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Sequence, Chains, Asymmetric and Biological Units

Title THE STRUCTURE OF A RIBOSOMAL PROTEIN L1-MRNA COMPLEX
Keywords RIBOSOME, RIBOSOMAL PROTEIN, MRNA-PROTEIN COMPLEX, TRANSCRIP COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1U63     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    B 49 1055 0
2  RNA    D 49 1055 0
3  Protein   50S RIBOSOMAL PROTEIN L1P  A 214 1652 48
4  Protein   50S RIBOSOMAL PROTEIN L1P  C 214 1652 48
total       526 5414 96

Proteins
Unit 3 MET1 ASP2 ARG3 GLU4 ALA5 LEU6 LEU7 GLN8 ALA9 VAL10 LYS11 GLU12 ALA13 ARG14 GLU15 LEU16 ALA17 LYS18 PRO19 ARG20 ASN21 PHE22 THR23 GLN24 SER25 PHE26 GLU27 PHE28 ILE29 ALA30 THR31 LEU32 LYS33 GLU34 ILE35 ASP36 MSE37 ARG38 LYS39 PRO40 GLU41 ASN42 ARG43 ILE44 LYS45 THR46 GLU47 VAL48 VAL49 LEU50 PRO51 HIS52 GLY53 ARG54 GLY55 LYS56 GLU57 ALA58 LYS59 ILE60 ALA61 VAL62 ILE63 GLY64 THR65 GLY66 ASP67 LEU68 ALA69 LYS70 GLN71 ALA72 GLU73 GLU74 LEU75 GLY76 LEU77 THR78 VAL79 ILE80 ARG81 LYS82 GLU83 GLU84 ILE85 GLU86 GLU87 LEU88 GLY89 LYS90 ASN91 LYS92 ARG93 LYS94 LEU95 ARG96 LYS97 ILE98 ALA99 LYS100 ALA101 HIS102 ASP103 PHE104 PHE105 ILE106 ALA107 GLN108 ALA109 ASP110 LEU111 MSE112 PRO113 LEU114 ILE115 GLY116 ARG117 TYR118 MSE119 GLY120 VAL121 ILE122 LEU123 GLY124 PRO125 ARG126 GLY127 LYS128 MSE129 PRO130 LYS131 PRO132 VAL133 PRO134 ALA135 ASN136 ALA137 ASN138 ILE139 LYS140 PRO141 LEU142 VAL143 GLU144 ARG145 LEU146 LYS147 LYS148 THR149 VAL150 VAL151 ILE152 ASN153 THR154 ARG155 ASP156 LYS157 PRO158 TYR159 PHE160 GLN161 VAL162 LEU163 VAL164 GLY165 ASN166 GLU167 LYS168 MSE169 THR170 ASP171 GLU172 GLN173 ILE174 VAL175 ASP176 ASN177 ILE178 GLU179 ALA180 VAL181 LEU182 ASN183 VAL184 VAL185 ALA186 LYS187 LYS188 TYR189 GLU190 LYS191 GLY192 LEU193 TYR194 HIS195 ILE196 LYS197 ASP198 ALA199 TYR200 VAL201 LYS202 LEU203 THR204 MSE205 GLY206 PRO207 ALA208 VAL209 LYS210 VAL211 LYS212 LYS213 GLU214
Unit 4 MET1 ASP2 ARG3 GLU4 ALA5 LEU6 LEU7 GLN8 ALA9 VAL10 LYS11 GLU12 ALA13 ARG14 GLU15 LEU16 ALA17 LYS18 PRO19 ARG20 ASN21 PHE22 THR23 GLN24 SER25 PHE26 GLU27 PHE28 ILE29 ALA30 THR31 LEU32 LYS33 GLU34 ILE35 ASP36 MSE37 ARG38 LYS39 PRO40 GLU41 ASN42 ARG43 ILE44 LYS45 THR46 GLU47 VAL48 VAL49 LEU50 PRO51 HIS52 GLY53 ARG54 GLY55 LYS56 GLU57 ALA58 LYS59 ILE60 ALA61 VAL62 ILE63 GLY64 THR65 GLY66 ASP67 LEU68 ALA69 LYS70 GLN71 ALA72 GLU73 GLU74 LEU75 GLY76 LEU77 THR78 VAL79 ILE80 ARG81 LYS82 GLU83 GLU84 ILE85 GLU86 GLU87 LEU88 GLY89 LYS90 ASN91 LYS92 ARG93 LYS94 LEU95 ARG96 LYS97 ILE98 ALA99 LYS100 ALA101 HIS102 ASP103 PHE104 PHE105 ILE106 ALA107 GLN108 ALA109 ASP110 LEU111 MSE112 PRO113 LEU114 ILE115 GLY116 ARG117 TYR118 MSE119 GLY120 VAL121 ILE122 LEU123 GLY124 PRO125 ARG126 GLY127 LYS128 MSE129 PRO130 LYS131 PRO132 VAL133 PRO134 ALA135 ASN136 ALA137 ASN138 ILE139 LYS140 PRO141 LEU142 VAL143 GLU144 ARG145 LEU146 LYS147 LYS148 THR149 VAL150 VAL151 ILE152 ASN153 THR154 ARG155 ASP156 LYS157 PRO158 TYR159 PHE160 GLN161 VAL162 LEU163 VAL164 GLY165 ASN166 GLU167 LYS168 MSE169 THR170 ASP171 GLU172 GLN173 ILE174 VAL175 ASP176 ASN177 ILE178 GLU179 ALA180 VAL181 LEU182 ASN183 VAL184 VAL185 ALA186 LYS187 LYS188 TYR189 GLU190 LYS191 GLY192 LEU193 TYR194 HIS195 ILE196 LYS197 ASP198 ALA199 TYR200 VAL201 LYS202 LEU203 THR204 MSE205 GLY206 PRO207 ALA208 VAL209 LYS210 VAL211 LYS212 LYS213 GLU214

Nucleic acids
Unit 1 G1 G2 G3 A4 G5 U6 G7 A8 A9 G10 G11 A12 G13 G14 C15 U16 C17 G18 C19 G20 A21 A22 C23 U24 C25 G26 C27 G28 A29 A30 G31 C32 C33 G34 A35 G36 A37 A38 A39 C40 U41 U42 C43 A44 C45 U46 C47 C48 C49
Unit 2 G1 G2 G3 A4 G5 U6 G7 A8 A9 G10 G11 A12 G13 G14 C15 U16 C17 G18 C19 G20 A21 A22 C23 U24 C25 G26 C27 G28 A29 A30 G31 C32 C33 G34 A35 G36 A37 A38 A39 C40 U41 U42 C43 A44 C45 U46 C47 C48 C49

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany