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Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE SHIFTED FORM OF THE GLUCOSE-FRUCTOSE OXIDOREDUCTASE FROM ZYMOMONAS MOBILIS

Authors :   Y. Kim, M. Arora, M. Straza, M. Donnelly, A. Joachimiak

Date :   22 Dec 03 (Deposition) - 15 Feb 05 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Glucose, Fructose, Oxidoreductase Shifted Form, Nadp, Zymomonas Mobilis, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Kim, M. Arora, M. Straza, M. Donnelly, A. Joachimiak
Crystal Structure Of The Shifted Form Of The Glucose-Fructose Oxidoreductase From Zymomonas Mobilis
To Be Published
PubMed: search

Molecule 1 - GLUCOSE-FRUCTOSE OXIDOREDUCTASE
	Chains	:	A, B, C, D
	EC Number	:	1.1.99.28
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Scientific	:	ZYMOMONAS MOBILIS
	Organism Taxid	:	542

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 8)

No.	Name	Count	Type	Full Name
1	BME	1	Ligand/Ion	BETA-MERCAPTOETHANOL
2	GOL	3	Ligand/Ion	GLYCEROL
3	NDP	4	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:38 , LEU A:39 , GLY A:40 , LYS A:41 , TYR A:42 , SER A:64 , GLY A:65 , LYS A:69 , TYR A:87 , ILE A:105 , LEU A:106 , PRO A:107 , ASN A:108 , HIS A:111 , GLU A:128 , LYS A:129 , GLY A:155 , ARG A:157 , ALA A:196 , TRP A:199 , ARG A:200 , TYR A:217 , TYR A:296 , HOH A:606 , HOH A:622 , HOH A:637 , HOH A:641 , HOH A:644 , HOH A:645 , PRO D:11 , THR D:13 , PRO D:14 , ALA D:15 , GLY D:16 , ARG D:17	BINDING SITE FOR RESIDUE NDP A 500
2	AC2	SOFTWARE	LEU B:39 , GLY B:40 , LYS B:41 , TYR B:42 , SER B:64 , GLY B:65 , LYS B:69 , TYR B:87 , ILE B:105 , LEU B:106 , PRO B:107 , ASN B:108 , LEU B:110 , HIS B:111 , GLU B:128 , LYS B:129 , ARG B:157 , TRP B:199 , ARG B:200 , TYR B:217 , TYR B:296 , HOH B:624	BINDING SITE FOR RESIDUE NDP B 501
3	AC3	SOFTWARE	VAL B:10 , PRO B:11 , THR B:13 , PRO B:14 , ALA B:15 , GLY B:16 , ARG B:17 , GLY C:38 , LEU C:39 , GLY C:40 , LYS C:41 , TYR C:42 , SER C:64 , GLY C:65 , LYS C:69 , TYR C:87 , ILE C:105 , LEU C:106 , PRO C:107 , ASN C:108 , LEU C:110 , HIS C:111 , GLU C:128 , LYS C:129 , ARG C:157 , ALA C:196 , TRP C:199 , ARG C:200 , ASP C:213 , TYR C:217 , TYR C:296 , HOH C:509	BINDING SITE FOR RESIDUE NDP C 502
4	AC4	SOFTWARE	LEU D:39 , GLY D:40 , LYS D:41 , TYR D:42 , SER D:64 , GLY D:65 , LYS D:69 , TYR D:87 , ILE D:105 , LEU D:106 , PRO D:107 , ASN D:108 , HIS D:111 , GLU D:128 , LYS D:129 , GLY D:155 , ARG D:157 , TRP D:199 , ARG D:200 , TYR D:217 , GOL D:602 , HOH D:604 , HOH D:653 , HOH D:678 , HOH D:679	BINDING SITE FOR RESIDUE NDP D 503
5	AC5	SOFTWARE	SER A:272 , GLY B:180	BINDING SITE FOR RESIDUE BME A 604
6	AC6	SOFTWARE	GLY A:366 , ARG B:234 , PRO B:368	BINDING SITE FOR RESIDUE GOL B 601
7	AC7	SOFTWARE	LYS D:129 , ARG D:200 , ASP D:213 , TYR D:217 , NDP D:503	BINDING SITE FOR RESIDUE GOL D 602
8	AC8	SOFTWARE	SER A:239 , PHE A:246 , VAL A:249 , HOH A:638 , HOH A:679	BINDING SITE FOR RESIDUE GOL A 603

(no "SS Bond" information available for 1RYE)

Asymmetric/Biological Unit

No.	Residues
1	Lys A:129	-	Pro A:130
2	Asp A:291	-	Pro A:292
3	Lys B:129	-	Pro B:130
4	Asp B:291	-	Pro B:292
5	Met B:319	-	Pro B:320
6	Lys C:129	-	Pro C:130
7	Asp C:291	-	Pro C:292
8	Lys D:129	-	Pro D:130
9	Asp D:291	-	Pro D:292

(no "SAP(SNP)/Variant" information available for 1RYE)

(no "PROSITE Motif" information available for 1RYE)

(no "Exon" information available for 1RYE)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:343
 aligned with GFO_ZYMMO | Q07982 from UniProtKB/Swiss-Prot  Length:433

    Alignment length:356
                                    87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427      
            GFO_ZYMMO    78 MPEDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIRENQLGKLGMVTTDNSDVMDQNDPAQQWRLRRELAGGGSLMDIGIYGLNGTRYLLGEEPIEVRAYTYSDPNDERFVEVEDRIIWQMRFRSGALSHGASSYSTTTTSRFSVQGDKAVLLMDPATGYYQNLISVQTPGHANQSMMPQFIMPANNQFSAQLDHLAEAVINNKPVRSPGEEGMQDVRLIQAIYEAARTGRPVNTDWGYVRQGGY 433
               SCOP domains ----d1ryea1 A:30-160,A:323-381 Glucose-fructose oxidoreductase, N-terminal domain                                                      d1ryea2 A:161-322 Glucose-fructose oxidoreductase                                                                                                                 d1ryea1 A:30-160,A:323-381                                  SCOP domains
               CATH domains 1ryeA01 A:26-160,A:320-345 NAD(P)-binding Rossmann-like Domain                                                                         1ryeA02 A:161-306,A:346-381 Dihydrodipicolinate Reductase; domain 2                                                                               -------------1ryeA01 A:26-160,A:320-3451ryeA02 A:161-306,A:346-381          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee..hhhhhhhhhhhhh.....eeeeee..hhhhhhhhhhhhh.hhh.ee...hhhhhhhh....eeee..hhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhhhh.....eeeeeeeee......hhhhhh..hhhhhh.hhhhhhhhhhhhhhhhhhh..eeeeeeeee....hhhhh....eeeeeeee....eeeeeee.....eeeeeeee...eeee..........eeee..-------------...hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh..ee........... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rye A  26 MPEDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIRENQLGKLGMVTTDNSDVMDQNDPAQQWRLRRELAGGGSLMDIGIYGLNGTRYLLGEEPIEVRAYTYSDPNDERFVEVEDRIIWQMRFRSGALSHGASSYSTTTTSRFSVQGDKAVLLMDPATGYYQNLISVQTP-------------PANNQFSAQLDHLAEAVINNKPVRSPGEEGMQDVRLIQAIYEAARTGRPVNTDWGYVRQGGY 381
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305|        -    |  325       335       345       355       365       375      
                                                                                                                                                                                                                                                                                                                  306           320

Chain B from PDB  Type:PROTEIN  Length:371
 aligned with GFO_ZYMMO | Q07982 from UniProtKB/Swiss-Prot  Length:433

    Alignment length:381
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432 
            GFO_ZYMMO    53 ATLPAGASQVPTTPAGRPMPYAIRPMPEDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIRENQLGKLGMVTTDNSDVMDQNDPAQQWRLRRELAGGGSLMDIGIYGLNGTRYLLGEEPIEVRAYTYSDPNDERFVEVEDRIIWQMRFRSGALSHGASSYSTTTTSRFSVQGDKAVLLMDPATGYYQNLISVQTPGHANQSMMPQFIMPANNQFSAQLDHLAEAVINNKPVRSPGEEGMQDVRLIQAIYEAARTGRPVNTDWGYVRQGGY 433
               SCOP domains -----------------------      d1ryeb1 B:30-160,B:323-381 Glucose-fructose oxidoreductase, N-terminal domain                                                      d1ryeb2 B:161-322 Glucose-fructose oxidoreductase                                                                                                                 d1ryeb1 B:30-160,B:323-381                                  SCOP domains
               CATH domains ---------------1ryeB01       B:16-160,B:319-345 NAD(P)-binding Rossmann-like Domain                                                                             1ryeB02 B:161-314,B:346-381 Dihydrodipicolinate Reductase; domain 2                                                                                           1ryeB01 B:16-160,B:319-345 1ryeB02 B:161-314,B:346-381          CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhh..............------..eeeeee..hhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhh.....ee..hhhhhhhh.....eeee..hhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhh.....eeeeeeeee......hhhhh...hhhhhh.hhhhhhhhhhhhhhhhhhh..eeeeeeeee....hhhhh....eeeeeeee....eeeeeee.....eeeeeeee...eeee..........eeee.....eeee.----....hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh..ee........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rye B   1 ATLPAGASQVPTTPAGRPMPYAI------RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIRENQLGKLGMVTTDNSDVMDQNDPAQQWRLRRELAGGGSLMDIGIYGLNGTRYLLGEEPIEVRAYTYSDPNDERFVEVEDRIIWQMRFRSGALSHGASSYSTTTTSRFSVQGDKAVLLMDPATGYYQNLISVQTPGHANQSMM----MPANNQFSAQLDHLAEAVINNKPVRSPGEEGMQDVRLIQAIYEAARTGRPVNTDWGYVRQGGY 381
                                    10        20  |     30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310   |   320       330       340       350       360       370       380 
                                                 23     30                                                                                                                                                                                                                                                                                         314  319

Chain C from PDB  Type:PROTEIN  Length:339
 aligned with GFO_ZYMMO | Q07982 from UniProtKB/Swiss-Prot  Length:433

    Alignment length:352
                                    91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431  
            GFO_ZYMMO    82 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIRENQLGKLGMVTTDNSDVMDQNDPAQQWRLRRELAGGGSLMDIGIYGLNGTRYLLGEEPIEVRAYTYSDPNDERFVEVEDRIIWQMRFRSGALSHGASSYSTTTTSRFSVQGDKAVLLMDPATGYYQNLISVQTPGHANQSMMPQFIMPANNQFSAQLDHLAEAVINNKPVRSPGEEGMQDVRLIQAIYEAARTGRPVNTDWGYVRQGGY 433
               SCOP domains d1ryec1 C:30-160,C:323-381 Glucose-fructose oxidoreductase, N-terminal domain                                                      d1ryec2 C:161-322 Glucose-fructose oxidoreductase                                                                                                                 d1ryec1 C:30-160,C:323-381                                  SCOP domains
               CATH domains 1ryeC01 C:30-160,C:320-345 NAD(P)-binding Rossmann-like Domain                                                                     1ryeC02 C:161-306,C:346-381 Dihydrodipicolinate Reductase; domain 2                                                                               -------------1ryeC01 C:30-160,C:320-3451ryeC02 C:161-306,C:346-381          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhh..hhh.ee..hhhhhhhh.....eeee..hhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhh.....eeeeeeeee......hhhhhh..hhhhhh.hhhhhhhhhhhhhhhhhhh..eeeeeeeee....hhhhh....eeeeeeee....eeeeeee.....eeeeeeee...eeee..........eeee..-------------...hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh..ee........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rye C  30 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIRENQLGKLGMVTTDNSDVMDQNDPAQQWRLRRELAGGGSLMDIGIYGLNGTRYLLGEEPIEVRAYTYSDPNDERFVEVEDRIIWQMRFRSGALSHGASSYSTTTTSRFSVQGDKAVLLMDPATGYYQNLISVQTP-------------PANNQFSAQLDHLAEAVINNKPVRSPGEEGMQDVRLIQAIYEAARTGRPVNTDWGYVRQGGY 381
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299      |  -         -|      329       339       349       359       369       379  
                                                                                                                                                                                                                                                                                                              306           320

Chain D from PDB  Type:PROTEIN  Length:370
 aligned with GFO_ZYMMO | Q07982 from UniProtKB/Swiss-Prot  Length:433

    Alignment length:381
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432 
            GFO_ZYMMO    53 ATLPAGASQVPTTPAGRPMPYAIRPMPEDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIRENQLGKLGMVTTDNSDVMDQNDPAQQWRLRRELAGGGSLMDIGIYGLNGTRYLLGEEPIEVRAYTYSDPNDERFVEVEDRIIWQMRFRSGALSHGASSYSTTTTSRFSVQGDKAVLLMDPATGYYQNLISVQTPGHANQSMMPQFIMPANNQFSAQLDHLAEAVINNKPVRSPGEEGMQDVRLIQAIYEAARTGRPVNTDWGYVRQGGY 433
               SCOP domains -----------------------      d1ryed1 D:30-160,D:323-381 Glucose-fructose oxidoreductase, N-terminal domain                                                      d1ryed2 D:161-322 Glucose-fructose oxidoreductase                                                                                                                 d1ryed1 D:30-160,D:323-381                                  SCOP domains
               CATH domains ---------------1ryeD01       D:16-160,D:320-345 NAD(P)-binding Rossmann-like Domain                                                                             1ryeD02 D:161-314,D:346-381 Dihydrodipicolinate Reductase; domain 2                                                                                            1ryeD01 D:16-160,D:320-3451ryeD02 D:161-314,D:346-381          CATH domains
           Pfam domains (1) -------------------------------GFO_IDH_MocA-1ryeD01 D:32-156                                                                                                -----------GFO_IDH_MocA_C-1ryeD05 D:168-282                                                                                   --------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) -------------------------------GFO_IDH_MocA-1ryeD02 D:32-156                                                                                                -----------GFO_IDH_MocA_C-1ryeD06 D:168-282                                                                                   --------------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) -------------------------------GFO_IDH_MocA-1ryeD03 D:32-156                                                                                                -----------GFO_IDH_MocA_C-1ryeD07 D:168-282                                                                                   --------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) -------------------------------GFO_IDH_MocA-1ryeD04 D:32-156                                                                                                -----------GFO_IDH_MocA_C-1ryeD08 D:168-282                                                                                   --------------------------------------------------------------------------------------------------- Pfam domains (4)
         Sec.struct. author ...hhhhhhh.............------..eeeeee..hhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhh.....ee..hhhhhhhhh....eeee..hhhhhhhhhhhhhhh..eeee......hhhhhhhhhhhhhhh...eee.hhhhhhhhhhhhhhhhhh.....eeeeeeeee......hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..eeeeeeeee....hhhhh....eeeeeeee....eeeeeee.....eeeeeeee...eeee..........eeee.....eee..-----...hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh..ee........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rye D   1 ATLPAGASQVPTTPAGRPMPYAI------RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIRENQLGKLGMVTTDNSDVMDQNDPAQQWRLRRELAGGGSLMDIGIYGLNGTRYLLGEEPIEVRAYTYSDPNDERFVEVEDRIIWQMRFRSGALSHGASSYSTTTTSRFSVQGDKAVLLMDPATGYYQNLISVQTPGHANQSMM-----PANNQFSAQLDHLAEAVINNKPVRSPGEEGMQDVRLIQAIYEAARTGRPVNTDWGYVRQGGY 381
                                    10        20  |     30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310   |   320       330       340       350       360       370       380 
                                                 23     30                                                                                                                                                                                                                                                                                         314   320

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Dihydrodipicolinate Reductase; domain 2 (182)

Homologous Superfamily: Dihydrodipicolinate Reductase; domain 2 (178)

Zymomonas mobilis. Organism_taxid: 542. (7)

1a	1ryeA02	A:161-306,A:346-381
1b	1ryeC02	C:161-306,C:346-381
1c	1ryeB02	B:161-314,B:346-381
1d	1ryeD02	D:161-314,D:346-381

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: NAD(P)-binding Rossmann-like Domain (1244)

Zymomonas mobilis. Organism_taxid: 542. (7)

2a	1ryeD01	D:16-160,D:320-345
2b	1ryeA01	A:26-160,A:320-345
2c	1ryeC01	C:30-160,C:320-345
2d	1ryeB01	B:16-160,B:319-345

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: NADP_Rossmann (1239)

Family: GFO_IDH_MocA (25)

Zymomonas mobilis (3)

1a	GFO_IDH_MocA-1ryeD01	D:32-156
1b	GFO_IDH_MocA-1ryeD02	D:32-156
1c	GFO_IDH_MocA-1ryeD03	D:32-156
1d	GFO_IDH_MocA-1ryeD04	D:32-156

Clan: ox_reductase_C (19)

Family: GFO_IDH_MocA_C (19)

Zymomonas mobilis (3)

2a	GFO_IDH_MocA_C-1ryeD05	D:168-282
2b	GFO_IDH_MocA_C-1ryeD06	D:168-282
2c	GFO_IDH_MocA_C-1ryeD07	D:168-282
2d	GFO_IDH_MocA_C-1ryeD08	D:168-282

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D (GFO_ZYMMO | Q07982)

molecular function
	GO:0047061	glucose-fructose oxidoreductase activity	Catalysis of the reaction: D-fructose + D-glucose = D-glucitol + D-glucono-1,5-lactone.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0006061	sorbitol biosynthetic process	The chemical reactions and pathways resulting in the formation of sorbitol (D-glucitol), one of the ten stereoisomeric hexitols. It can be derived from glucose by reduction of the aldehyde group.
cellular component
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Asymmetric/Biological Unit
	Complete Structure
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	Ligands, Modified Residues, Ions
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	Sites
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		AC2	[ RasMol ]	+environment [ RasMol ]
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	Cis Peptide Bonds
		Asp A:291 - Pro A:292	[ RasMol ]
		Asp B:291 - Pro B:292	[ RasMol ]
		Asp C:291 - Pro C:292	[ RasMol ]
		Asp D:291 - Pro D:292	[ RasMol ]
		Lys A:129 - Pro A:130	[ RasMol ]
		Lys B:129 - Pro B:130	[ RasMol ]
		Lys C:129 - Pro C:130	[ RasMol ]
		Lys D:129 - Pro D:130	[ RasMol ]
		Met B:319 - Pro B:320	[ RasMol ]

Jmol
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Access by PDB/NDB ID
	1rye
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	GFO_ZYMMO \| Q07982
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	1.1.99.28
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

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	(no 'MIM ID' available)
		Disease Information	:	OMIM

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		Age Related Information	:	GenAge

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		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
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Access by UniProt ID/Accession number
	GFO_ZYMMO \| Q07982
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	GFO_ZYMMO \| Q07982	:	1evj 1h6a 1h6b 1h6c 1h6d 1ofg 1ryd

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 8)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (9, 9)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 8)

CATH Domains (2, 8)

Pfam Domains (2, 8)

Gene Ontology (6, 6)

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Still Images

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Databases

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File