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(-) Description

Title :  CO-CRYSTAL STRUCTURE OF ORF2 AN AROMATIC PRENYL TRANSFERASE FROM STREPTOMYCES SP. STRAIN CL190 COMPLEXED WITH TAPS
 
Authors :  T. Kuzuyama, J. P. Noel, S. B. Richard
Date :  15 Apr 05  (Deposition) - 21 Jun 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.44
Chains :  Asym./Biol. Unit :  A
Keywords :  Novel Aromatic Prenyltransferase Barrel Fold, Pt-Barrel, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Kuzuyama, J. P. Noel, S. B. Richard
Structural Basis For The Promiscuous Biosynthetic Prenylation Of Aromatic Natural Products.
Nature V. 435 983 2005
PubMed-ID: 15959519  |  Reference-DOI: 10.1038/NATURE03668

(-) Compounds

Molecule 1 - AROMATIC PRENYLTRANSFERASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PHIS8
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Organism Scientific: STREPTOMYCES SP.
    Organism Taxid: 93372
    Strain: CL190

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1T3A1Ligand/IonN-(TRIS(HYDROXYMETHYL)METHYL)-3-AMINOPROPANESULFONICACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:53 , ARG A:56 , HIS A:57 , ASP A:62 , LYS A:119 , LYS A:169 , ARG A:228 , TYR A:282 , LYS A:284 , HOH A:653 , HOH A:664 , HOH A:675 , HOH A:698 , HOH A:803BINDING SITE FOR RESIDUE T3A A 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ZDY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1ZDY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ZDY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1ZDY)

(-) Exons   (0, 0)

(no "Exon" information available for 1ZDY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:301
 aligned with Q4R2T2_STRC1 | Q4R2T2 from UniProtKB/TrEMBL  Length:307

    Alignment length:301
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302 
         Q4R2T2_STRC1     3 EAADVERVYAAMEEAAGLLGVACARDKIYPLLSTFQDTLVEGGSVVVFSMASGRHSTELDFSISVPTSHGDPYATVVEKGLFPATGHPVDDLLADTQKHLPVSMFAIDGEVTGGFKKTYAFFPTDNMPGVAELSAIPSMPPAVAENAELFARYGLDKVQMTSMDYKKRQVNLYFSELSAQTLEAESVLALVRELGLHVPNELGLKFCKRSFSVYPTLNWETGKIDRLCFAVISNDPTLVPSSDEGDIEKFHNYATKAPYAYVGEKRTLVYGLTLSPKEEYYKLGAYYHITDVQRGLLKAFD 303
               SCOP domains d1zdya_ A: Aromatic prenyltransferase                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --PTase_Orf2-1zdyA01 A:5-303                                                                                                                                                                                                                                                                                  Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh......eeeeee.hhhh...eeeeeehhhhhhhhhhhhhh........hhhhhhhhhhhhh...eeeeeee...eeeeeeee.......hhhhhhh....hhhhhhhhhhhhhh....eeeeeee....eeeeee...hhhhhhhhhhhhhhhhhh....hhhhhhhhhhh.eeeeeee.......eeeeeeee.........hhhhhhhhhhhhhhh..........eeeeeee....eeeeeeeeee.hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zdy A   3 EAADVERVYAAMEEAAGLLGVACARDKIYPLLSTFQDTLVEGGSVVVFSMASGRHSTELDFSISVPTSHGDPYATVVEKGLFPATGHPVDDLLADTQKHLPVSMFAIDGEVTGGFKKTYAFFPTDNMPGVAELSAIPSMPPAVAENAELFARYGLDKVQMTSMDYKKRQVNLYFSELSAQTLEAESVLALVRELGLHVPNELGLKFCKRSFSVYPTLNWETGKIDRLCFAVISNDPTLVPSSDEGDIEKFHNYATKAPYAYVGEKRTLVYGLTLSPKEEYYKLGAYYHITDVQRGLLKAFD 303
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1ZDY)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: PTase_Orf2] (4)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q4R2T2_STRC1 | Q4R2T2)
molecular function
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

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  1zdy
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q4R2T2_STRC1 | Q4R2T2: 1zb6 1zcw 1zdw

(-) Related Entries Specified in the PDB File

1zb6 CO-CRYSTAL STRUCTURE OF ORF2 AN AROMATIC PRENYL TRANSFERASE FROM STREPTOMYCES SP. STRAIN CL190 COMPLEXED WITH GSPP AND 1,6-DIHYDROXYNAPHTALENE
1zcw CO-CRYSTAL STRUCTURE OF ORF2 AN AROMATIC PRENYL TRANSFERASE FROM STREPTOMYCES SP. STRAIN CL190 COMPLEXED WITH GPP
1zdw CO-CRYSTAL STRUCTURE OF ORF2 AN AROMATIC PRENYL TRANSFERASE FROM STREPTOMYCES SP. STRAIN CL190 COMPLEXED WITH GSPP AND FLAVIOLIN