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(-) Description

Title :  CO-CRYSTAL STRUCTURE OF ORF2 AN AROMATIC PRENYL TRANSFERASE FROM STREPTOMYCES SP. STRAIN CL190 COMPLEXED WITH GSPP AND 1,6-DIHYDROXYNAPHTALENE
 
Authors :  T. Kuzuyama, J. P. Noel, S. B. Richard
Date :  07 Apr 05  (Deposition) - 21 Jun 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym./Biol. Unit :  A
Keywords :  Novel Aromatic Prenyltransferase Barrel Fold, Pt-Barrel (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. Kuzuyama, J. P. Noel, S. B. Richard
Structural Basis For The Promiscuous Biosynthetic Prenylation Of Aromatic Natural Products.
Nature V. 435 983 2005
PubMed-ID: 15959519  |  Reference-DOI: 10.1038/NATURE03668
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - AROMATIC PRENYLTRANSFERASE
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21
    Expression System PlasmidPHIS8
    Expression System StrainBL21
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    GeneAB187169
    Organism ScientificSTREPTOMYCES SP.
    Organism Taxid1931
    StrainSTRAIN CL190

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 4)

Asymmetric/Biological Unit (4, 4)
No.NameCountTypeFull Name
1DIN1Ligand/Ion1,6-DIHYDROXY NAPHTHALENE
2GST1Ligand/IonGERANYL S-THIOLODIPHOSPHATE
3MG1Ligand/IonMAGNESIUM ION
4NO31Ligand/IonNITRATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:62 , GST A:502 , HOH A:595 , HOH A:598 , HOH A:611BINDING SITE FOR RESIDUE MG A 308
2AC2SOFTWAREASN A:128 , MET A:129 , GLU A:134 , GLN A:182BINDING SITE FOR RESIDUE NO3 A 501
3AC3SOFTWAREVAL A:47 , SER A:64 , LYS A:119 , TYR A:121 , PHE A:123 , ASN A:173 , TYR A:175 , TYR A:216 , ARG A:228 , LYS A:284 , MG A:308 , DIN A:401 , HOH A:509 , HOH A:574 , HOH A:592 , HOH A:595 , HOH A:660BINDING SITE FOR RESIDUE GST A 502
4AC4SOFTWARETYR A:175 , SER A:214 , VAL A:271 , TYR A:288 , GST A:502 , HOH A:565 , HOH A:579 , HOH A:678BINDING SITE FOR RESIDUE DIN A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ZB6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1ZB6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ZB6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1ZB6)

(-) Exons   (0, 0)

(no "Exon" information available for 1ZB6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:301
 aligned with Q4R2T2_STRC1 | Q4R2T2 from UniProtKB/TrEMBL  Length:307

    Alignment length:301
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302 
         Q4R2T2_STRC1     3 EAADVERVYAAMEEAAGLLGVACARDKIYPLLSTFQDTLVEGGSVVVFSMASGRHSTELDFSISVPTSHGDPYATVVEKGLFPATGHPVDDLLADTQKHLPVSMFAIDGEVTGGFKKTYAFFPTDNMPGVAELSAIPSMPPAVAENAELFARYGLDKVQMTSMDYKKRQVNLYFSELSAQTLEAESVLALVRELGLHVPNELGLKFCKRSFSVYPTLNWETGKIDRLCFAVISNDPTLVPSSDEGDIEKFHNYATKAPYAYVGEKRTLVYGLTLSPKEEYYKLGAYYHITDVQRGLLKAFD 303
               SCOP domains d1zb6a1 A:3-303 Aromatic prenyltransferase                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --PTase_Orf2-1zb6A01 A:5-303                                                                                                                                                                                                                                                                                  Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh......eeeeee.hhhh...eeeeeehhhhhhhhhhhhhh........hhhhhhhhhhhhh...eeeeeee...eeeeeeee.......hhhhhhh.....hhhhhhhhhhhhh....eeeeeee....eeeeee........hhhhhhhhhhhhh....hhhhhhhhhh..eeeeeee.......eeeeeeee.........hhhhhhhhhhhhhhh..........eeeeeee....eeeeeeeeee.hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zb6 A   3 EAADVERVYAAMEEAAGLLGVACARDKIYPLLSTFQDTLVEGGSVVVFSMASGRHSTELDFSISVPTSHGDPYATVVEKGLFPATGHPVDDLLADTQKHLPVSMFAIDGEVTGGFKKTYAFFPTDNMPGVAELSAIPSMPPAVAENAELFARYGLDKVQMTSMDYKKRQVNLYFSELSAQTLEAESVLALVRELGLHVPNELGLKFCKRSFSVYPTLNWETGKIDRLCFAVISNDPTLVPSSDEGDIEKFHNYATKAPYAYVGEKRTLVYGLTLSPKEEYYKLGAYYHITDVQRGLLKAFD 303
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302 

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1ZB6)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q4R2T2_STRC1 | Q4R2T2)
molecular function
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q4R2T2_STRC1 | Q4R2T21zcw 1zdw 1zdy

(-) Related Entries Specified in the PDB File

1zcw 1zdw 1zdy