 ARG331 ARG332 LEU333 GLY334 THR335 GLU336 PHE337 ALA338 ASP339 ARG340 ALA341 LYS342 LYS343 TYR344 VAL345 PRO346 GLY347 ILE348 PHE349 HIS350 ILE351 ASP352 GLU353 LEU354 PRO355 ASN356 TYR357 GLY358 ILE359 SER360 GLN361 GLU362 GLU363 VAL364 ASN365 LYS366 VAL367 ILE368 GLU369 ARG370 LEU371 ASN372 LEU373 SER374 GLU375 GLU376 ASP377 ALA378 PHE379 VAL380 LEU381 VAL382 ALA383 ALA384 GLU385 GLU386 GLU387 LYS388 ALA389 LYS390 ASN391 ALA392 LEU393 ARG394 GLU395 VAL396 ILE397 LYS398 ARG399 ALA400 ARG401 GLU402 ALA403 ILE404 GLU405 GLY406 VAL407 PRO408 GLU409 GLU410 THR411 ARG412 ARG413 ALA414 LEU415 PRO416 ASP417 GLY418 ASN419 THR420 GLU421 TYR422 MET423 ARG424 PRO425 LEU426 PRO427 GLY428 LYS429 ALA430 ARG431 MET432 TYR433 PRO434 GLU435 THR436 ASP437 ILE438 PRO439 PRO440 LEU441 ARG442 ILE443 PRO444 ASP445 ASP446 LEU447 LYS448 LYS449 LYS450 ILE451 LYS452 GLU453 ASN454 LEU455 PRO456 GLU457 LEU458 PRO459 GLN460 ALA461 LYS462 VAL463 GLU464 ARG465 TYR466 VAL467 LYS468 GLU469 TYR470 LYS471 LEU472 ASP473 ARG474 SER475 LEU476 ALA477 GLN478 THR479 LEU480 VAL481 ASP482 ASP483 GLU484 ARG485 ASP486 GLU487 LEU488 PHE489 GLU490 GLU491 LEU492 VAL493 SER494 MET495 GLY496 VAL497 LYS498 PRO499 SER500 LEU501 ALA502 ALA503 SER504 ILE505 LEU506 VAL507 VAL508 VAL509 LEU510 LYS511 GLY512
Unit 5 ASP1000
Unit 6 ASP5000

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany