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(-) Description

Title :  CRYSTAL STRUCTURE OF AGMATINASE REVEALS STRUCTURAL CONSERVATION AND INHIBITION MECHANISM OF THE UREOHYDROLASE SUPERFAMILY
 
Authors :  H. J. Ahn, K. H. Kim, J. Lee, J. -Y. Ha, H. H. Lee, D. Kim, H. -J. Yoon, A. - R. Kwon, S. W. Suh
Date :  18 Aug 04  (Deposition) - 07 Sep 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Alpha/Beta Fold, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. J. Ahn, K. H. Kim, J. Lee, J. -Y. Ha, H. H. Lee, D. Kim, H. -J. Yoon, A. -R. Kwon, S. W. Suh
Crystal Structure Of Agmatinase Reveals Structural Conservation And Inhibition Mechanism Of The Ureohydrolase Superfamily
J. Biol. Chem. V. 279 50505 2004
PubMed-ID: 15355972  |  Reference-DOI: 10.1074/JBC.M409246200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - AGMATINASE
    Chains: A, B, C, D, E, F
    EC Number: 3.5.3.11
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 18)

Asymmetric/Biological Unit (2, 18)
No.NameCountTypeFull Name
116D6Ligand/IonHEXANE-1,6-DIAMINE
2MN12Ligand/IonMANGANESE (II) ION

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:121 , ASP A:143 , ASP A:147 , ASP A:229 , 16D A:1401 , MN A:1602BINDING SITE FOR RESIDUE MN A 1601
02AC2SOFTWAREASP A:143 , HIS A:145 , ASP A:229 , ASP A:231 , 16D A:1401 , MN A:1601BINDING SITE FOR RESIDUE MN A 1602
03AC3SOFTWAREHIS B:121 , ASP B:143 , ASP B:147 , ASP B:229 , 16D B:1402 , MN B:1604BINDING SITE FOR RESIDUE MN B 1603
04AC4SOFTWAREASP B:143 , HIS B:145 , ASP B:229 , ASP B:231 , 16D B:1402 , MN B:1603BINDING SITE FOR RESIDUE MN B 1604
05AC5SOFTWAREHIS C:121 , ASP C:143 , ASP C:147 , ASP C:229 , 16D C:1403 , MN C:1606BINDING SITE FOR RESIDUE MN C 1605
06AC6SOFTWAREASP C:143 , HIS C:145 , ASP C:229 , ASP C:231 , 16D C:1403 , MN C:1605BINDING SITE FOR RESIDUE MN C 1606
07AC7SOFTWAREHIS D:121 , ASP D:143 , ASP D:147 , ASP D:229 , 16D D:1404 , MN D:1608BINDING SITE FOR RESIDUE MN D 1607
08AC8SOFTWAREASP D:143 , HIS D:145 , ASP D:229 , ASP D:231 , 16D D:1404 , MN D:1607BINDING SITE FOR RESIDUE MN D 1608
09AC9SOFTWAREHIS E:121 , ASP E:143 , ASP E:147 , ASP E:229 , 16D E:1405 , MN E:1610BINDING SITE FOR RESIDUE MN E 1609
10BC1SOFTWAREASP E:143 , HIS E:145 , ASP E:229 , ASP E:231 , 16D E:1405 , MN E:1609BINDING SITE FOR RESIDUE MN E 1610
11BC2SOFTWAREHIS F:121 , ASP F:143 , ASP F:147 , ASP F:229 , 16D F:1406 , MN F:1612BINDING SITE FOR RESIDUE MN F 1611
12BC3SOFTWAREASP F:143 , HIS F:145 , ASP F:229 , ASP F:231 , 16D F:1406 , MN F:1611BINDING SITE FOR RESIDUE MN F 1612
13BC4SOFTWAREHIS A:145 , ASP A:147 , ASN A:159 , SER A:160 , ASP A:229 , ASP A:231 , MN A:1601 , MN A:1602 , HOH A:1620 , HOH A:1672 , HOH A:1680BINDING SITE FOR RESIDUE 16D A 1401
14BC5SOFTWAREHIS B:145 , ASP B:147 , ASN B:159 , SER B:160 , ASP B:229 , ASP B:231 , MN B:1603 , MN B:1604 , HOH B:1605 , HOH B:1636 , HOH B:1723BINDING SITE FOR RESIDUE 16D B 1402
15BC6SOFTWAREHIS C:145 , ASP C:147 , ASN C:159 , SER C:160 , ASP C:229 , ASP C:231 , MN C:1605 , MN C:1606 , HOH C:1629 , HOH C:1686 , HOH C:1712BINDING SITE FOR RESIDUE 16D C 1403
16BC7SOFTWAREHIS D:145 , ASP D:147 , ASN D:159 , SER D:160 , ASP D:229 , ASP D:231 , MN D:1607 , MN D:1608 , HOH D:1611 , HOH D:1654 , HOH D:1675BINDING SITE FOR RESIDUE 16D D 1404
17BC8SOFTWAREHIS E:145 , ASP E:147 , ASN E:159 , SER E:160 , ASP E:229 , ASP E:231 , MN E:1609 , MN E:1610 , HOH E:1679 , HOH E:1689BINDING SITE FOR RESIDUE 16D E 1405
18BC9SOFTWAREHIS F:145 , ASP F:147 , ASN F:159 , SER F:160 , ASP F:229 , ASP F:231 , MN F:1611 , MN F:1612 , HOH F:1654 , HOH F:1670BINDING SITE FOR RESIDUE 16D F 1406

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1WOG)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric/Biological Unit
No.Residues
1Pro A:64 -Pro A:65
2Gly A:118 -Gly A:119
3Pro B:64 -Pro B:65
4Gly B:118 -Gly B:119
5Pro C:64 -Pro C:65
6Gly C:118 -Gly C:119
7Pro D:64 -Pro D:65
8Gly D:118 -Gly D:119
9Pro E:64 -Pro E:65
10Gly E:118 -Gly E:119
11Pro F:64 -Pro F:65
12Gly F:118 -Gly F:119

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1WOG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1WOG)

(-) Exons   (0, 0)

(no "Exon" information available for 1WOG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:303
 aligned with Q9RZ04_DEIRA | Q9RZ04 from UniProtKB/TrEMBL  Length:304

    Alignment length:303
                                                                                                                                                                                                                                                                                                                                       304 
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302 | 
         Q9RZ04_DEIRA     3 GPAHLPYGGIPTFARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRLQGVTFADAGDVILPSLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFADVPDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFDHV-   -
               SCOP domains d1woga_ A: Agmatinase                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1wogA00 A:3-305  [code=3.40.800.10, no name defined]                                                                                                                                                                                                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhh..........eeeeeeee..........hhhhhhhhhhhhhh.....ee.....ee.....eeeeee......hhhhhhhhhhhhhhhhhh.eeeeeeee.hhhhhhhhhhhhh....eeeeee..................hhhhhhhhhh..eeeeeeeee.....hhhhhhhhhhh..eeeehhhhhhhhhhhhh......eeeeeee.hhh................hhhhhhhhhhhhhhhheeeeeeee..hhhhh..hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wog A   3 GPAHLPYGGIPTFARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRLQGVTFADAGDVILPSLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFADVPDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFDHVL 305
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302   


Chain B from PDB  Type:PROTEIN  Length:303
 aligned with Q9RZ04_DEIRA | Q9RZ04 from UniProtKB/TrEMBL  Length:304

    Alignment length:303
                                                                                                                                                                                                                                                                                                                                       304 
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302 | 
         Q9RZ04_DEIRA     3 GPAHLPYGGIPTFARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRLQGVTFADAGDVILPSLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFADVPDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFDHV-   -
               SCOP domains d1wogb_ B: Agmatinase                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1wogB00 B:3-305  [code=3.40.800.10, no name defined]                                                                                                                                                                                                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhh..........eeeeeeee..........hhhhhhhhhhhhhh.....ee.....ee.....eeeeee......hhhhhhhhhhhhhhhhhh.eeeeeeee.hhhhhhhhhhhhh....eeeeee..................hhhhhhhhhh..eeeeeeeee.....hhhhhhhhhhh..eeeehhhhhhhhhhhhh......eeeeeee.hhh................hhhhhhhhhhhhhhhheeeeeeee..hhhhh..hhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wog B   3 GPAHLPYGGIPTFARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRLQGVTFADAGDVILPSLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFADVPDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFDHVL 305
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302   


Chain C from PDB  Type:PROTEIN  Length:303
 aligned with Q9RZ04_DEIRA | Q9RZ04 from UniProtKB/TrEMBL  Length:304

    Alignment length:303
                                                                                                                                                                                                                                                                                                                                       304 
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302 | 
         Q9RZ04_DEIRA     3 GPAHLPYGGIPTFARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRLQGVTFADAGDVILPSLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFADVPDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFDHV-   -
               SCOP domains d1wogc_ C: Agmatinase                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1wogC00 C:3-305  [code=3.40.800.10, no name defined]                                                                                                                                                                                                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhh..........eeeeeeee..........hhhhhhhhhhhhhh.....ee.....ee.....eeeeee......hhhhhhhhhhhhhhhhhhheeeeeeee.hhhhhhhhhhh......eeeeee..................hhhhhhhhhh..eeeeeeeee.....hhhhhhhhhhh..eeeehhhhhhhhhhhhh......eeeeeee.hhh................hhhhhhhhhhhhhhhheeeeeeee..hhhhh..hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wog C   3 GPAHLPYGGIPTFARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRLQGVTFADAGDVILPSLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFADVPDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFDHVL 305
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302   


Chain D from PDB  Type:PROTEIN  Length:303
 aligned with Q9RZ04_DEIRA | Q9RZ04 from UniProtKB/TrEMBL  Length:304

    Alignment length:303
                                                                                                                                                                                                                                                                                                                                       304 
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302 | 
         Q9RZ04_DEIRA     3 GPAHLPYGGIPTFARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRLQGVTFADAGDVILPSLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFADVPDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFDHV-   -
               SCOP domains d1wogd_ D: Agmatinase                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1wogD00 D:3-305  [code=3.40.800.10, no name defined]                                                                                                                                                                                                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhh..........eeeeeeee..........hhhhhhhhhhhhhhhh...ee.....ee.....eeeeee......hhhhhhhhhhhhhhhhhh.eeeeeeee.hhhhhhhhhhhhh....eeeeee..................hhhhhhhh....eeeeeeeee.....hhhhhhhhhhh..eeeehhhhhhhhhhhhh......eeeeeee.hhh................hhhhhhhhhhhhhhh.eeeeeeee..hhhhh..hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wog D   3 GPAHLPYGGIPTFARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRLQGVTFADAGDVILPSLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFADVPDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFDHVL 305
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302   


Chain E from PDB  Type:PROTEIN  Length:303
 aligned with Q9RZ04_DEIRA | Q9RZ04 from UniProtKB/TrEMBL  Length:304

    Alignment length:303
                                                                                                                                                                                                                                                                                                                                       304 
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302 | 
         Q9RZ04_DEIRA     3 GPAHLPYGGIPTFARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRLQGVTFADAGDVILPSLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFADVPDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFDHV-   -
               SCOP domains d1woge_ E: Agmatinase                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1wogE00 E:3-305  [code=3.40.800.10, no name defined]                                                                                                                                                                                                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhh..........eeeeeeee..........hhhhhhhhhhhhhh.....ee.....ee.....eeeeee......hhhhhhhhhhhhhhhhhh.eeeeeeee.hhhhhhhhhhhhh....eeeeee..................hhhhhhhhhh..eeeeeeeee.....hhhhhhhhhhh..eeeehhhhhhhhhhhhh......eeeeeee.hhh................hhhhhhhhhhhhhhh.eeeeeeee..hhhhh..hhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wog E   3 GPAHLPYGGIPTFARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRLQGVTFADAGDVILPSLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFADVPDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFDHVL 305
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302   


Chain F from PDB  Type:PROTEIN  Length:303
 aligned with Q9RZ04_DEIRA | Q9RZ04 from UniProtKB/TrEMBL  Length:304

    Alignment length:303
                                                                                                                                                                                                                                                                                                                                       304 
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302 | 
         Q9RZ04_DEIRA     3 GPAHLPYGGIPTFARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRLQGVTFADAGDVILPSLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFADVPDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFDHV-   -
               SCOP domains d1wogf_ F: Agmatinase                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1wogF00 F:3-305  [code=3.40.800.10, no name defined]                                                                                                                                                                                                                                                            CATH domains
           Pfam domains (1) --------------------------Arginase-1wogF01 F:29-298                                                                                                                                                                                                                                                     ------- Pfam domains (1)
           Pfam domains (2) --------------------------Arginase-1wogF02 F:29-298                                                                                                                                                                                                                                                     ------- Pfam domains (2)
           Pfam domains (3) --------------------------Arginase-1wogF03 F:29-298                                                                                                                                                                                                                                                     ------- Pfam domains (3)
           Pfam domains (4) --------------------------Arginase-1wogF04 F:29-298                                                                                                                                                                                                                                                     ------- Pfam domains (4)
           Pfam domains (5) --------------------------Arginase-1wogF05 F:29-298                                                                                                                                                                                                                                                     ------- Pfam domains (5)
           Pfam domains (6) --------------------------Arginase-1wogF06 F:29-298                                                                                                                                                                                                                                                     ------- Pfam domains (6)
         Sec.struct. author ...........hhhhh..........eeeeeeee..........hhhhhhhhhhhhhh.....ee.....ee.....eeeeee......hhhhhhhhhhhhhhhhhh.eeeeeeee.hhhhhhhhhhhhh....eeeeee..................hhhhhhhhhh..eeeeeeeee.....hhhhhhhhhhh..eeeehhhhhhhhhhhhhh.....eeeeeee.hhh................hhhhhhhhhhhhhhh.eeeeeeee..hhhhh..hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wog F   3 GPAHLPYGGIPTFARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRLQGVTFADAGDVILPSLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFADVPDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFDHVL 305
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Clan: Arginase (56)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q9RZ04_DEIRA | Q9RZ04)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016813    hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines    Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a linear amidine, a compound of the form R-C(=NH)-NH2.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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  Q9RZ04_DEIRA | Q9RZ04
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9RZ04_DEIRA | Q9RZ04: 1woh 1woi

(-) Related Entries Specified in the PDB File

1woh THE SAME PROTEIN WITHOUT LIGAND
1woi THE SAME PROTEIN WITH MANGANESE (II) ION