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(-) Description

Title :  CRYSTAL STRUCTURE OF AGMATINASE REVEALS STRUCTURAL CONSERVATION AND INHIBITION MECHANISM OF THE UREOHYDROLASE SUPERFAMILY
 
Authors :  H. J. Ahn, K. H. Kim, J. Lee, J. -Y. Ha, H. H. Lee, D. Kim, H. -J. Yoon, A. - R. Kwon, S. W. Suh
Date :  18 Aug 04  (Deposition) - 07 Sep 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Alpha/Beta Fold, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. J. Ahn, K. H. Kim, J. Lee, J. -Y. Ha, H. H. Lee, D. Kim, H. -J. Yoon, A. -R. Kwon, S. W. Suh
Crystal Structure Of Agmatinase Reveals Structural Conservation And Inhibition Mechanism Of The Ureohydrolase Superfamily
J. Biol. Chem. V. 279 50505 2004
PubMed-ID: 15355972  |  Reference-DOI: 10.1074/JBC.M409246200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - AGMATINASE
    Chains: A, B, C, D, E, F
    EC Number: 3.5.3.11
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 12)

Asymmetric/Biological Unit (1, 12)
No.NameCountTypeFull Name
1MN12Ligand/IonMANGANESE (II) ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:121 , ASP A:143 , ASP A:147 , ASP A:229 , MN A:1502 , HOH A:1636BINDING SITE FOR RESIDUE MN A 1501
02AC2SOFTWAREASP A:143 , HIS A:145 , ASP A:229 , ASP A:231 , MN A:1501 , HOH A:1636BINDING SITE FOR RESIDUE MN A 1502
03AC3SOFTWAREHIS B:121 , ASP B:143 , ASP B:147 , ASP B:229 , MN B:1504 , HOH B:1601BINDING SITE FOR RESIDUE MN B 1503
04AC4SOFTWAREASP B:143 , HIS B:145 , ASP B:229 , ASP B:231 , MN B:1503 , HOH B:1601BINDING SITE FOR RESIDUE MN B 1504
05AC5SOFTWAREHIS C:121 , ASP C:143 , ASP C:147 , ASP C:229 , MN C:1506 , HOH C:1630BINDING SITE FOR RESIDUE MN C 1505
06AC6SOFTWAREASP C:143 , HIS C:145 , ASP C:229 , ASP C:231 , MN C:1505 , HOH C:1630BINDING SITE FOR RESIDUE MN C 1506
07AC7SOFTWAREHIS D:121 , ASP D:143 , ASP D:147 , ASP D:229 , MN D:1508 , HOH D:1600BINDING SITE FOR RESIDUE MN D 1507
08AC8SOFTWAREASP D:143 , HIS D:145 , ASP D:229 , ASP D:231 , MN D:1507 , HOH D:1600BINDING SITE FOR RESIDUE MN D 1508
09AC9SOFTWAREHIS E:121 , ASP E:143 , ASP E:147 , ASP E:229 , MN E:1510 , HOH E:1616BINDING SITE FOR RESIDUE MN E 1509
10BC1SOFTWAREASP E:143 , HIS E:145 , ASP E:229 , ASP E:231 , MN E:1509 , HOH E:1616BINDING SITE FOR RESIDUE MN E 1510
11BC2SOFTWAREHIS F:121 , ASP F:143 , ASP F:147 , ASP F:229 , MN F:1512 , HOH F:1627BINDING SITE FOR RESIDUE MN F 1511
12BC3SOFTWAREASP F:143 , HIS F:145 , ASP F:229 , ASP F:231 , MN F:1511 , HOH F:1627BINDING SITE FOR RESIDUE MN F 1512

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1WOI)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric/Biological Unit
No.Residues
1Pro A:64 -Pro A:65
2Gly A:118 -Gly A:119
3Pro B:64 -Pro B:65
4Gly B:118 -Gly B:119
5Pro C:64 -Pro C:65
6Gly C:118 -Gly C:119
7Pro D:64 -Pro D:65
8Gly D:118 -Gly D:119
9Pro E:64 -Pro E:65
10Gly E:118 -Gly E:119
11Pro F:64 -Pro F:65
12Gly F:118 -Gly F:119

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1WOI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1WOI)

(-) Exons   (0, 0)

(no "Exon" information available for 1WOI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:303
 aligned with Q9RZ04_DEIRA | Q9RZ04 from UniProtKB/TrEMBL  Length:304

    Alignment length:303
                                                                                                                                                                                                                                                                                                                                       304 
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302 | 
         Q9RZ04_DEIRA     3 GPAHLPYGGIPTFARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRLQGVTFADAGDVILPSLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFADVPDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFDHV-   -
               SCOP domains d1woia_ A: Agmatinase                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1woiA00 A:3-305  [code=3.40.800.10, no name defined]                                                                                                                                                                                                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhh..........eeeeeeee..........hhhhhhhhhhhhhh.....ee.....ee.....eeeeee......hhhhhhhhhhhhhhhhhh.eeeeeeee.hhhhhhhhhhhhh....eeeeee..................hhhhhhhhhh..eeeeeeeee.....hhhhhhhhhhh..eeeehhhhhhhhhhhhh......eeeeeee.hhh................hhhhhhhhhhhhhhhheeeeeeee..hhhhh..hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1woi A   3 GPAHLPYGGIPTFARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRLQGVTFADAGDVILPSLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFADVPDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFDHVL 305
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302   


Chain B from PDB  Type:PROTEIN  Length:303
 aligned with Q9RZ04_DEIRA | Q9RZ04 from UniProtKB/TrEMBL  Length:304

    Alignment length:303
                                                                                                                                                                                                                                                                                                                                       304 
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302 | 
         Q9RZ04_DEIRA     3 GPAHLPYGGIPTFARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRLQGVTFADAGDVILPSLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFADVPDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFDHV-   -
               SCOP domains d1woib_ B: Agmatinase                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1woiB00 B:3-305  [code=3.40.800.10, no name defined]                                                                                                                                                                                                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhh..........eeeeeeee..........hhhhhhhhhhhhhh.....ee.....ee.....eeeeee......hhhhhhhhhhhhhhhhhh.eeeeeeee.hhhhhhhhhhhhh....eeeeee..................hhhhhhhh....eeeeeeeee.....hhhhhhhhhhh..eeeehhhhhhhhhhhhh......eeeeeee.hhh................hhhhhhhhhhhhhhhheeeeeeee..hhhhh..hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1woi B   3 GPAHLPYGGIPTFARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRLQGVTFADAGDVILPSLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFADVPDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFDHVL 305
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302   


Chain C from PDB  Type:PROTEIN  Length:303
 aligned with Q9RZ04_DEIRA | Q9RZ04 from UniProtKB/TrEMBL  Length:304

    Alignment length:303
                                                                                                                                                                                                                                                                                                                                       304 
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302 | 
         Q9RZ04_DEIRA     3 GPAHLPYGGIPTFARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRLQGVTFADAGDVILPSLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFADVPDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFDHV-   -
               SCOP domains d1woic_ C: Agmatinase                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1woiC00 C:3-305  [code=3.40.800.10, no name defined]                                                                                                                                                                                                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhh..........eeeeeeee..........hhhhhhhhhhhhhh.....ee.....ee.....eeeeee......hhhhhhhhhhhhhhhhhhheeeeeeee.hhhhhhhhhhhhh....eeeeee..................hhhhhhhhhh..eeeeeeeee.....hhhhhhhhhhh..eeeehhhhhhhhhhhhh......eeeeeee.hhh................hhhhhhhhhhhhhhhheeeeeeee..hhhhh..hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1woi C   3 GPAHLPYGGIPTFARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRLQGVTFADAGDVILPSLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFADVPDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFDHVL 305
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302   


Chain D from PDB  Type:PROTEIN  Length:303
 aligned with Q9RZ04_DEIRA | Q9RZ04 from UniProtKB/TrEMBL  Length:304

    Alignment length:303
                                                                                                                                                                                                                                                                                                                                       304 
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302 | 
         Q9RZ04_DEIRA     3 GPAHLPYGGIPTFARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRLQGVTFADAGDVILPSLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFADVPDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFDHV-   -
               SCOP domains d1woid_ D: Agmatinase                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1woiD00 D:3-305  [code=3.40.800.10, no name defined]                                                                                                                                                                                                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhh..........eeeeeeee..........hhhhhhhhhhhhhh.....ee.....ee.....eeeeee......hhhhhhhhhhhhhhhhhh.eeeeeeee.hhhhhhhhhhhhh....eeeeee..................hhhhhhhhhh..eeeeeeeee.....hhhhhhhhhhh..eeeehhhhhhhhhhhhh......eeeeeee.hhh................hhhhhhhhhhhhhhh.eeeeeeee..hhhhh..hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1woi D   3 GPAHLPYGGIPTFARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRLQGVTFADAGDVILPSLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFADVPDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFDHVL 305
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302   


Chain E from PDB  Type:PROTEIN  Length:303
 aligned with Q9RZ04_DEIRA | Q9RZ04 from UniProtKB/TrEMBL  Length:304

    Alignment length:303
                                                                                                                                                                                                                                                                                                                                       304 
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302 | 
         Q9RZ04_DEIRA     3 GPAHLPYGGIPTFARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRLQGVTFADAGDVILPSLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFADVPDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFDHV-   -
               SCOP domains d1woie_ E: Agmatinase                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1woiE00 E:3-305  [code=3.40.800.10, no name defined]                                                                                                                                                                                                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhh..........eeeeeeee..........hhhhhhhhhhhhhh.....ee.....ee.....eeeeee......hhhhhhhhhhhhhhhhhh.eeeeeeee.hhhhhhhhhhhhh....eeeeee..................hhhhhhhhhh..eeeeeeeee.....hhhhhhhhhhh..eeeehhhhhhhhhhhhh......eeeeeee.hhh................hhhhhhhhhhhhhhh.eeeeeeee..hhhhh..hhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1woi E   3 GPAHLPYGGIPTFARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRLQGVTFADAGDVILPSLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFADVPDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFDHVL 305
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302   


Chain F from PDB  Type:PROTEIN  Length:303
 aligned with Q9RZ04_DEIRA | Q9RZ04 from UniProtKB/TrEMBL  Length:304

    Alignment length:303
                                                                                                                                                                                                                                                                                                                                       304 
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302 | 
         Q9RZ04_DEIRA     3 GPAHLPYGGIPTFARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRLQGVTFADAGDVILPSLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFADVPDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFDHV-   -
               SCOP domains d1woif_ F: Agmatinase                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1woiF00 F:3-305  [code=3.40.800.10, no name defined]                                                                                                                                                                                                                                                            CATH domains
           Pfam domains (1) --------------------------Arginase-1woiF01 F:29-298                                                                                                                                                                                                                                                     ------- Pfam domains (1)
           Pfam domains (2) --------------------------Arginase-1woiF02 F:29-298                                                                                                                                                                                                                                                     ------- Pfam domains (2)
           Pfam domains (3) --------------------------Arginase-1woiF03 F:29-298                                                                                                                                                                                                                                                     ------- Pfam domains (3)
           Pfam domains (4) --------------------------Arginase-1woiF04 F:29-298                                                                                                                                                                                                                                                     ------- Pfam domains (4)
           Pfam domains (5) --------------------------Arginase-1woiF05 F:29-298                                                                                                                                                                                                                                                     ------- Pfam domains (5)
           Pfam domains (6) --------------------------Arginase-1woiF06 F:29-298                                                                                                                                                                                                                                                     ------- Pfam domains (6)
         Sec.struct. author ...........hhhhh..........eeeeeeee..........hhhhhhhhhhhhhh.....ee.....ee.....eeeeee......hhhhhhhhhhhhhhhhhh.eeeeeeee.hhhhhhhhhhhhh....eeeeee..................hhhhhhhhhh..eeeeeeeee.....hhhhhhhhhhh..eeeehhhhhhhhhhhhhh.....eeeeeee.hhh................hhhhhhhhhhhhhhhheeeeeeee..hhhhh..hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1woi F   3 GPAHLPYGGIPTFARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRLQGVTFADAGDVILPSLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFADVPDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFDHVL 305
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Clan: Arginase (56)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q9RZ04_DEIRA | Q9RZ04)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016813    hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines    Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a linear amidine, a compound of the form R-C(=NH)-NH2.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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  Cis Peptide Bonds
    Gly A:118 - Gly A:119   [ RasMol ]  
    Gly B:118 - Gly B:119   [ RasMol ]  
    Gly C:118 - Gly C:119   [ RasMol ]  
    Gly D:118 - Gly D:119   [ RasMol ]  
    Gly E:118 - Gly E:119   [ RasMol ]  
    Gly F:118 - Gly F:119   [ RasMol ]  
    Pro A:64 - Pro A:65   [ RasMol ]  
    Pro B:64 - Pro B:65   [ RasMol ]  
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    Pro D:64 - Pro D:65   [ RasMol ]  
    Pro E:64 - Pro E:65   [ RasMol ]  
    Pro F:64 - Pro F:65   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9RZ04_DEIRA | Q9RZ04: 1wog 1woh

(-) Related Entries Specified in the PDB File

1wog THE SAME PROTEIN WITH HEXANE-1,6-DIAMINE
1woh THE SAME PROTEIN WITHOUT LIGAND