Chain A from PDB Type:PROTEIN Length:214
aligned with RL1_METJA | P54050 from UniProtKB/Swiss-Prot Length:219
Alignment length:214
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210
RL1_METJA 1 MDREALLQAVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAVIGTGDLAKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVPANANIKPLVERLKKTVVINTRDKPYFQVLVGNEKMTDEQIVDNIEAVLNVVAKKYEKGLYHIKDAYVKLTMGPAVKVKKE 214
SCOP domains d1u63a1 A:1-213 Ribosomal protein L1 - SCOP domains
CATH domains 1u63A01 A:1-56,A:148-214 1u63A02 A:57-147 [code=3.40.50.790, no name defined] 1u63A01 A:1-56,A:148-214 [code=3.30.190.20, no name defined] CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .hhhhhhhhhhhhhhh.........eeeeee...............eee..........eeeeehhhhhhhhhhh..eeeehhhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhhhh...hhhhh...eee.....hhhhhhhhh.eee.......eeeee......hhhhhhhhhhhhhhhhhh...........eeeee........... Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------RIBOSOMAL_L1 ----------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1u63 A 1 MDREALLQAVKEARELAKPRNFTQSFEFIATLKEIDmRKPENRIKTEVVLPHGRGKEAKIAVIGTGDLAKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLmPLIGRYmGVILGPRGKmPKPVPANANIKPLVERLKKTVVINTRDKPYFQVLVGNEKmTDEQIVDNIEAVLNVVAKKYEKGLYHIKDAYVKLTmGPAVKVKKE 214
10 20 30 | 40 50 60 70 80 90 100 110 | 120 130 140 150 160 170 180 190 200 | 210
37-MSE 112-MSE | 129-MSE 169-MSE 205-MSE
119-MSE
Chain B from PDB Type:RNA Length:49
1u63 B 1 GGGAGUGAAGGAGGCUCGCGAACUCGCGAAGCCGAGAAACUUCACUCCC 49
10 20 30 40
Chain C from PDB Type:PROTEIN Length:214
aligned with RL1_METJA | P54050 from UniProtKB/Swiss-Prot Length:219
Alignment length:214
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210
RL1_METJA 1 MDREALLQAVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAVIGTGDLAKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVPANANIKPLVERLKKTVVINTRDKPYFQVLVGNEKMTDEQIVDNIEAVLNVVAKKYEKGLYHIKDAYVKLTMGPAVKVKKE 214
SCOP domains d1u63c1 C:1-213 Ribosomal protein L1 - SCOP domains
CATH domains 1u63C01 C:1-56,C:148-214 1u63C02 C:57-147 [code=3.40.50.790, no name defined] 1u63C01 C:1-56,C:148-214 [code=3.30.190.20, no name defined] CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .hhhhhhhhhhhhhhhh.......eeeeeee.............eee............eeee.hhhhhhhhhhhh.eee..hhhhhhh...hhhhhhhhhh.eeeee...hhhhhh.....hhhhh...eee.....hhhhhhhhh...eee.....eeeeeeee...hhhhhhhhhhhhhhhhhh...........eeeee.....ee.... Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------RIBOSOMAL_L1 ----------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1u63 C 1 MDREALLQAVKEARELAKPRNFTQSFEFIATLKEIDmRKPENRIKTEVVLPHGRGKEAKIAVIGTGDLAKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLmPLIGRYmGVILGPRGKmPKPVPANANIKPLVERLKKTVVINTRDKPYFQVLVGNEKmTDEQIVDNIEAVLNVVAKKYEKGLYHIKDAYVKLTmGPAVKVKKE 214
10 20 30 | 40 50 60 70 80 90 100 110 | 120 130 140 150 160 170 180 190 200 | 210
37-MSE 112-MSE | 129-MSE 169-MSE 205-MSE
119-MSE
Chain D from PDB Type:RNA Length:49
1u63 D 1 GGGAGUGAAGGAGGCUCGCGAACUCGCGAAGCCGAGAAACUUCACUCCC 49
10 20 30 40
Legend: |
|
→ Mismatch |
(orange background) |
|
- |
→ Gap |
(green background, '-', border residues have a numbering label) |
|
|
→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
|
x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
|
extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |