Chain A from PDB Type:PROTEIN Length:162
aligned with Q00P86_RANTA | Q00P86 from UniProtKB/TrEMBL Length:180
Alignment length:162
28 38 48 58 68 78 88 98 108 118 128 138 148 158 168 178
Q00P86_RANTA 19 IIVTQTMKDLDVQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPGGDLEILLQKWENGKCAQKKIIAEKTEIPAVFKIDALNENKVLVLDTDYKKYLLFCMENSAEPEQSLACQCLVRTPEVDDEAMEKFDKALKALPMHIRLSFNPTQLEEQCRV 180
SCOP domains d1yupa1 A:1-162 beta-Lactoglobulin SCOP domains
CATH domains 1yupA00 A:1-162 [code=2.40.128.20, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ..........hhhhhhee.eeeeeee.hhhhhh........eeeeeee.....eeeeeeee....eeeeeeeeee.....eee.......eeeeeee....eeeeeee.........eeeeee.....hhhhhhhhhhhhh.....eeee.hhhhhhh.... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1yup A 1 IIVTQTMKDLDVQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPGGDLEILLQKWENGKCAQKKIIAEKTEIPAVFKIDALNENKVLVLDTDYKKYLLFCMENSAEPEQSLACQCLVRTPEVDDEAMEKFDKALKALPMHIRLSFNPTQLEEQCRV 162
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160
Chain B from PDB Type:PROTEIN Length:158
aligned with Q00P86_RANTA | Q00P86 from UniProtKB/TrEMBL Length:180
Alignment length:158
30 40 50 60 70 80 90 100 110 120 130 140 150 160 170
Q00P86_RANTA 21 VTQTMKDLDVQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPGGDLEILLQKWENGKCAQKKIIAEKTEIPAVFKIDALNENKVLVLDTDYKKYLLFCMENSAEPEQSLACQCLVRTPEVDDEAMEKFDKALKALPMHIRLSFNPTQLEEQC 178
SCOP domains d1yupb_ B: automated matches SCOP domains
CATH domains 1yupB00 B:3-160 [code=2.40.128.20, no name defined] CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..............ee.eeeeeee.hhhhhh........eeeeeee.....eeeeeeee....eeeeeeee.......eeeeee..eeeeeeeee....eeeeeee...hhhhhheeeeee.....hhhhhhhhhhhhhh....eeee.hhhhhhh.. Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1yup B 3 VTQTMKDLDVQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPGGDLEILLQKWENGKCAQKKIIAEKTEIPAVFKIDALNENKVLVLDTDYKKYLLFCMENSAEPEQSLACQCLVRTPEVDDEAMEKFDKALKALPMHIRLSFNPTQLEEQC 160
12 22 32 42 52 62 72 82 92 102 112 122 132 142 152
Chain C from PDB Type:PROTEIN Length:160
aligned with Q00P86_RANTA | Q00P86 from UniProtKB/TrEMBL Length:180
Alignment length:160
30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180
Q00P86_RANTA 21 VTQTMKDLDVQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPGGDLEILLQKWENGKCAQKKIIAEKTEIPAVFKIDALNENKVLVLDTDYKKYLLFCMENSAEPEQSLACQCLVRTPEVDDEAMEKFDKALKALPMHIRLSFNPTQLEEQCRV 180
SCOP domains d1yupc_ C: automated matches SCOP domains
CATH domains 1yupC00 C:3-162 [code=2.40.128.20, no name defined] CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ........hhhhhhee.eeeeeee.hhhhh.........eeeeeee.....eeeeeeeee..eeeeeeeeeee.....eeeeee..eeeeeeeee....eeeeeee.........eeeeee.....hhhhhhhhhhhhh.....eeee.hhhhhhh.... Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1yup C 3 VTQTMKDLDVQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPGGDLEILLQKWENGKCAQKKIIAEKTEIPAVFKIDALNENKVLVLDTDYKKYLLFCMENSAEPEQSLACQCLVRTPEVDDEAMEKFDKALKALPMHIRLSFNPTQLEEQCRV 162
12 22 32 42 52 62 72 82 92 102 112 122 132 142 152 162
Chain D from PDB Type:PROTEIN Length:158
aligned with LACB_BOVIN | P02754 from UniProtKB/Swiss-Prot Length:178
Alignment length:158
28 38 48 58 68 78 88 98 108 118 128 138 148 158 168
LACB_BOVIN 19 VTQTMKGLDIQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPEGDLEILLQKWENGECAQKKIIAEKTKIPAVFKIDALNENKVLVLDTDYKKYLLFCMENSAEPEQSLACQCLVRTPEVDDEALEKFDKALKALPMHIRLSFNPTQLEEQC 176
SCOP domains d1yupd_ D: automated matches SCOP domains
CATH domains 1yupD00 D:3-160 [code=2.40.128.20, no name defined] CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ........hhhhhhee.eeeeeee.hhhhh.........eeeeeee.....eeeeeeee....eeeeeeeeee.....eeeeee..eeeeeeeee....eeeeeee...hhhhh.eeeeee.....hhhhhhhhhhhhhh....eeee.hhhhhhh.. Sec.struct. author
SAPs(SNPs) ------------------------------------------Q----------L--H----D-----------------------------------------------------V------------------------------------------ SAPs(SNPs)
PROSITE ------LIPOCALIN ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1yup D 3 VTQTMKDLDVQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPGGDLEILLQKWENGKCAQKKIIAEKTEIPAVFKIDALNENKVLVLDTDYKKYLLFCMENSAEPEQSLACQCLVRTPEVDDEAMEKFDKALKALPMHIRLSFNPTQLEEQC 160
12 22 32 42 52 62 72 82 92 102 112 122 132 142 152
Chain D from PDB Type:PROTEIN Length:158
aligned with Q00P86_RANTA | Q00P86 from UniProtKB/TrEMBL Length:180
Alignment length:158
30 40 50 60 70 80 90 100 110 120 130 140 150 160 170
Q00P86_RANTA 21 VTQTMKDLDVQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPGGDLEILLQKWENGKCAQKKIIAEKTEIPAVFKIDALNENKVLVLDTDYKKYLLFCMENSAEPEQSLACQCLVRTPEVDDEAMEKFDKALKALPMHIRLSFNPTQLEEQC 178
SCOP domains d1yupd_ D: automated matches SCOP domains
CATH domains 1yupD00 D:3-160 [code=2.40.128.20, no name defined] CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ........hhhhhhee.eeeeeee.hhhhh.........eeeeeee.....eeeeeeee....eeeeeeeeee.....eeeeee..eeeeeeeee....eeeeeee...hhhhh.eeeeee.....hhhhhhhhhhhhhh....eeee.hhhhhhh.. Sec.struct. author
SAPs(SNPs) ------------------------------------------Q----------L--H----D-----------------------------------------------------V------------------------------------------ SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1yup D 3 VTQTMKDLDVQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPGGDLEILLQKWENGKCAQKKIIAEKTEIPAVFKIDALNENKVLVLDTDYKKYLLFCMENSAEPEQSLACQCLVRTPEVDDEAMEKFDKALKALPMHIRLSFNPTQLEEQC 160
12 22 32 42 52 62 72 82 92 102 112 122 132 142 152
Chain E from PDB Type:PROTEIN Length:154
aligned with Q00P86_RANTA | Q00P86 from UniProtKB/TrEMBL Length:180
Alignment length:154
36 46 56 66 76 86 96 106 116 126 136 146 156 166 176
Q00P86_RANTA 27 DLDVQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPGGDLEILLQKWENGKCAQKKIIAEKTEIPAVFKIDALNENKVLVLDTDYKKYLLFCMENSAEPEQSLACQCLVRTPEVDDEAMEKFDKALKALPMHIRLSFNPTQLEEQCRV 180
SCOP domains d1yupe_ E: beta-Lactoglobulin SCOP domains
CATH domains 1yupE00 E:9-162 [code=2.40.128.20, no name defined] CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..hhhhhhee.eeeeeee.hhhhh.........eeeeeee.....eeeeeeeee..eeeeeeeeeee.....eeeeee..eeeeeeeee....eeeeeee....hhhh.eeeeee.....hhhhhhhhhhhhh.....eeee.hhhhhhh.... Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1yup E 9 DLDVQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPGGDLEILLQKWENGKCAQKKIIAEKTEIPAVFKIDALNENKVLVLDTDYKKYLLFCMENSAEPEQSLACQCLVRTPEVDDEAMEKFDKALKALPMHIRLSFNPTQLEEQCRV 162
18 28 38 48 58 68 78 88 98 108 118 128 138 148 158
Chain F from PDB Type:PROTEIN Length:159
aligned with Q00P86_RANTA | Q00P86 from UniProtKB/TrEMBL Length:180
Alignment length:159
29 39 49 59 69 79 89 99 109 119 129 139 149 159 169
Q00P86_RANTA 20 IVTQTMKDLDVQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPGGDLEILLQKWENGKCAQKKIIAEKTEIPAVFKIDALNENKVLVLDTDYKKYLLFCMENSAEPEQSLACQCLVRTPEVDDEAMEKFDKALKALPMHIRLSFNPTQLEEQC 178
SCOP domains d1yupf_ F: automated matches SCOP domains
CATH domains 1yupF00 F:2-160 [code=2.40.128.20, no name defined] CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .........hhhhhhee.eeeeeee.hhhhhh........eeeeeee.....eeeeeeee....eeeeeeeeee.....eeeeee..eeeeeeeee....eeeeeee...hhhhh.eeeeee.....hhhhhhhhhhhhhh....eeee.hhhhhhhh. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1yup F 2 IVTQTMKDLDVQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPGGDLEILLQKWENGKCAQKKIIAEKTEIPAVFKIDALNENKVLVLDTDYKKYLLFCMENSAEPEQSLACQCLVRTPEVDDEAMEKFDKALKALPMHIRLSFNPTQLEEQC 160
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151
Chain G from PDB Type:PROTEIN Length:160
aligned with Q00P86_RANTA | Q00P86 from UniProtKB/TrEMBL Length:180
Alignment length:160
30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180
Q00P86_RANTA 21 VTQTMKDLDVQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPGGDLEILLQKWENGKCAQKKIIAEKTEIPAVFKIDALNENKVLVLDTDYKKYLLFCMENSAEPEQSLACQCLVRTPEVDDEAMEKFDKALKALPMHIRLSFNPTQLEEQCRV 180
SCOP domains d1yupg_ G: automated matches SCOP domains
CATH domains 1yupG00 G:3-162 [code=2.40.128.20, no name defined] CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ........hhhhhhee.eeeeeee.hhhhh.........eeeeeee.....eeeeeeee....eeeeeeeeee.....eeeeee..eeeeeeeee....eeeeeee.........eeeeee.....hhhhhhhhhhhhhh....eeee.hhhhhhh.... Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1yup G 3 VTQTMKDLDVQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPGGDLEILLQKWENGKCAQKKIIAEKTEIPAVFKIDALNENKVLVLDTDYKKYLLFCMENSAEPEQSLACQCLVRTPEVDDEAMEKFDKALKALPMHIRLSFNPTQLEEQCRV 162
12 22 32 42 52 62 72 82 92 102 112 122 132 142 152 162
Chain H from PDB Type:PROTEIN Length:152
aligned with Q00P86_RANTA | Q00P86 from UniProtKB/TrEMBL Length:180
Alignment length:152
36 46 56 66 76 86 96 106 116 126 136 146 156 166 176
Q00P86_RANTA 27 DLDVQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPGGDLEILLQKWENGKCAQKKIIAEKTEIPAVFKIDALNENKVLVLDTDYKKYLLFCMENSAEPEQSLACQCLVRTPEVDDEAMEKFDKALKALPMHIRLSFNPTQLEEQC 178
SCOP domains d1yuph_ H: beta-Lactoglobulin SCOP domains
CATH domains 1yupH00 H:9-160 [code=2.40.128.20, no name defined] CATH domains
Pfam domains (1) -------Lipocalin-1yupH01 H:16-157 --- Pfam domains (1)
Pfam domains (2) -------Lipocalin-1yupH02 H:16-157 --- Pfam domains (2)
Pfam domains (3) -------Lipocalin-1yupH03 H:16-157 --- Pfam domains (3)
Pfam domains (4) -------Lipocalin-1yupH04 H:16-157 --- Pfam domains (4)
Pfam domains (5) -------Lipocalin-1yupH05 H:16-157 --- Pfam domains (5)
Pfam domains (6) -------Lipocalin-1yupH06 H:16-157 --- Pfam domains (6)
Pfam domains (7) -------Lipocalin-1yupH07 H:16-157 --- Pfam domains (7)
Pfam domains (8) -------Lipocalin-1yupH08 H:16-157 --- Pfam domains (8)
Sec.struct. author ..hhhhh.ee.eeeeeee.hhhhh........eeeeeeee.....eeeeeeee....eeeeeeee.......eeeeee..eeeeeeeee....eeeeeee.........eeeeee.....hhhhhhhhhhhhhhh...eeee...hhhhhh. Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1yup H 9 DLDVQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPGGDLEILLQKWENGKCAQKKIIAEKTEIPAVFKIDALNENKVLVLDTDYKKYLLFCMENSAEPEQSLACQCLVRTPEVDDEAMEKFDKALKALPMHIRLSFNPTQLEEQC 160
18 28 38 48 58 68 78 88 98 108 118 128 138 148 158
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |