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(-) Description

Title :  CO-CRYSTAL STRUCTURE OF ORF2 AN AROMATIC PRENYL TRANSFERASE FROM STREPTOMYCES SP. STRAIN CL190 COMPLEXED WITH GPP
 
Authors :  T. Kuzuyama, J. P. Noel, S. B. Richard
Date :  13 Apr 05  (Deposition) - 21 Jun 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym./Biol. Unit :  A
Keywords :  Novel Aromatic Prenyltransferase Barrel Fold, Pt-Barrel, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Kuzuyama, J. P. Noel, S. B. Richard
Structural Basis For The Promiscuous Biosynthetic Prenylation Of Aromatic Natural Products.
Nature V. 435 983 2005
PubMed-ID: 15959519  |  Reference-DOI: 10.1038/NATURE03668

(-) Compounds

Molecule 1 - AROMATIC PRENYLTRANSFERASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PHIS8
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Organism Scientific: STREPTOMYCES SP.
    Organism Taxid: 93372
    Strain: CL190

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
1GPP1Ligand/IonGERANYL DIPHOSPHATE
2MG1Ligand/IonMAGNESIUM ION
3NO32Ligand/IonNITRATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:62 , GPP A:401 , HOH A:665 , HOH A:666BINDING SITE FOR RESIDUE MG A 501
2AC2SOFTWAREGLY A:44 , GLY A:45 , THR A:292 , ASP A:293 , HOH A:656BINDING SITE FOR RESIDUE NO3 A 601
3AC3SOFTWARELYS A:207 , PHE A:208 , ARG A:211 , LEU A:240 , HOH A:646BINDING SITE FOR RESIDUE NO3 A 602
4AC4SOFTWAREVAL A:47 , LYS A:119 , TYR A:121 , PHE A:123 , ASN A:173 , TYR A:175 , TYR A:216 , ARG A:228 , LYS A:284 , MG A:501 , HOH A:623 , HOH A:636 , HOH A:645 , HOH A:666 , HOH A:683BINDING SITE FOR RESIDUE GPP A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ZCW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1ZCW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ZCW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1ZCW)

(-) Exons   (0, 0)

(no "Exon" information available for 1ZCW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:302
 aligned with Q4R2T2_STRC1 | Q4R2T2 from UniProtKB/TrEMBL  Length:307

    Alignment length:302
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302  
         Q4R2T2_STRC1     3 EAADVERVYAAMEEAAGLLGVACARDKIYPLLSTFQDTLVEGGSVVVFSMASGRHSTELDFSISVPTSHGDPYATVVEKGLFPATGHPVDDLLADTQKHLPVSMFAIDGEVTGGFKKTYAFFPTDNMPGVAELSAIPSMPPAVAENAELFARYGLDKVQMTSMDYKKRQVNLYFSELSAQTLEAESVLALVRELGLHVPNELGLKFCKRSFSVYPTLNWETGKIDRLCFAVISNDPTLVPSSDEGDIEKFHNYATKAPYAYVGEKRTLVYGLTLSPKEEYYKLGAYYHITDVQRGLLKAFDS 304
               SCOP domains d1zcwa_ A: Aromatic prenyltransferase                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --PTase_Orf2-1zcwA01 A:5-304                                                                                                                                                                                                                                                                                   Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.....eeeeee.hhhh...eeeeeehhhhhhhhhhhhhh........hhhhhhhhhhhhh...eeeeeee...eeeeeeee.hhhhh.hhhhhhh.....hhhhhhhhhhhhh....eeeeeee....eeeeee........hhhhhhhhhhhhh....hhhhhhhhhh..eeeeeee.......eeeeeeee.........hhhhhhhhhhhhhhh..........eeeeeeee..eeeeeeeeeee.hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zcw A   3 EAADVERVYAAMEEAAGLLGVACARDKIYPLLSTFQDTLVEGGSVVVFSMASGRHSTELDFSISVPTSHGDPYATVVEKGLFPATGHPVDDLLADTQKHLPVSMFAIDGEVTGGFKKTYAFFPTDNMPGVAELSAIPSMPPAVAENAELFARYGLDKVQMTSMDYKKRQVNLYFSELSAQTLEAESVLALVRELGLHVPNELGLKFCKRSFSVYPTLNWETGKIDRLCFAVISNDPTLVPSSDEGDIEKFHNYATKAPYAYVGEKRTLVYGLTLSPKEEYYKLGAYYHITDVQRGLLKAFDS 304
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1ZCW)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: PTase_Orf2] (4)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q4R2T2_STRC1 | Q4R2T2)
molecular function
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q4R2T2_STRC1 | Q4R2T2: 1zb6 1zdw 1zdy

(-) Related Entries Specified in the PDB File

1zb6 CO-CRYSTAL STRUCTURE OF ORF2 AN AROMATIC PRENYL TRANSFERASE FROM STREPTOMYCES SP. STRAIN CL190 COMPLEXED WITH GSPP AND 1,6-DIHYDROXYNAPHTALENE
1zdw CO-CRYSTAL STRUCTURE OF ORF2 AN AROMATIC PRENYL TRANSFERASE FROM STREPTOMYCES SP. STRAIN CL190 COMPLEXED WITH GSPP AND FLAVIOLIN
1zdy CO-CRYSTAL STRUCTURE OF ORF2 AN AROMATIC PRENYL TRANSFERASE FROM STREPTOMYCES SP. STRAIN CL190 COMPLEXED WITH TAPS