1H6A - JenaLib

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Title :   REDUCED PRECURSOR FORM OF GLUCOSE-FRUCTOSE OXIDOREDUCTASE FROM ZYMOMONAS MOBILIS

Authors :   D. Nurizzo, E. N. Baker

Date :   11 Jun 01 (Deposition) - 28 Nov 01 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (2x)

Keywords :   Protein Translocation, Periplasmic Oxidoreductase, Signal Peptide, Ligand Binding, Crystal Structure (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. Nurizzo, D. Halbig, G. Sprenger, E. N. Baker
Crystal Structures Of The Precursor Form Of Glucose-Fructose Oxidoreductase From Zymomonas Mobilis And Its Complexes With Bound Ligands(, )
Biochemistry V. 40 13857 2001
PubMed-ID: 11705375 | Reference-DOI: 10.1021/BI011355D

Molecule 1 - PRECURSOR FORM OF GLUCOSE-FRUCTOSE OXIDOREDUCTASE
	Chains	:	A, B
	EC Number	:	1.1.99.28
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Scientific	:	ZYMOMONAS MOBILIS
	Organism Taxid	:	542
	Other Details	:	NADP

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (2x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	NDP	2	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

Biological Unit 1 (1, 4)

No.	Name	Count	Type	Full Name
1	NDP	4	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	VAL A:62 , PRO A:63 , THR A:65 , PRO A:66 , ALA A:67 , GLY A:68 , ARG A:69 , GLY A:90 , LEU A:91 , GLY A:92 , LYS A:93 , TYR A:94 , SER A:116 , GLY A:117 , LYS A:121 , TYR A:139 , ILE A:157 , LEU A:158 , PRO A:159 , ASN A:160 , LEU A:162 , HIS A:163 , GLU A:180 , LYS A:181 , ARG A:209 , ALA A:248 , TRP A:251 , ARG A:252 , TYR A:269 , TYR A:348 , HOH A:2011 , HOH A:2211 , HOH A:2212 , HOH A:2213	BINDING SITE FOR RESIDUE NDP A 500
2	AC2	SOFTWARE	VAL B:62 , PRO B:63 , THR B:65 , PRO B:66 , ALA B:67 , ARG B:69 , GLY B:90 , LEU B:91 , GLY B:92 , LYS B:93 , TYR B:94 , SER B:116 , GLY B:117 , ASN B:118 , LYS B:121 , TYR B:139 , ILE B:157 , LEU B:158 , PRO B:159 , ASN B:160 , LEU B:162 , HIS B:163 , GLU B:180 , LYS B:181 , ARG B:209 , ALA B:248 , TRP B:251 , ARG B:252 , TYR B:269 , HOH B:2011	BINDING SITE FOR RESIDUE NDP B 500

(no "SS Bond" information available for 1H6A)

Asymmetric Unit

No.	Residues
1	Lys A:181	-	Pro A:182
2	Asp A:343	-	Pro A:344
3	Lys B:181	-	Pro B:182
4	Asp B:343	-	Pro B:344

(no "SAP(SNP)/Variant" information available for 1H6A)

(no "PROSITE Motif" information available for 1H6A)

(no "Exon" information available for 1H6A)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:381
 aligned with GFO_ZYMMO | Q07982 from UniProtKB/Swiss-Prot  Length:433

    Alignment length:381
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432 
            GFO_ZYMMO    53 ATLPAGASQVPTTPAGRPMPYAIRPMPEDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIRENQLGKLGMVTTDNSDVMDQNDPAQQWRLRRELAGGGSLMDIGIYGLNGTRYLLGEEPIEVRAYTYSDPNDERFVEVEDRIIWQMRFRSGALSHGASSYSTTTTSRFSVQGDKAVLLMDPATGYYQNLISVQTPGHANQSMMPQFIMPANNQFSAQLDHLAEAVINNKPVRSPGEEGMQDVRLIQAIYEAARTGRPVNTDWGYVRQGGY 433
               SCOP domains d1h6aa1 A:53-212,A:375-433 Glucose-fructose oxidoreductase, N-terminal domain                                                                                   d1h6aa2 A:213-374 Glucose-fructose oxidoreductase                                                                                                                 d1h6aa1 A:53-212,A:375-433                                  SCOP domains
               CATH domains ---------------------1h6aA01 A:74-212,A:367-397 NAD(P)-binding Rossmann-like Domain                                                                             1h6aA02 A:213-366,A:398-433 Dihydrodipicolinate Reductase; domain 2                                                                                       1h6aA01 A:74-212,A:367-397     1h6aA02 A:213-366,A:398-433          CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhh......................eeeeee..hhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhh..hhh.ee...hhhhhhhh....eeee..hhhhhhhhhhhhhhh..eeee......hhhhhhhhhhhhhhhh..eee.hhhhhhhhhhhhhhhhhh.....eeeeeeeee......hhhhhh..hhhhhh.hhhhhhhhhhhhhhhhhhh..eeeeeeeee....hhhhh....eeeeeeee....eeeeeee.....eeeeeeee...eeee..........eeeee..eeeee..........hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh..ee........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1h6a A  53 ATLPAGASQVPTTPAGRPMPYAIRPMPEDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIRENQLGKLGMVTTDNSDVMDQNDPAQQWRLRRELAGGGSLMDIGIYGLNGTRYLLGEEPIEVRAYTYSDPNDERFVEVEDRIIWQMRFRSGALSHGASSYSTTTTSRFSVQGDKAVLLMDPATGYYQNLISVQTPGHANQSMMPQFIMPANNQFSAQLDHLAEAVINNKPVRSPGEEGMQDVRLIQAIYEAARTGRPVNTDWGYVRQGGY 433
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432

Chain B from PDB  Type:PROTEIN  Length:381
 aligned with GFO_ZYMMO | Q07982 from UniProtKB/Swiss-Prot  Length:433

    Alignment length:381
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432 
            GFO_ZYMMO    53 ATLPAGASQVPTTPAGRPMPYAIRPMPEDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIRENQLGKLGMVTTDNSDVMDQNDPAQQWRLRRELAGGGSLMDIGIYGLNGTRYLLGEEPIEVRAYTYSDPNDERFVEVEDRIIWQMRFRSGALSHGASSYSTTTTSRFSVQGDKAVLLMDPATGYYQNLISVQTPGHANQSMMPQFIMPANNQFSAQLDHLAEAVINNKPVRSPGEEGMQDVRLIQAIYEAARTGRPVNTDWGYVRQGGY 433
               SCOP domains d1h6ab1 B:53-212,B:375-433 Glucose-fructose oxidoreductase, N-terminal domain                                                                                   d1h6ab2 B:213-374 Glucose-fructose oxidoreductase                                                                                                                 d1h6ab1 B:53-212,B:375-433                                  SCOP domains
               CATH domains ---------------------1h6aB01 B:74-212,B:367-397 NAD(P)-binding Rossmann-like Domain                                                                             1h6aB02 B:213-366,B:398-433 Dihydrodipicolinate Reductase; domain 2                                                                                       1h6aB01 B:74-212,B:367-397     1h6aB02 B:213-366,B:398-433          CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhh......................eeeeee..hhhhhhhhhhhh.....eeeeeee..hhhhhhhhhhhh..hhh.ee...hhhhhhhh....eeee..hhhhhhhhhhhhhhh..eeee......hhhhhhhhhhhhhhh...eee.hhhhhhhhhhhhhhhhhh.......eeeeeee......hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..eeeeeeeee....hhhhh....eeeeeeee....eeeeeee.....eeeeeee....eeee..........eeeee..eeeee..........hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh..ee........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1h6a B  53 ATLPAGASQVPTTPAGRPMPYAIRPMPEDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIRENQLGKLGMVTTDNSDVMDQNDPAQQWRLRRELAGGGSLMDIGIYGLNGTRYLLGEEPIEVRAYTYSDPNDERFVEVEDRIIWQMRFRSGALSHGASSYSTTTTSRFSVQGDKAVLLMDPATGYYQNLISVQTPGHANQSMMPQFIMPANNQFSAQLDHLAEAVINNKPVRSPGEEGMQDVRLIQAIYEAARTGRPVNTDWGYVRQGGY 433
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Dihydrodipicolinate Reductase; domain 2 (182)

Homologous Superfamily: Dihydrodipicolinate Reductase; domain 2 (178)

Zymomonas mobilis. Organism_taxid: 542. (7)

1a	1h6aA02	A:213-366,A:398-433
1b	1h6aB02	B:213-366,B:398-433

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: NAD(P)-binding Rossmann-like Domain (1244)

Zymomonas mobilis. Organism_taxid: 542. (7)

2a	1h6aA01	A:74-212,A:367-397
2b	1h6aB01	B:74-212,B:367-397

(no "Pfam Domain" information available for 1H6A)

Asymmetric Unit(hide GO term definitions)

Chain A,B (GFO_ZYMMO | Q07982)

molecular function
	GO:0047061	glucose-fructose oxidoreductase activity	Catalysis of the reaction: D-fructose + D-glucose = D-glucitol + D-glucono-1,5-lactone.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0006061	sorbitol biosynthetic process	The chemical reactions and pathways resulting in the formation of sorbitol (D-glucitol), one of the ten stereoisomeric hexitols. It can be derived from glucose by reduction of the aldehyde group.
cellular component
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Asymmetric Unit
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	Cis Peptide Bonds
		Asp A:343 - Pro A:344	[ RasMol ]
		Asp B:343 - Pro B:344	[ RasMol ]
		Lys A:181 - Pro A:182	[ RasMol ]
		Lys B:181 - Pro B:182	[ RasMol ]

Biological Unit
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		Biological Unit 1	[ Jena3D ]

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Access by PDB/NDB ID
	1h6a
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	GFO_ZYMMO \| Q07982
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	1.1.99.28
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	GFO_ZYMMO \| Q07982
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UniProtKB/Swiss-Prot
	GFO_ZYMMO \| Q07982	:	1evj 1h6b 1h6c 1h6d 1ofg 1ryd 1rye

1evj	CRYSTAL STRUCTURE OF GLUCOSE-FRUCTOSE OXIDOREDUCTASE (GFOR) DELTA1-22 S64D
1h6b	REDUCED PRECURSOR FORM OF GLUCOSE-FRUCTOSE OXIDOREDUCTASE FROM ZYMOMONAS MOBILIS COMPLEXED WITH GLYCEROL
1h6c	OXIDIZED PRECURSOR FORM OF GLUCOSE-FRUCTOSE OXIDOREDUCTASE FROM ZYMOMONAS MOBILIS COMPLEXED WITH SUCCINATE
1h6d	OXIDIZED PRECURSOR FORM OF GLUCOSE-FRUCTOSE OXIDOREDUCTASE FROM ZYMOMONAS MOBILIS COMPLEXED WITH GLYCEROL
1ofg	GLUCOSE-FRUCTOSE OXIDOREDUCTASE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 4)

CATH Domains (2, 4)

Pfam Domains (0, 0)

Gene Ontology (6, 6)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File