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1UT1
Biol. Unit 2
Info
Asym.Unit (160 KB)
Biol.Unit 1 (80 KB)
Biol.Unit 2 (78 KB)
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(1)
Title
:
DRAE ADHESIN FROM ESCHERICHIA COLI
Authors
:
K. L. Anderson, J. Billington, D. Pettigrew, E. Cota, P. Roversi, P. Simpson, H. A. Chen, P. Urvil, L. Dumerle, P. Barlow, E. Medof, R. A. G. Smith, B. Nowicki, C. Le Bouguenec, S. M. Lea, S. Matthews
Date
:
02 Dec 03 (Deposition) - 31 Aug 04 (Release) - 05 Sep 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,D,E (1x)
Biol. Unit 2: B,C,F (1x)
Keywords
:
Adhesin, Protein Binding Fimbrial Adhesin, Upec, Daec
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Pettigrew, K. L. Anderson, J. Billington, E. Cota, P. Simpson, P. Urvil, F. Rabuzin, P. Roversi, B. Nowicki, L. Du Merle, C. Le Bouguenec, S. Matthews, S. M. Lea
High Resolution Studies Of The Afa/Dr Adhesin Drae And Its Interaction With Chloramphenicol
J. Biol. Chem. V. 279 46851 2004
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 16)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1aa: 1,2-ETHANEDIOL (EDOaa)
1ab: 1,2-ETHANEDIOL (EDOab)
1ac: 1,2-ETHANEDIOL (EDOac)
1ad: 1,2-ETHANEDIOL (EDOad)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
1y: 1,2-ETHANEDIOL (EDOy)
1z: 1,2-ETHANEDIOL (EDOz)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
10
Ligand/Ion
1,2-ETHANEDIOL
2
SO4
6
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(26, 26)
Info
All Sites
01: AC3 (SOFTWARE)
02: AC4 (SOFTWARE)
03: AC5 (SOFTWARE)
04: AC6 (SOFTWARE)
05: AC7 (SOFTWARE)
06: BC3 (SOFTWARE)
07: BC6 (SOFTWARE)
08: BC8 (SOFTWARE)
09: BC9 (SOFTWARE)
10: CC2 (SOFTWARE)
11: CC3 (SOFTWARE)
12: CC4 (SOFTWARE)
13: CC5 (SOFTWARE)
14: CC6 (SOFTWARE)
15: CC7 (SOFTWARE)
16: CC8 (SOFTWARE)
17: DC2 (SOFTWARE)
18: DC3 (SOFTWARE)
19: DC5 (SOFTWARE)
20: DC6 (SOFTWARE)
21: DC8 (SOFTWARE)
22: EC1 (SOFTWARE)
23: EC3 (SOFTWARE)
24: EC4 (SOFTWARE)
25: EC5 (SOFTWARE)
26: EC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
GLU B:17 , LYS B:18 , ARG B:32 , HOH B:2139
BINDING SITE FOR RESIDUE SO4 B1139
02
AC4
SOFTWARE
THR B:8 , GLY B:9 , THR B:10 , HOH B:2008 , HOH B:2014 , HOH B:2145 , HOH B:2146 , GLY F:24 , ASP F:25
BINDING SITE FOR RESIDUE SO4 B1145
03
AC5
SOFTWARE
GLY B:24 , ASP B:25 , THR C:8 , GLY C:9 , THR C:10 , HOH C:2013 , HOH C:2014 , HOH C:2142 , HOH C:2143
BINDING SITE FOR RESIDUE SO4 C1139
04
AC6
SOFTWARE
GLY C:24 , ASP C:25 , HOH C:2144 , HOH C:2145 , HOH C:2146 , THR F:8 , GLY F:9 , THR F:10
BINDING SITE FOR RESIDUE SO4 C1140
05
AC7
SOFTWARE
GLU C:17 , LYS C:18 , ARG C:32 , HOH C:2147
BINDING SITE FOR RESIDUE SO4 C1141
06
BC3
SOFTWARE
GLU F:17 , LYS F:18 , ARG F:32 , HOH F:2122
BINDING SITE FOR RESIDUE SO4 F1139
07
BC6
SOFTWARE
LYS A:30 , GLN A:34 , ALA A:39 , PRO A:40 , EDO A:1146 , GLN C:47 , HOH C:2118
BINDING SITE FOR RESIDUE EDO A1143
08
BC8
SOFTWARE
ASN A:76 , ARG A:78 , HOH A:2142 , THR F:62 , ASP F:63 , GLU F:66
BINDING SITE FOR RESIDUE EDO A1145
09
BC9
SOFTWARE
ALA A:39 , PRO A:40 , EDO A:1143 , HOH A:2143 , TRP C:108 , GLY C:109
BINDING SITE FOR RESIDUE EDO A1146
10
CC2
SOFTWARE
SER B:74 , ASN B:76 , ASP B:79 , PRO B:125 , HOH B:2076 , HOH B:2140
BINDING SITE FOR RESIDUE EDO B1140
11
CC3
SOFTWARE
LYS B:30 , ALA B:39 , PRO B:40 , EDO B:1143 , GLN D:47 , HOH D:2048
BINDING SITE FOR RESIDUE EDO B1141
12
CC4
SOFTWARE
LEU B:49 , GLY B:50 , ASP B:52 , SER B:107 , HOH B:2055 , HOH B:2141
BINDING SITE FOR RESIDUE EDO B1142
13
CC5
SOFTWARE
ALA B:39 , EDO B:1141 , HOH B:2043 , HOH B:2143 , TRP D:108 , GLY D:109
BINDING SITE FOR RESIDUE EDO B1143
14
CC6
SOFTWARE
PRO B:4 , SER B:5 , GLY B:6 , HOH B:2009 , VAL F:15 , PRO F:125 , GLY F:126
BINDING SITE FOR RESIDUE EDO B1144
15
CC7
SOFTWARE
VAL B:15 , PRO B:125 , GLY B:126 , SER C:5 , GLY C:6 , HOH C:2148
BINDING SITE FOR RESIDUE EDO C1142
16
CC8
SOFTWARE
LEU C:49 , GLY C:50 , ASP C:52 , SER C:107 , HOH C:2149
BINDING SITE FOR RESIDUE EDO C1143
17
DC2
SOFTWARE
THR C:62 , ASN D:76 , ARG D:78 , EDO D:1147 , HOH D:2135
BINDING SITE FOR RESIDUE EDO D1144
18
DC3
SOFTWARE
ASN C:76 , ARG C:78 , THR D:62
BINDING SITE FOR RESIDUE EDO D1145
19
DC5
SOFTWARE
THR C:62 , ASN D:76 , ARG D:78 , EDO D:1144 , HOH D:2136
BINDING SITE FOR RESIDUE EDO D1147
20
DC6
SOFTWARE
EDO E:1146 , LYS F:102 , HOH F:2088 , HOH F:2101
BINDING SITE FOR RESIDUE EDO E 189
21
DC8
SOFTWARE
GLN E:34 , THR E:36 , ALA E:39 , EDO E:1144 , HOH E:2040 , HOH E:2045 , HOH F:2104
BINDING SITE FOR RESIDUE EDO E1142
22
EC1
SOFTWARE
ALA E:39 , EDO E:1142 , EDO E:1146 , TRP F:108 , GLY F:109
BINDING SITE FOR RESIDUE EDO E1144
23
EC3
SOFTWARE
ALA E:38 , EDO E:189 , EDO E:1144 , HOH E:2056 , ASP F:89 , TRP F:108
BINDING SITE FOR RESIDUE EDO E1146
24
EC4
SOFTWARE
SER F:74 , ASN F:76 , ASP F:79 , PRO F:124 , PRO F:125 , HOH F:2123
BINDING SITE FOR RESIDUE EDO F1140
25
EC5
SOFTWARE
TRP E:108 , GLY E:109 , HOH F:2042 , HOH F:2126
BINDING SITE FOR RESIDUE EDO F1141
26
EC6
SOFTWARE
LEU F:49 , GLY F:50 , ASP F:52 , SER F:107 , HOH F:2127
BINDING SITE FOR RESIDUE EDO F1142
[
close Site info
]
SAPs(SNPs)/Variants
(1, 3)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_DRAA_ECOLX_001 (R22Y, chain B/C/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_DRAA_ECOLX_001
*
R
43
Y
DRAA_ECOLX
---
---
B/C/F
R
22
Y
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1ut1a_ (A:)
1b: SCOP_d1ut1b_ (B:)
1c: SCOP_d1ut1c_ (C:)
1d: SCOP_d1ut1d_ (D:)
1e: SCOP_d1ut1e_ (E:)
1f: SCOP_d1ut1f_ (F:)
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(
)
(
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(
)
(
)
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(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
Bacterial adhesins
(93)
Family
:
Dr-family adhesin
(11)
Protein domain
:
DraA/Afimbrial adhesin Afa-III
(11)
Escherichia coli [TaxId: 562]
(11)
1a
d1ut1a_
A:
1b
d1ut1b_
B:
1c
d1ut1c_
C:
1d
d1ut1d_
D:
1e
d1ut1e_
E:
1f
d1ut1f_
F:
[
close SCOP info
]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1ut1B00 (B:0-138)
1b: CATH_1ut1C00 (C:0-138)
1c: CATH_1ut1D00 (D:0-138)
1d: CATH_1ut1F00 (F:0-138)
1e: CATH_1ut1A00 (A:0-139)
1f: CATH_1ut1E00 (E:0-139)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Afimbrial adhesin afa-iii.
(12)
Escherichia coli. Organism_taxid: 562. Strain: ih11128. Variant: o75:k5:h-.
(2)
1a
1ut1B00
B:0-138
1b
1ut1C00
C:0-138
1c
1ut1D00
D:0-138
1d
1ut1F00
F:0-138
1e
1ut1A00
A:0-139
1f
1ut1E00
E:0-139
[
close CATH info
]
Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Adhesin_Dr_1ut1F01 (F:2-138)
1b: PFAM_Adhesin_Dr_1ut1F02 (F:2-138)
1c: PFAM_Adhesin_Dr_1ut1F03 (F:2-138)
1d: PFAM_Adhesin_Dr_1ut1F04 (F:2-138)
1e: PFAM_Adhesin_Dr_1ut1F05 (F:2-138)
1f: PFAM_Adhesin_Dr_1ut1F06 (F:2-138)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Adhesin
(36)
Family
:
Adhesin_Dr
(9)
Escherichia coli
(9)
1a
Adhesin_Dr-1ut1F01
F:2-138
1b
Adhesin_Dr-1ut1F02
F:2-138
1c
Adhesin_Dr-1ut1F03
F:2-138
1d
Adhesin_Dr-1ut1F04
F:2-138
1e
Adhesin_Dr-1ut1F05
F:2-138
1f
Adhesin_Dr-1ut1F06
F:2-138
[
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]
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Asymmetric Unit 1
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