1W3D - JenaLib

Title :   NMR STRUCTURE OF THE PERIPHERAL-SUBUNIT BINDING DOMAIN OF BACILLUS STEAROTHERMOPHILUS E2P

Authors :   M. D. Allen, R. W. Broadhurst, R. G. Solomon, R. N. Perham

Date :   14 Jul 04 (Deposition) - 20 Jul 04 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (20x)

Keywords :   Transferase, Peripheral-Subunit Binding Domain, Dihydrolipoamide Acetyltransferase, Dihydrolipoamide Dehydrogenase, Protein- Protein Interaction, Nmr, Protein Structure, Multienzyme Complex, Bacillus Sterothermophilus, Glycolysis, Acyltransferase, Lipoyl (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. D. Allen, R. W. Broadhurst, R. G. Solomon, R. N. Perham
Interaction Of The E2 And E3 Components Of The Pyruvate Dehydrogenase Multienzyme Complex Of Bacillus Stearothermophilus. Use Of A Truncated Protein Domain In Nmr Spectroscopy
Febs J. V. 272 259 2005
PubMed-ID: 15634348 | Reference-DOI: 10.1111/J.1432-1033.2004.04405.X

Compounds

Molecule 1 - DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE
	Chains	:	A
	EC Number	:	2.3.1.12
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	C41
	Expression System Taxid	:	562
	Expression System Vector	:	PET11C
	Fragment	:	RESIDUES 118-170
	Organism Scientific	:	GEOBACILLUS STEAROTHERMOPHILUS
	Organism Taxid	:	1422
	Synonym	:	COMPLEX DIHYDROPOAMIDE ACETYLTRANSFERASE

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

Exons (0, 0)

Sequences/Alignments

NMR Structure

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Chain A from PDB  Type:PROTEIN  Length:46
 aligned with ODP2_GEOSE | P11961 from UniProtKB/Swiss-Prot  Length:428

    Alignment length:46
                                   135       145       155       165      
           ODP2_GEOSE   126 NRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGA 171
               SCOP domains d1w3da_ A:                                     SCOP domains
               CATH domains 1w3dA00 A:126-171 Dihydrolipoamide Transferase CATH domains
               Pfam domains -E3_binding-1w3dA01 A:127-165           ------ Pfam domains
         Sec.struct. author ......hhhhhhhhhhhh.hhhhh.........hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------- SAPs(SNPs)
                    PROSITE ----PSBD  PDB: A:130-167 UniProt: 130-167 ---- PROSITE
                 Transcript ---------------------------------------------- Transcript
                 1w3d A 126 NRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGA 171
                                   135       145       155       165

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Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (1, 1)

Gene Ontology (5, 5)

NMR Structure(hide GO term definitions)

Chain A (ODP2_GEOSE | P11961)

molecular function
	GO:0004742	dihydrolipoyllysine-residue acetyltransferase activity	Catalysis of the reaction: acetyl-CoA + dihydrolipoamide = CoA + S-acetyldihydrolipoamide.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016746	transferase activity, transferring acyl groups	Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
biological process
	GO:0006096	glycolytic process	The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

1b5s	DIHYDROLIPOYL TRANSACETYLASE CATALYTIC DOMAIN ( RESIDUES 184-425) FROM BACILLUS STEAROTHERMOPHILUS
1ebd	DIHYDROLIPOAMIDE DEHYDROGENASE COMPLEXED WITH THE BINDING DOMAIN OF THE DIHYDROLIPOAMIDE ACETYLASE
1lab	DIHYDROLIPOAMIDE ACETYLTRANSFERASE (E2P) SUBUNIT OF THE PYRUVATE DEHYDROGENASE (PDH) MULTIENZYME COMPLEX (LIPOYLATED DOMAIN, RESIDUES 1 - 80) (NMR, 11 STRUCTURES)
1lac	DIHYDROLIPOAMIDE ACETYLTRANSFERASE (E2P) SUBUNIT OF THE PYRUVATE DEHYDROGENASE (PDH) MULTIENZYME COMPLEX (LIPOYLATED DOMAIN, RESIDUES 1 - 80) (NMR, AVERAGE STRUCTURE)
2pdd	DIHYDROLIPOAMIDE ACETYLTRANSFERASE (E2P) SUBUNIT OF THE PYRUVATE DEHYDROGENASE (PDH) MULTIENZYME COMPLEX (PYRUVATE DECARBOXYLASE (E1P ) / DIHYDROLIPOAMIDE DEHYDROGENASE (E3) 43 RESIDUE BINDING DOMAIN) (NMR, 35 STRUCTURES)
2pde	DIHYDROLIPOAMIDE ACETYLTRANSFERASE (E2P) SUBUNIT OF THE PYRUVATE DEHYDROGENASE (PDH) MULTIENZYME COMPLEX (PYRUVATE DECARBOXYLASE (E1P ) / DIHYDROLIPOAMIDE DEHYDROGENASE (E3) 43 RESIDUE BINDING DOMAIN) (NMR, AVERAGE STRUCTURE)

Description