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Title :   CO-CRYSTAL STRUCTURE OF ORF2 AN AROMATIC PRENYL TRANSFERASE FROM STREPTOMYCES SP. STRAIN CL190 COMPLEXED WITH GSPP AND 1,6-DIHYDROXYNAPHTALENE

Authors :   T. Kuzuyama, J. P. Noel, S. B. Richard

Date :   07 Apr 05 (Deposition) - 21 Jun 05 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.95

Chains :   Asym./Biol. Unit : A

Keywords :   Novel Aromatic Prenyltransferase Barrel Fold, Pt-Barrel (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. Kuzuyama, J. P. Noel, S. B. Richard
Structural Basis For The Promiscuous Biosynthetic Prenylation Of Aromatic Natural Products.
Nature V. 435 983 2005
PubMed-ID: 15959519 | Reference-DOI: 10.1038/NATURE03668
(for further references see the PDB file header)

Molecule 1 - AROMATIC PRENYLTRANSFERASE
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21
	Expression System Plasmid	:	PHIS8
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Gene	:	AB187169
	Organism Scientific	:	STREPTOMYCES SP.
	Organism Taxid	:	1931
	Strain	:	STRAIN CL190

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (4, 4)

No.	Name	Count	Type	Full Name
1	DIN	1	Ligand/Ion	1,6-DIHYDROXY NAPHTHALENE
2	GST	1	Ligand/Ion	GERANYL S-THIOLODIPHOSPHATE
3	MG	1	Ligand/Ion	MAGNESIUM ION
4	NO3	1	Ligand/Ion	NITRATE ION

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:62 , GST A:502 , HOH A:595 , HOH A:598 , HOH A:611	BINDING SITE FOR RESIDUE MG A 308
2	AC2	SOFTWARE	ASN A:128 , MET A:129 , GLU A:134 , GLN A:182	BINDING SITE FOR RESIDUE NO3 A 501
3	AC3	SOFTWARE	VAL A:47 , SER A:64 , LYS A:119 , TYR A:121 , PHE A:123 , ASN A:173 , TYR A:175 , TYR A:216 , ARG A:228 , LYS A:284 , MG A:308 , DIN A:401 , HOH A:509 , HOH A:574 , HOH A:592 , HOH A:595 , HOH A:660	BINDING SITE FOR RESIDUE GST A 502
4	AC4	SOFTWARE	TYR A:175 , SER A:214 , VAL A:271 , TYR A:288 , GST A:502 , HOH A:565 , HOH A:579 , HOH A:678	BINDING SITE FOR RESIDUE DIN A 401

(no "SS Bond" information available for 1ZB6)

(no "Cis Peptide Bond" information available for 1ZB6)

(no "SAP(SNP)/Variant" information available for 1ZB6)

(no "PROSITE Motif" information available for 1ZB6)

(no "Exon" information available for 1ZB6)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:301
 aligned with Q4R2T2_STRC1 | Q4R2T2 from UniProtKB/TrEMBL  Length:307

    Alignment length:301
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302 
         Q4R2T2_STRC1     3 EAADVERVYAAMEEAAGLLGVACARDKIYPLLSTFQDTLVEGGSVVVFSMASGRHSTELDFSISVPTSHGDPYATVVEKGLFPATGHPVDDLLADTQKHLPVSMFAIDGEVTGGFKKTYAFFPTDNMPGVAELSAIPSMPPAVAENAELFARYGLDKVQMTSMDYKKRQVNLYFSELSAQTLEAESVLALVRELGLHVPNELGLKFCKRSFSVYPTLNWETGKIDRLCFAVISNDPTLVPSSDEGDIEKFHNYATKAPYAYVGEKRTLVYGLTLSPKEEYYKLGAYYHITDVQRGLLKAFD 303
               SCOP domains d1zb6a1 A:3-303 Aromatic prenyltransferase                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --PTase_Orf2-1zb6A01 A:5-303                                                                                                                                                                                                                                                                                  Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh......eeeeee.hhhh...eeeeeehhhhhhhhhhhhhh........hhhhhhhhhhhhh...eeeeeee...eeeeeeee.......hhhhhhh.....hhhhhhhhhhhhh....eeeeeee....eeeeee........hhhhhhhhhhhhh....hhhhhhhhhh..eeeeeee.......eeeeeeee.........hhhhhhhhhhhhhhh..........eeeeeee....eeeeeeeeee.hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zb6 A   3 EAADVERVYAAMEEAAGLLGVACARDKIYPLLSTFQDTLVEGGSVVVFSMASGRHSTELDFSISVPTSHGDPYATVVEKGLFPATGHPVDDLLADTQKHLPVSMFAIDGEVTGGFKKTYAFFPTDNMPGVAELSAIPSMPPAVAENAELFARYGLDKVQMTSMDYKKRQVNLYFSELSAQTLEAESVLALVRELGLHVPNELGLKFCKRSFSVYPTLNWETGKIDRLCFAVISNDPTLVPSSDEGDIEKFHNYATKAPYAYVGEKRTLVYGLTLSPKEEYYKLGAYYHITDVQRGLLKAFD 303
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

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Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

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Class: Alpha and beta proteins (a+b) (23004)

Fold: Antiparallel beta/alpha barrel (PT-barrel) (7)

Superfamily: Prenyltransferase-like (7)

Family: Prenyltransferase-like (4)

Protein domain: Aromatic prenyltransferase (4)

Streptomyces sp. CL190 [TaxId: 93372] (4)

d1zb6a1

A:3-303

(no "CATH Domain" information available for 1ZB6)

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: PTase_Orf2] (4)

Family: PTase_Orf2 (4)

Streptomyces sp. (strain CL190) (4)

PTase_Orf2-1zb6A01

A:5-303

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (Q4R2T2_STRC1 | Q4R2T2)

molecular function
	GO:0016740		transferase activity		Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

Asymmetric/Biological Unit
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(no "Cis Peptide Bonds" information available for 1zb6)

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	Q4R2T2_STRC1 \| Q4R2T2	:	1zcw 1zdw 1zdy

Description

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Ligands, Modified Residues, Ions (4, 4)

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SS Bonds (0, 0)

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