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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF AGMATINASE REVEALS STRUCTURAL CONSERVATION AND INHIBITION MECHANISM OF THE UREOHYDROLASE SUPERFAMILY
Keywords ALPHA/BETA FOLD, HYDROLASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1WOG     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   AGMATINASE  A 303 2287 0
2  Protein   AGMATINASE  B 303 2287 0
3  Protein   AGMATINASE  C 303 2287 0
4  Protein   AGMATINASE  D 303 2287 0
5  Protein   AGMATINASE  E 303 2287 0
6  Protein   AGMATINASE  F 303 2287 0
7  Ligand   AGMATINASE  A 3 0 10
8  Ligand   AGMATINASE  B 3 0 10
9  Ligand   AGMATINASE  C 3 0 10
10  Ligand   AGMATINASE  D 3 0 10
11  Ligand   AGMATINASE  E 3 0 10
12  Ligand   AGMATINASE  F 3 0 10
13 Water     843 0 843
total       2679 13722 903

Proteins
Unit 1 GLY3 PRO4 ALA5 HIS6 LEU7 PRO8 TYR9 GLY10 GLY11 ILE12 PRO13 THR14 PHE15 ALA16 ARG17 ALA18 PRO19 LEU20 VAL21 GLN22 PRO23 ASP24 GLY25 ASP26 TRP27 GLN28 ALA29 ASP30 VAL31 ALA32 ALA33 LEU34 GLY35 VAL36 PRO37 PHE38 ASP39 ILE40 ALA41 LEU42 GLY43 PHE44 ARG45 PRO46 GLY47 ALA48 ARG49 PHE50 ALA51 PRO52 ARG53 ALA54 LEU55 ARG56 GLU57 ALA58 SER59 LEU60 ARG61 SER62 VAL63 PRO64 PRO65 PHE66 THR67 GLY68 LEU69 ASP70 GLY71 LYS72 THR73 ARG74 LEU75 GLN76 GLY77 VAL78 THR79 PHE80 ALA81 ASP82 ALA83 GLY84 ASP85 VAL86 ILE87 LEU88 PRO89 SER90 LEU91 GLU92 PRO93 GLN94 LEU95 ALA96 HIS97 ASP98 ARG99 ILE100 THR101 GLU102 ALA103 ALA104 ARG105 GLN106 VAL107 ARG108 GLY109 ARG110 CYS111 ARG112 VAL113 PRO114 VAL115 PHE116 LEU117 GLY118 GLY119 ASP120 HIS121 SER122 VAL123 SER124 TYR125 PRO126 LEU127 LEU128 ARG129 ALA130 PHE131 ALA132 ASP133 VAL134 PRO135 ASP136 LEU137 HIS138 VAL139 VAL140 GLN141 LEU142 ASP143 ALA144 HIS145 LEU146 ASP147 PHE148 THR149 ASP150 THR151 ARG152 ASN153 ASP154 THR155 LYS156 TRP157 SER158 ASN159 SER160 SER161 PRO162 PHE163 ARG164 ARG165 ALA166 CYS167 GLU168 ALA169 LEU170 PRO171 ASN172 LEU173 VAL174 HIS175 ILE176 THR177 THR178 VAL179 GLY180 LEU181 ARG182 GLY183 LEU184 ARG185 PHE186 ASP187 PRO188 GLU189 ALA190 VAL191 ALA192 ALA193 ALA194 ARG195 ALA196 ARG197 GLY198 HIS199 THR200 ILE201 ILE202 PRO203 MET204 ASP205 ASP206 VAL207 THR208 ALA209 ASP210 LEU211 ALA212 GLY213 VAL214 LEU215 ALA216 GLN217 LEU218 PRO219 ARG220 GLY221 GLN222 ASN223 VAL224 TYR225 PHE226 SER227 VAL228 ASP229 VAL230 ASP231 GLY232 PHE233 ASP234 PRO235 ALA236 VAL237 ILE238 PRO239 GLY240 THR241 SER242 SER243 PRO244 GLU245 PRO246 ASP247 GLY248 LEU249 THR250 TYR251 ALA252 GLN253 GLY254 MET255 LYS256 ILE257 LEU258 ALA259 ALA260 ALA261 ALA262 ALA263 ASN264 ASN265 THR266 VAL267 VAL268 GLY269 LEU270 ASP271 LEU272 VAL273 GLU274 LEU275 ALA276 PRO277 ASN278 LEU279 ASP280 PRO281 THR282 GLY283 ARG284 SER285 GLU286 LEU287 LEU288 MET289 ALA290 ARG291 LEU292 VAL293 MET294 GLU295 THR296 LEU297 CYS298 GLU299 VAL300 PHE301 ASP302 HIS303 VAL304 LEU305
Unit 2 GLY3 PRO4 ALA5 HIS6 LEU7 PRO8 TYR9 GLY10 GLY11 ILE12 PRO13 THR14 PHE15 ALA16 ARG17 ALA18 PRO19 LEU20 VAL21 GLN22 PRO23 ASP24 GLY25 ASP26 TRP27 GLN28 ALA29 ASP30 VAL31 ALA32 ALA33 LEU34 GLY35 VAL36 PRO37 PHE38 ASP39 ILE40 ALA41 LEU42 GLY43 PHE44 ARG45 PRO46 GLY47 ALA48 ARG49 PHE50 ALA51 PRO52 ARG53 ALA54 LEU55 ARG56 GLU57 ALA58 SER59 LEU60 ARG61 SER62 VAL63 PRO64 PRO65 PHE66 THR67 GLY68 LEU69 ASP70 GLY71 LYS72 THR73 ARG74 LEU75 GLN76 GLY77 VAL78 THR79 PHE80 ALA81 ASP82 ALA83 GLY84 ASP85 VAL86 ILE87 LEU88 PRO89 SER90 LEU91 GLU92 PRO93 GLN94 LEU95 ALA96 HIS97 ASP98 ARG99 ILE100 THR101 GLU102 ALA103 ALA104 ARG105 GLN106 VAL107 ARG108 GLY109 ARG110 CYS111 ARG112 VAL113 PRO114 VAL115 PHE116 LEU117 GLY118 GLY119 ASP120 HIS121 SER122 VAL123 SER124 TYR125 PRO126 LEU127 LEU128 ARG129 ALA130 PHE131 ALA132 ASP133 VAL134 PRO135 ASP136 LEU137 HIS138 VAL139 VAL140 GLN141 LEU142 ASP143 ALA144 HIS145 LEU146 ASP147 PHE148 THR149 ASP150 THR151 ARG152 ASN153 ASP154 THR155 LYS156 TRP157 SER158 ASN159 SER160 SER161 PRO162 PHE163 ARG164 ARG165 ALA166 CYS167 GLU168 ALA169 LEU170 PRO171 ASN172 LEU173 VAL174 HIS175 ILE176 THR177 THR178 VAL179 GLY180 LEU181 ARG182 GLY183 LEU184 ARG185 PHE186 ASP187 PRO188 GLU189 ALA190 VAL191 ALA192 ALA193 ALA194 ARG195 ALA196 ARG197 GLY198 HIS199 THR200 ILE201 ILE202 PRO203 MET204 ASP205 ASP206 VAL207 THR208 ALA209 ASP210 LEU211 ALA212 GLY213 VAL214 LEU215 ALA216 GLN217 LEU218 PRO219 ARG220 GLY221 GLN222 ASN223 VAL224 TYR225 PHE226 SER227 VAL228 ASP229 VAL230 ASP231 GLY232 PHE233 ASP234 PRO235 ALA236 VAL237 ILE238 PRO239 GLY240 THR241 SER242 SER243 PRO244 GLU245 PRO246 ASP247 GLY248 LEU249 THR250 TYR251 ALA252 GLN253 GLY254 MET255 LYS256 ILE257 LEU258 ALA259 ALA260 ALA261 ALA262 ALA263 ASN264 ASN265 THR266 VAL267 VAL268 GLY269 LEU270 ASP271 LEU272 VAL273 GLU274 LEU275 ALA276 PRO277 ASN278 LEU279 ASP280 PRO281 THR282 GLY283 ARG284 SER285 GLU286 LEU287 LEU288 MET289 ALA290 ARG291 LEU292 VAL293 MET294 GLU295 THR296 LEU297 CYS298 GLU299 VAL300 PHE301 ASP302 HIS303 VAL304 LEU305
Unit 3 GLY3 PRO4 ALA5 HIS6 LEU7 PRO8 TYR9 GLY10 GLY11 ILE12 PRO13 THR14 PHE15 ALA16 ARG17 ALA18 PRO19 LEU20 VAL21 GLN22 PRO23 ASP24 GLY25 ASP26 TRP27 GLN28 ALA29 ASP30 VAL31 ALA32 ALA33 LEU34 GLY35 VAL36 PRO37 PHE38 ASP39 ILE40 ALA41 LEU42 GLY43 PHE44 ARG45 PRO46 GLY47 ALA48 ARG49 PHE50 ALA51 PRO52 ARG53 ALA54 LEU55 ARG56 GLU57 ALA58 SER59 LEU60 ARG61 SER62 VAL63 PRO64 PRO65 PHE66 THR67 GLY68 LEU69 ASP70 GLY71 LYS72 THR73 ARG74 LEU75 GLN76 GLY77 VAL78 THR79 PHE80 ALA81 ASP82 ALA83 GLY84 ASP85 VAL86 ILE87 LEU88 PRO89 SER90 LEU91 GLU92 PRO93 GLN94 LEU95 ALA96 HIS97 ASP98 ARG99 ILE100 THR101 GLU102 ALA103 ALA104 ARG105 GLN106 VAL107 ARG108 GLY109 ARG110 CYS111 ARG112 VAL113 PRO114 VAL115 PHE116 LEU117 GLY118 GLY119 ASP120 HIS121 SER122 VAL123 SER124 TYR125 PRO126 LEU127 LEU128 ARG129 ALA130 PHE131 ALA132 ASP133 VAL134 PRO135 ASP136 LEU137 HIS138 VAL139 VAL140 GLN141 LEU142 ASP143 ALA144 HIS145 LEU146 ASP147 PHE148 THR149 ASP150 THR151 ARG152 ASN153 ASP154 THR155 LYS156 TRP157 SER158 ASN159 SER160 SER161 PRO162 PHE163 ARG164 ARG165 ALA166 CYS167 GLU168 ALA169 LEU170 PRO171 ASN172 LEU173 VAL174 HIS175 ILE176 THR177 THR178 VAL179 GLY180 LEU181 ARG182 GLY183 LEU184 ARG185 PHE186 ASP187 PRO188 GLU189 ALA190 VAL191 ALA192 ALA193 ALA194 ARG195 ALA196 ARG197 GLY198 HIS199 THR200 ILE201 ILE202 PRO203 MET204 ASP205 ASP206 VAL207 THR208 ALA209 ASP210 LEU211 ALA212 GLY213 VAL214 LEU215 ALA216 GLN217 LEU218 PRO219 ARG220 GLY221 GLN222 ASN223 VAL224 TYR225 PHE226 SER227 VAL228 ASP229 VAL230 ASP231 GLY232 PHE233 ASP234 PRO235 ALA236 VAL237 ILE238 PRO239 GLY240 THR241 SER242 SER243 PRO244 GLU245 PRO246 ASP247 GLY248 LEU249 THR250 TYR251 ALA252 GLN253 GLY254 MET255 LYS256 ILE257 LEU258 ALA259 ALA260 ALA261 ALA262 ALA263 ASN264 ASN265 THR266 VAL267 VAL268 GLY269 LEU270 ASP271 LEU272 VAL273 GLU274 LEU275 ALA276 PRO277 ASN278 LEU279 ASP280 PRO281 THR282 GLY283 ARG284 SER285 GLU286 LEU287 LEU288 MET289 ALA290 ARG291 LEU292 VAL293 MET294 GLU295 THR296 LEU297 CYS298 GLU299 VAL300 PHE301 ASP302 HIS303 VAL304 LEU305
Unit 4 GLY3 PRO4 ALA5 HIS6 LEU7 PRO8 TYR9 GLY10 GLY11 ILE12 PRO13 THR14 PHE15 ALA16 ARG17 ALA18 PRO19 LEU20 VAL21 GLN22 PRO23 ASP24 GLY25 ASP26 TRP27 GLN28 ALA29 ASP30 VAL31 ALA32 ALA33 LEU34 GLY35 VAL36 PRO37 PHE38 ASP39 ILE40 ALA41 LEU42 GLY43 PHE44 ARG45 PRO46 GLY47 ALA48 ARG49 PHE50 ALA51 PRO52 ARG53 ALA54 LEU55 ARG56 GLU57 ALA58 SER59 LEU60 ARG61 SER62 VAL63 PRO64 PRO65 PHE66 THR67 GLY68 LEU69 ASP70 GLY71 LYS72 THR73 ARG74 LEU75 GLN76 GLY77 VAL78 THR79 PHE80 ALA81 ASP82 ALA83 GLY84 ASP85 VAL86 ILE87 LEU88 PRO89 SER90 LEU91 GLU92 PRO93 GLN94 LEU95 ALA96 HIS97 ASP98 ARG99 ILE100 THR101 GLU102 ALA103 ALA104 ARG105 GLN106 VAL107 ARG108 GLY109 ARG110 CYS111 ARG112 VAL113 PRO114 VAL115 PHE116 LEU117 GLY118 GLY119 ASP120 HIS121 SER122 VAL123 SER124 TYR125 PRO126 LEU127 LEU128 ARG129 ALA130 PHE131 ALA132 ASP133 VAL134 PRO135 ASP136 LEU137 HIS138 VAL139 VAL140 GLN141 LEU142 ASP143 ALA144 HIS145 LEU146 ASP147 PHE148 THR149 ASP150 THR151 ARG152 ASN153 ASP154 THR155 LYS156 TRP157 SER158 ASN159 SER160 SER161 PRO162 PHE163 ARG164 ARG165 ALA166 CYS167 GLU168 ALA169 LEU170 PRO171 ASN172 LEU173 VAL174 HIS175 ILE176 THR177 THR178 VAL179 GLY180 LEU181 ARG182 GLY183 LEU184 ARG185 PHE186 ASP187 PRO188 GLU189 ALA190 VAL191 ALA192 ALA193 ALA194 ARG195 ALA196 ARG197 GLY198 HIS199 THR200 ILE201 ILE202 PRO203 MET204 ASP205 ASP206 VAL207 THR208 ALA209 ASP210 LEU211 ALA212 GLY213 VAL214 LEU215 ALA216 GLN217 LEU218 PRO219 ARG220 GLY221 GLN222 ASN223 VAL224 TYR225 PHE226 SER227 VAL228 ASP229 VAL230 ASP231 GLY232 PHE233 ASP234 PRO235 ALA236 VAL237 ILE238 PRO239 GLY240 THR241 SER242 SER243 PRO244 GLU245 PRO246 ASP247 GLY248 LEU249 THR250 TYR251 ALA252 GLN253 GLY254 MET255 LYS256 ILE257 LEU258 ALA259 ALA260 ALA261 ALA262 ALA263 ASN264 ASN265 THR266 VAL267 VAL268 GLY269 LEU270 ASP271 LEU272 VAL273 GLU274 LEU275 ALA276 PRO277 ASN278 LEU279 ASP280 PRO281 THR282 GLY283 ARG284 SER285 GLU286 LEU287 LEU288 MET289 ALA290 ARG291 LEU292 VAL293 MET294 GLU295 THR296 LEU297 CYS298 GLU299 VAL300 PHE301 ASP302 HIS303 VAL304 LEU305
Unit 5 GLY3 PRO4 ALA5 HIS6 LEU7 PRO8 TYR9 GLY10 GLY11 ILE12 PRO13 THR14 PHE15 ALA16 ARG17 ALA18 PRO19 LEU20 VAL21 GLN22 PRO23 ASP24 GLY25 ASP26 TRP27 GLN28 ALA29 ASP30 VAL31 ALA32 ALA33 LEU34 GLY35 VAL36 PRO37 PHE38 ASP39 ILE40 ALA41 LEU42 GLY43 PHE44 ARG45 PRO46 GLY47 ALA48 ARG49 PHE50 ALA51 PRO52 ARG53 ALA54 LEU55 ARG56 GLU57 ALA58 SER59 LEU60 ARG61 SER62 VAL63 PRO64 PRO65 PHE66 THR67 GLY68 LEU69 ASP70 GLY71 LYS72 THR73 ARG74 LEU75 GLN76 GLY77 VAL78 THR79 PHE80 ALA81 ASP82 ALA83 GLY84 ASP85 VAL86 ILE87 LEU88 PRO89 SER90 LEU91 GLU92 PRO93 GLN94 LEU95 ALA96 HIS97 ASP98 ARG99 ILE100 THR101 GLU102 ALA103 ALA104 ARG105 GLN106 VAL107 ARG108 GLY109 ARG110 CYS111 ARG112 VAL113 PRO114 VAL115 PHE116 LEU117 GLY118 GLY119 ASP120 HIS121 SER122 VAL123 SER124 TYR125 PRO126 LEU127 LEU128 ARG129 ALA130 PHE131 ALA132 ASP133 VAL134 PRO135 ASP136 LEU137 HIS138 VAL139 VAL140 GLN141 LEU142 ASP143 ALA144 HIS145 LEU146 ASP147 PHE148 THR149 ASP150 THR151 ARG152 ASN153 ASP154 THR155 LYS156 TRP157 SER158 ASN159 SER160 SER161 PRO162 PHE163 ARG164 ARG165 ALA166 CYS167 GLU168 ALA169 LEU170 PRO171 ASN172 LEU173 VAL174 HIS175 ILE176 THR177 THR178 VAL179 GLY180 LEU181 ARG182 GLY183 LEU184 ARG185 PHE186 ASP187 PRO188 GLU189 ALA190 VAL191 ALA192 ALA193 ALA194 ARG195 ALA196 ARG197 GLY198 HIS199 THR200 ILE201 ILE202 PRO203 MET204 ASP205 ASP206 VAL207 THR208 ALA209 ASP210 LEU211 ALA212 GLY213 VAL214 LEU215 ALA216 GLN217 LEU218 PRO219 ARG220 GLY221 GLN222 ASN223 VAL224 TYR225 PHE226 SER227 VAL228 ASP229 VAL230 ASP231 GLY232 PHE233 ASP234 PRO235 ALA236 VAL237 ILE238 PRO239 GLY240 THR241 SER242 SER243 PRO244 GLU245 PRO246 ASP247 GLY248 LEU249 THR250 TYR251 ALA252 GLN253 GLY254 MET255 LYS256 ILE257 LEU258 ALA259 ALA260 ALA261 ALA262 ALA263 ASN264 ASN265 THR266 VAL267 VAL268 GLY269 LEU270 ASP271 LEU272 VAL273 GLU274 LEU275 ALA276 PRO277 ASN278 LEU279 ASP280 PRO281 THR282 GLY283 ARG284 SER285 GLU286 LEU287 LEU288 MET289 ALA290 ARG291 LEU292 VAL293 MET294 GLU295 THR296 LEU297 CYS298 GLU299 VAL300 PHE301 ASP302 HIS303 VAL304 LEU305
Unit 6 GLY3 PRO4 ALA5 HIS6 LEU7 PRO8 TYR9 GLY10 GLY11 ILE12 PRO13 THR14 PHE15 ALA16 ARG17 ALA18 PRO19 LEU20 VAL21 GLN22 PRO23 ASP24 GLY25 ASP26 TRP27 GLN28 ALA29 ASP30 VAL31 ALA32 ALA33 LEU34 GLY35 VAL36 PRO37 PHE38 ASP39 ILE40 ALA41 LEU42 GLY43 PHE44 ARG45 PRO46 GLY47 ALA48 ARG49 PHE50 ALA51 PRO52 ARG53 ALA54 LEU55 ARG56 GLU57 ALA58 SER59 LEU60 ARG61 SER62 VAL63 PRO64 PRO65 PHE66 THR67 GLY68 LEU69 ASP70 GLY71 LYS72 THR73 ARG74 LEU75 GLN76 GLY77 VAL78 THR79 PHE80 ALA81 ASP82 ALA83 GLY84 ASP85 VAL86 ILE87 LEU88 PRO89 SER90 LEU91 GLU92 PRO93 GLN94 LEU95 ALA96 HIS97 ASP98 ARG99 ILE100 THR101 GLU102 ALA103 ALA104 ARG105 GLN106 VAL107 ARG108 GLY109 ARG110 CYS111 ARG112 VAL113 PRO114 VAL115 PHE116 LEU117 GLY118 GLY119 ASP120 HIS121 SER122 VAL123 SER124 TYR125 PRO126 LEU127 LEU128 ARG129 ALA130 PHE131 ALA132 ASP133 VAL134 PRO135 ASP136 LEU137 HIS138 VAL139 VAL140 GLN141 LEU142 ASP143 ALA144 HIS145 LEU146 ASP147 PHE148 THR149 ASP150 THR151 ARG152 ASN153 ASP154 THR155 LYS156 TRP157 SER158 ASN159 SER160 SER161 PRO162 PHE163 ARG164 ARG165 ALA166 CYS167 GLU168 ALA169 LEU170 PRO171 ASN172 LEU173 VAL174 HIS175 ILE176 THR177 THR178 VAL179 GLY180 LEU181 ARG182 GLY183 LEU184 ARG185 PHE186 ASP187 PRO188 GLU189 ALA190 VAL191 ALA192 ALA193 ALA194 ARG195 ALA196 ARG197 GLY198 HIS199 THR200 ILE201 ILE202 PRO203 MET204 ASP205 ASP206 VAL207 THR208 ALA209 ASP210 LEU211 ALA212 GLY213 VAL214 LEU215 ALA216 GLN217 LEU218 PRO219 ARG220 GLY221 GLN222 ASN223 VAL224 TYR225 PHE226 SER227 VAL228 ASP229 VAL230 ASP231 GLY232 PHE233 ASP234 PRO235 ALA236 VAL237 ILE238 PRO239 GLY240 THR241 SER242 SER243 PRO244 GLU245 PRO246 ASP247 GLY248 LEU249 THR250 TYR251 ALA252 GLN253 GLY254 MET255 LYS256 ILE257 LEU258 ALA259 ALA260 ALA261 ALA262 ALA263 ASN264 ASN265 THR266 VAL267 VAL268 GLY269 LEU270 ASP271 LEU272 VAL273 GLU274 LEU275 ALA276 PRO277 ASN278 LEU279 ASP280 PRO281 THR282 GLY283 ARG284 SER285 GLU286 LEU287 LEU288 MET289 ALA290 ARG291 LEU292 VAL293 MET294 GLU295 THR296 LEU297 CYS298 GLU299 VAL300 PHE301 ASP302 HIS303 VAL304 LEU305

Ligands
Unit 7 16D1401 MN1601 MN1602
Unit 8 16D1402 MN1603 MN1604
Unit 9 16D1403 MN1605 MN1606
Unit 10 16D1404 MN1607 MN1608
Unit 11 16D1405 MN1609 MN1610
Unit 12 16D1406 MN1611 MN1612

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany