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(-) Description

Title :  AN ASYMMETRIC NFAT1-RHR HOMODIMER ON A PSEUDO-PALINDROMIC, KAPPA-B SITE
 
Authors :  L. Jin, P. Sliz, L. Chen, F. Macian, A. Rao, P. G. Hogan, S. C. Harrison
Date :  14 Jul 03  (Deposition) - 09 Sep 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym. Unit :  B,D,H,I,L,M,T,V,W,X,Y,Z
Biol. Unit 1:  B,D,T,W  (1x)
Biol. Unit 2:  H,I,V,Z  (1x)
Biol. Unit 3:  L,M,X,Y  (1x)
Keywords :  Transcription Factor, Nfat1-Rhr Homodimer, Protein-Dna Complex, Human Il8 Promoter, Transcription/Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  L. Jin, P. Sliz, L. Chen, F. Macian, A. Rao, P. G. Hogan, S. C. Harrison
An Asymmetric Nfat1 Dimer On A Pseudo-Palindromic Kb-Like Dna Site
Nat. Struct. Biol. V. 10 807 2003
PubMed-ID: 12949491  |  Reference-DOI: 10.1038/NSB975
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(*TP*TP*GP*AP*GP*GP*AP*AP*TP*TP*TP*CP*CP*A)- 3'
    ChainsX, V, T
    EngineeredYES
    SyntheticYES
 
Molecule 2 - 5'-D(*AP*AP*TP*GP*GP*AP*AP*AP*TP*TP*CP*CP*TP*C)- 3'
    ChainsY, Z, W
    EngineeredYES
    SyntheticYES
 
Molecule 3 - NUCLEAR FACTOR OF ACTIVATED T-CELLS, CYTOPLASMIC 2
    ChainsB, D, H, I, L, M
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPLM1
    Expression System StrainBL21 (DE3)
    Expression System Taxid469008
    FragmentNFAT1 DNA-BINDING DOMAIN
    GeneNFAT1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymT CELL TRANSCRIPTION FACTOR NFAT1, NFAT PRE- EXISTING SUBUNIT, NF-ATP, RHR

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit BDHILMTVWXYZ
Biological Unit 1 (1x)BD    T W   
Biological Unit 2 (1x)  HI   V   Z
Biological Unit 3 (1x)    LM   XY 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1PZU)

(-) Sites  (0, 0)

(no "Site" information available for 1PZU)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1PZU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1PZU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 6)

Asymmetric Unit (1, 6)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_051783H446RNFAC2_HUMANPolymorphism12479626B/D/H/I/L/MH446R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (1, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_051783H446RNFAC2_HUMANPolymorphism12479626B/DH446R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (1, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_051783H446RNFAC2_HUMANPolymorphism12479626H/IH446R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (1, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_051783H446RNFAC2_HUMANPolymorphism12479626L/MH446R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1PZU)

(-) Exons   (7, 42)

Asymmetric Unit (7, 42)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2ENST000003960092ENSE00001455518chr20:50159258-50158909350NFAC2_HUMAN1-44440--
1.3ENST000003960093ENSE00000662713chr20:50140649-501396201030NFAC2_HUMAN44-3873440--
1.4ENST000003960094ENSE00000662712chr20:50133494-50133323172NFAC2_HUMAN387-444586B:399-444
D:399-444
H:399-444
I:399-444
L:399-444
M:399-444
46
46
46
46
46
46
1.5ENST000003960095ENSE00000662711chr20:50092197-50091995203NFAC2_HUMAN445-512686B:445-512
D:445-512
H:445-512
I:445-512
L:445-512
M:445-512
68
68
68
68
68
68
1.6ENST000003960096ENSE00000662710chr20:50090689-50090517173NFAC2_HUMAN512-570596B:512-570
D:512-570
H:512-570
I:512-570
L:512-570
M:512-570
59
59
59
59
59
59
1.7ENST000003960097ENSE00000662709chr20:50071225-50071085141NFAC2_HUMAN570-617486B:570-617 (gaps)
D:570-617 (gaps)
H:570-617 (gaps)
I:570-617 (gaps)
L:570-617 (gaps)
M:570-617 (gaps)
48
48
48
48
48
48
1.8ENST000003960098ENSE00000662708chr20:50052298-5005224356NFAC2_HUMAN617-635196B:617-635
D:617-635
H:617-635
I:617-635
L:617-635
M:617-635
19
19
19
19
19
19
1.9ENST000003960099ENSE00000662707chr20:50051851-50051725127NFAC2_HUMAN636-678436B:636-678
D:636-678
H:636-678
I:636-678
L:636-678
M:636-678
43
43
43
43
43
43
1.10ENST0000039600910ENSE00001455516chr20:50049293-50048604690NFAC2_HUMAN678-9082316B:678-678
D:678-678
H:678-678
I:678-678
L:678-678
M:678-678
1
1
1
1
1
1
1.12cENST0000039600912cENSE00001955202chr20:50007988-500034944495NFAC2_HUMAN908-925180--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain B from PDB  Type:PROTEIN  Length:276
 aligned with NFAC2_HUMAN | Q13469 from UniProtKB/Swiss-Prot  Length:925

    Alignment length:280
                                   408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678
          NFAC2_HUMAN   399 WPLSSQSGSYELRIEVQPKPHHRAHYETEGSRGAVKAPTGGHPVVQLHGYMENKPLGLQIFIGTADERILKPHAFYQVHRITGKTVTTTSYEKIVGNTKVLEIPLEPKNNMRATIDCAGILKLRNADIELRKGETDIGRKNTRVRLVFRVHIPESSGRIVSLQTASNPIECSQRSAHELPMVERQDTDSCLVYGGQQMILTGQNFTSESKVVFTEKTTDGQQIWEMEATVDKDKSQPNMLFVEIPEYRNKHIRTPVKVNFYVINGKRKRSQPQHFTYHPV 678
               SCOP domains d1pzub2 B:399-571 T-cell transcription factor NFAT1 (NFATC), DNA-binding domain                                                                                              ----d1pzub1 B:576-678 T-cell transcription factor NFAT1 (NFATC2)                                            SCOP domains
               CATH domains 1pzuB01 B:399-569  [code=2.60.40.340, no name defined]                                                                                                                     1p    zuB02 B:570-678 Immunoglobulins                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee...........................eeee........eeeeeeeee...........eeeee............ee.....eeeeeehhhhh.eee...eeeee.hhhhhhh............eeeeeeeeeee.....eeeeeee...ee...----...eeeee...eee.....eeeeeee......eeeeeee.....eeeeeee..........eeeee............eeeeeeee.........eeeeee.. Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------R---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4  PDB: B:399-444 UniProt: 387-444     Exon 1.5  PDB: B:445-512 UniProt: 445-512                           ---------------------------------------------------------Exon 1.7  PDB: B:570-617 (gaps) UniProt: 570-617------------------------------------------------------------1 Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------------------------------------Exon 1.6  PDB: B:512-570 UniProt: 512-570                  ----------------------------------------------Exon 1.8           Exon 1.9  PDB: B:636-678 UniProt: 636-678   Transcript 1 (2)
                 1pzu B 399 WPLSSQSGSYELRIEVQPKPHHRAHYETEGSRGAVKAPTGGHPVVQLHGYMENKPLGLQIFIGTADERILKPHAFYQVHRITGKTVTTTSYEKIVGNTKVLEIPLEPKNNMRATIDCAGILKLRNADIELRKGETDIGRKNTRVRLVFRVHIPESSGRIVSLQTASNPIECSQ----ELPMVERQDTDSCLVYGGQQMILTGQNFTSESKVVFTEKTTDGQQIWEMEATVDKDKSQPNMLFVEIPEYRNKHIRTPVKVNFYVINGKRKRSQPQHFTYHPV 678
                                   408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568  |    578       588       598       608       618       628       638       648       658       668       678
                                                                                                                                                                                                      571  576                                                                                                      

Chain D from PDB  Type:PROTEIN  Length:276
 aligned with NFAC2_HUMAN | Q13469 from UniProtKB/Swiss-Prot  Length:925

    Alignment length:280
                                   408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678
          NFAC2_HUMAN   399 WPLSSQSGSYELRIEVQPKPHHRAHYETEGSRGAVKAPTGGHPVVQLHGYMENKPLGLQIFIGTADERILKPHAFYQVHRITGKTVTTTSYEKIVGNTKVLEIPLEPKNNMRATIDCAGILKLRNADIELRKGETDIGRKNTRVRLVFRVHIPESSGRIVSLQTASNPIECSQRSAHELPMVERQDTDSCLVYGGQQMILTGQNFTSESKVVFTEKTTDGQQIWEMEATVDKDKSQPNMLFVEIPEYRNKHIRTPVKVNFYVINGKRKRSQPQHFTYHPV 678
               SCOP domains d1pzud2 D:399-571 T-cell transcription factor NFAT1 (NFATC), DNA-binding domain                                                                                              ----d1pzud1 D:576-678 T-cell transcription factor NFAT1 (NFATC2)                                            SCOP domains
               CATH domains 1pzuD01 D:399-569  [code=2.60.40.340, no name defined]                                                                                                                     1p    zuD02 D:570-678 Immunoglobulins                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee...........................eeee........eeeeeeeee...........eeeee....................eeeeehhhhh.eee...eeeee.hhhhhhh............eeeeeeeeeee.....eeeeeee...ee...----...eeeee...eee.....eeeeeee......eeeeeee.....eeeeeee..........eeeee............eeeeeeee.........eeeeee.. Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------R---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4  PDB: D:399-444 UniProt: 387-444     Exon 1.5  PDB: D:445-512 UniProt: 445-512                           ---------------------------------------------------------Exon 1.7  PDB: D:570-617 (gaps) UniProt: 570-617------------------------------------------------------------1 Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------------------------------------Exon 1.6  PDB: D:512-570 UniProt: 512-570                  ----------------------------------------------Exon 1.8           Exon 1.9  PDB: D:636-678 UniProt: 636-678   Transcript 1 (2)
                 1pzu D 399 WPLSSQSGSYELRIEVQPKPHHRAHYETEGSRGAVKAPTGGHPVVQLHGYMENKPLGLQIFIGTADERILKPHAFYQVHRITGKTVTTTSYEKIVGNTKVLEIPLEPKNNMRATIDCAGILKLRNADIELRKGETDIGRKNTRVRLVFRVHIPESSGRIVSLQTASNPIECSQ----ELPMVERQDTDSCLVYGGQQMILTGQNFTSESKVVFTEKTTDGQQIWEMEATVDKDKSQPNMLFVEIPEYRNKHIRTPVKVNFYVINGKRKRSQPQHFTYHPV 678
                                   408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568  |    578       588       598       608       618       628       638       648       658       668       678
                                                                                                                                                                                                      571  576                                                                                                      

Chain H from PDB  Type:PROTEIN  Length:276
 aligned with NFAC2_HUMAN | Q13469 from UniProtKB/Swiss-Prot  Length:925

    Alignment length:280
                                   408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678
          NFAC2_HUMAN   399 WPLSSQSGSYELRIEVQPKPHHRAHYETEGSRGAVKAPTGGHPVVQLHGYMENKPLGLQIFIGTADERILKPHAFYQVHRITGKTVTTTSYEKIVGNTKVLEIPLEPKNNMRATIDCAGILKLRNADIELRKGETDIGRKNTRVRLVFRVHIPESSGRIVSLQTASNPIECSQRSAHELPMVERQDTDSCLVYGGQQMILTGQNFTSESKVVFTEKTTDGQQIWEMEATVDKDKSQPNMLFVEIPEYRNKHIRTPVKVNFYVINGKRKRSQPQHFTYHPV 678
               SCOP domains d1pzuh2 H:399-571 T-cell transcription factor NFAT1 (NFATC), DNA-binding domain                                                                                              ----d1pzuh1 H:576-678 T-cell transcription factor NFAT1 (NFATC2)                                            SCOP domains
               CATH domains 1pzuH01 H:399-569  [code=2.60.40.340, no name defined]                                                                                                                     1p    zuH02 H:570-676 Immunoglobulins                                                                      -- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee...........................eeee........eeeeeeeee...........eeeee............ee.....eeeeeehhhhh.eee...eeeee.hhhhhhh............eeeeeeeeeee.....eeeeeee...ee...----...eeeee...eee.....eeeeeee......eeeeeee.....eeeeeee..........eeeee............eeeeeeee.........eeeeee.. Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------R---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4  PDB: H:399-444 UniProt: 387-444     Exon 1.5  PDB: H:445-512 UniProt: 445-512                           ---------------------------------------------------------Exon 1.7  PDB: H:570-617 (gaps) UniProt: 570-617------------------------------------------------------------1 Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------------------------------------Exon 1.6  PDB: H:512-570 UniProt: 512-570                  ----------------------------------------------Exon 1.8           Exon 1.9  PDB: H:636-678 UniProt: 636-678   Transcript 1 (2)
                 1pzu H 399 WPLSSQSGSYELRIEVQPKPHHRAHYETEGSRGAVKAPTGGHPVVQLHGYMENKPLGLQIFIGTADERILKPHAFYQVHRITGKTVTTTSYEKIVGNTKVLEIPLEPKNNMRATIDCAGILKLRNADIELRKGETDIGRKNTRVRLVFRVHIPESSGRIVSLQTASNPIECSQ----ELPMVERQDTDSCLVYGGQQMILTGQNFTSESKVVFTEKTTDGQQIWEMEATVDKDKSQPNMLFVEIPEYRNKHIRTPVKVNFYVINGKRKRSQPQHFTYHPV 678
                                   408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568  |    578       588       598       608       618       628       638       648       658       668       678
                                                                                                                                                                                                      571  576                                                                                                      

Chain I from PDB  Type:PROTEIN  Length:276
 aligned with NFAC2_HUMAN | Q13469 from UniProtKB/Swiss-Prot  Length:925

    Alignment length:280
                                   408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678
          NFAC2_HUMAN   399 WPLSSQSGSYELRIEVQPKPHHRAHYETEGSRGAVKAPTGGHPVVQLHGYMENKPLGLQIFIGTADERILKPHAFYQVHRITGKTVTTTSYEKIVGNTKVLEIPLEPKNNMRATIDCAGILKLRNADIELRKGETDIGRKNTRVRLVFRVHIPESSGRIVSLQTASNPIECSQRSAHELPMVERQDTDSCLVYGGQQMILTGQNFTSESKVVFTEKTTDGQQIWEMEATVDKDKSQPNMLFVEIPEYRNKHIRTPVKVNFYVINGKRKRSQPQHFTYHPV 678
               SCOP domains d1pzui2 I:399-571 T-cell transcription factor NFAT1 (NFATC), DNA-binding domain                                                                                              ----d1pzui1 I:576-678 T-cell transcription factor NFAT1 (NFATC2)                                            SCOP domains
               CATH domains 1pzuI01 I:399-569  [code=2.60.40.340, no name defined]                                                                                                                     1p    zuI02 I:570-678 Immunoglobulins                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee...........................eeee........eeeeeeeee...........eeeee....................eeeeehhhhh.eee...eeeee.hhhhhhh............eeeeeeeeeee.....eeeeeee...ee...----...eeeee...eee.....eeeeeee......eeeeeee.....eeeeeee..........eeeee............eeeeeeee.........eeeeee.. Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------R---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4  PDB: I:399-444 UniProt: 387-444     Exon 1.5  PDB: I:445-512 UniProt: 445-512                           ---------------------------------------------------------Exon 1.7  PDB: I:570-617 (gaps) UniProt: 570-617------------------------------------------------------------1 Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------------------------------------Exon 1.6  PDB: I:512-570 UniProt: 512-570                  ----------------------------------------------Exon 1.8           Exon 1.9  PDB: I:636-678 UniProt: 636-678   Transcript 1 (2)
                 1pzu I 399 WPLSSQSGSYELRIEVQPKPHHRAHYETEGSRGAVKAPTGGHPVVQLHGYMENKPLGLQIFIGTADERILKPHAFYQVHRITGKTVTTTSYEKIVGNTKVLEIPLEPKNNMRATIDCAGILKLRNADIELRKGETDIGRKNTRVRLVFRVHIPESSGRIVSLQTASNPIECSQ----ELPMVERQDTDSCLVYGGQQMILTGQNFTSESKVVFTEKTTDGQQIWEMEATVDKDKSQPNMLFVEIPEYRNKHIRTPVKVNFYVINGKRKRSQPQHFTYHPV 678
                                   408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568  |    578       588       598       608       618       628       638       648       658       668       678
                                                                                                                                                                                                      571  576                                                                                                      

Chain L from PDB  Type:PROTEIN  Length:276
 aligned with NFAC2_HUMAN | Q13469 from UniProtKB/Swiss-Prot  Length:925

    Alignment length:280
                                   408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678
          NFAC2_HUMAN   399 WPLSSQSGSYELRIEVQPKPHHRAHYETEGSRGAVKAPTGGHPVVQLHGYMENKPLGLQIFIGTADERILKPHAFYQVHRITGKTVTTTSYEKIVGNTKVLEIPLEPKNNMRATIDCAGILKLRNADIELRKGETDIGRKNTRVRLVFRVHIPESSGRIVSLQTASNPIECSQRSAHELPMVERQDTDSCLVYGGQQMILTGQNFTSESKVVFTEKTTDGQQIWEMEATVDKDKSQPNMLFVEIPEYRNKHIRTPVKVNFYVINGKRKRSQPQHFTYHPV 678
               SCOP domains d1pzul2 L:399-571 T-cell transcription factor NFAT1 (NFATC), DNA-binding domain                                                                                              ----d1pzul1 L:576-678 T-cell transcription factor NFAT1 (NFATC2)                                            SCOP domains
               CATH domains 1pzuL01 L:399-569  [code=2.60.40.340, no name defined]                                                                                                                     1p    zuL02 L:570-678 Immunoglobulins                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee...........................eeee........eeeeeeeee...........eeeee............ee.....eeeeeehhhhh.eee...eeeee.hhhhhhh............eeeeeeeeeee.....eeeeeeeeeeee...----...eeeee...eee.....eeeeeee......eeeeeee.....eeeeeee..........eeeee............eeeeeeee.........eeeeee.. Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------R---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4  PDB: L:399-444 UniProt: 387-444     Exon 1.5  PDB: L:445-512 UniProt: 445-512                           ---------------------------------------------------------Exon 1.7  PDB: L:570-617 (gaps) UniProt: 570-617------------------------------------------------------------1 Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------------------------------------Exon 1.6  PDB: L:512-570 UniProt: 512-570                  ----------------------------------------------Exon 1.8           Exon 1.9  PDB: L:636-678 UniProt: 636-678   Transcript 1 (2)
                 1pzu L 399 WPLSSQSGSYELRIEVQPKPHHRAHYETEGSRGAVKAPTGGHPVVQLHGYMENKPLGLQIFIGTADERILKPHAFYQVHRITGKTVTTTSYEKIVGNTKVLEIPLEPKNNMRATIDCAGILKLRNADIELRKGETDIGRKNTRVRLVFRVHIPESSGRIVSLQTASNPIECSQ----ELPMVERQDTDSCLVYGGQQMILTGQNFTSESKVVFTEKTTDGQQIWEMEATVDKDKSQPNMLFVEIPEYRNKHIRTPVKVNFYVINGKRKRSQPQHFTYHPV 678
                                   408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568  |    578       588       598       608       618       628       638       648       658       668       678
                                                                                                                                                                                                      571  576                                                                                                      

Chain M from PDB  Type:PROTEIN  Length:276
 aligned with NFAC2_HUMAN | Q13469 from UniProtKB/Swiss-Prot  Length:925

    Alignment length:280
                                   408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678
          NFAC2_HUMAN   399 WPLSSQSGSYELRIEVQPKPHHRAHYETEGSRGAVKAPTGGHPVVQLHGYMENKPLGLQIFIGTADERILKPHAFYQVHRITGKTVTTTSYEKIVGNTKVLEIPLEPKNNMRATIDCAGILKLRNADIELRKGETDIGRKNTRVRLVFRVHIPESSGRIVSLQTASNPIECSQRSAHELPMVERQDTDSCLVYGGQQMILTGQNFTSESKVVFTEKTTDGQQIWEMEATVDKDKSQPNMLFVEIPEYRNKHIRTPVKVNFYVINGKRKRSQPQHFTYHPV 678
               SCOP domains d1pzum2 M:399-571 T-cell transcription factor NFAT1 (NFATC), DNA-binding domain                                                                                              ----d1pzum1 M:576-678 T-cell transcription factor NFAT1 (NFATC2)                                            SCOP domains
               CATH domains 1pzuM01 M:399-569  [code=2.60.40.340, no name defined]                                                                                                                     1p    zuM02 M:570-678 Immunoglobulins                                                                         CATH domains
           Pfam domains (1) -----------RHD-1pzuM07 M:410-570                                                                                                                                            -----------TIG-1pzuM01 M:582-675                                                                         --- Pfam domains (1)
           Pfam domains (2) -----------RHD-1pzuM08 M:410-570                                                                                                                                            -----------TIG-1pzuM02 M:582-675                                                                         --- Pfam domains (2)
           Pfam domains (3) -----------RHD-1pzuM09 M:410-570                                                                                                                                            -----------TIG-1pzuM03 M:582-675                                                                         --- Pfam domains (3)
           Pfam domains (4) -----------RHD-1pzuM10 M:410-570                                                                                                                                            -----------TIG-1pzuM04 M:582-675                                                                         --- Pfam domains (4)
           Pfam domains (5) -----------RHD-1pzuM11 M:410-570                                                                                                                                            -----------TIG-1pzuM05 M:582-675                                                                         --- Pfam domains (5)
           Pfam domains (6) -----------RHD-1pzuM12 M:410-570                                                                                                                                            -----------TIG-1pzuM06 M:582-675                                                                         --- Pfam domains (6)
         Sec.struct. author ...........eeeee...........................eeee........eeeeeeee............eeeee....................eeeeehhhhh.eee...eeeee.hhhhhhh............eeeeeeeeeee.....eeeeeeeeeeee...----...eeeee...eee.....eeeeeee......eeeeeee.....eeeeeee..........eeeee............eeeeeeee.........eeeeee.. Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------R---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4  PDB: M:399-444 UniProt: 387-444     Exon 1.5  PDB: M:445-512 UniProt: 445-512                           ---------------------------------------------------------Exon 1.7  PDB: M:570-617 (gaps) UniProt: 570-617------------------------------------------------------------1 Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------------------------------------Exon 1.6  PDB: M:512-570 UniProt: 512-570                  ----------------------------------------------Exon 1.8           Exon 1.9  PDB: M:636-678 UniProt: 636-678   Transcript 1 (2)
                 1pzu M 399 WPLSSQSGSYELRIEVQPKPHHRAHYETEGSRGAVKAPTGGHPVVQLHGYMENKPLGLQIFIGTADERILKPHAFYQVHRITGKTVTTTSYEKIVGNTKVLEIPLEPKNNMRATIDCAGILKLRNADIELRKGETDIGRKNTRVRLVFRVHIPESSGRIVSLQTASNPIECSQ----ELPMVERQDTDSCLVYGGQQMILTGQNFTSESKVVFTEKTTDGQQIWEMEATVDKDKSQPNMLFVEIPEYRNKHIRTPVKVNFYVINGKRKRSQPQHFTYHPV 678
                                   408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568  |    578       588       598       608       618       628       638       648       658       668       678
                                                                                                                                                                                                      571  576                                                                                                      

Chain T from PDB  Type:DNA  Length:14
                                              
                 1pzu T   1 TTGAGGAATTTCCA  14
                                    10    

Chain V from PDB  Type:DNA  Length:14
                                              
                 1pzu V   1 TTGAGGAATTTCCA  14
                                    10    

Chain W from PDB  Type:DNA  Length:14
                                              
                 1pzu W   1 AATGGAAATTCCTC  14
                                    10    

Chain X from PDB  Type:DNA  Length:14
                                              
                 1pzu X   1 TTGAGGAATTTCCA  14
                                    10    

Chain Y from PDB  Type:DNA  Length:14
                                              
                 1pzu Y   1 AATGGAAATTCCTC  14
                                    10    

Chain Z from PDB  Type:DNA  Length:14
                                              
                 1pzu Z   1 AATGGAAATTCCTC  14
                                    10    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 12)

Asymmetric Unit

(-) CATH Domains  (2, 12)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)
1a1pzuB01B:399-569
1b1pzuD01D:399-569
1c1pzuH01H:399-569
1d1pzuI01I:399-569
1e1pzuL01L:399-569
1f1pzuM01M:399-569
2a1pzuB02B:570-678
2b1pzuD02D:570-678
2c1pzuI02I:570-678
2d1pzuL02L:570-678
2e1pzuM02M:570-678
2f1pzuH02H:570-676

(-) Pfam Domains  (2, 12)

Asymmetric Unit
(-)
Clan: E-set (290)
(-)
Family: TIG (28)
1aTIG-1pzuM01M:582-675
1bTIG-1pzuM02M:582-675
1cTIG-1pzuM03M:582-675
1dTIG-1pzuM04M:582-675
1eTIG-1pzuM05M:582-675
1fTIG-1pzuM06M:582-675
(-)
Clan: P53-like (54)
(-)
Family: RHD (21)
2aRHD-1pzuM07M:410-570
2bRHD-1pzuM08M:410-570
2cRHD-1pzuM09M:410-570
2dRHD-1pzuM10M:410-570
2eRHD-1pzuM11M:410-570
2fRHD-1pzuM12M:410-570

(-) Gene Ontology  (36, 36)

Asymmetric Unit(hide GO term definitions)
Chain B,D,H,I,L,M   (NFAC2_HUMAN | Q13469)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0000978    RNA polymerase II core promoter proximal region sequence-specific DNA binding    Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II.
    GO:0003682    chromatin binding    Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0043565    sequence-specific DNA binding    Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
    GO:0008134    transcription factor binding    Interacting selectively and non-covalently with a transcription factor, any protein required to initiate or regulate transcription.
    GO:0044212    transcription regulatory region DNA binding    Interacting selectively and non-covalently with a DNA region that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors.
    GO:0001077    transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding    Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II (RNAP II) in order to activate or increase the frequency, rate or extent of transcription from the RNAP II promoter.
    GO:0001078    transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding    Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II (RNAP II) in order to stop, prevent, or reduce the frequency, rate or extent of transcription from an RNA polymerase II promoter.
biological process
    GO:0050853    B cell receptor signaling pathway    A series of molecular signals initiated by the cross-linking of an antigen receptor on a B cell.
    GO:0038095    Fc-epsilon receptor signaling pathway    A series of molecular signals initiated by the binding of the Fc portion of immunoglobulin E (IgE) to an Fc-epsilon receptor on the surface of a signal-receiving cell, and ending with regulation of a downstream cellular process, e.g. transcription. The Fc portion of an immunoglobulin is its C-terminal constant region.
    GO:0033173    calcineurin-NFAT signaling cascade    Any intracellular signal transduction in which the signal is passed on within the cell by activation of a member of the NFAT protein family as a consequence of NFAT dephosphorylation by Ca(2+)-activated calcineurin. The cascade begins with calcium-dependent activation of the phosphatase calcineurin. Calcineurin dephosphorylates multiple phosphoserine residues on NFAT, resulting in the translocation of NFAT to the nucleus. The cascade ends with regulation of transcription by NFAT. The calcineurin-NFAT cascade lies downstream of many cell surface receptors, including G-protein coupled receptors (GPCRs) and receptor tyrosine kinases (RTKs) that signal to mobilize calcium ions (Ca2+).
    GO:0016477    cell migration    The controlled self-propelled movement of a cell from one site to a destination guided by molecular cues. Cell migration is a central process in the development and maintenance of multicellular organisms.
    GO:0006974    cellular response to DNA damage stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
    GO:0001816    cytokine production    The appearance of a cytokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.
    GO:0014904    myotube cell development    The process aimed at the progression of a myotube cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. Myotubes are multinucleated cells that are formed when proliferating myoblasts exit the cell cycle, differentiate and fuse.
    GO:0000122    negative regulation of transcription from RNA polymerase II promoter    Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0030890    positive regulation of B cell proliferation    Any process that activates or increases the rate or extent of B cell proliferation.
    GO:0010628    positive regulation of gene expression    Any process that increases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
    GO:1901741    positive regulation of myoblast fusion    Any process that activates or increases the frequency, rate or extent of myoblast fusion.
    GO:0045944    positive regulation of transcription from RNA polymerase II promoter    Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0045893    positive regulation of transcription, DNA-templated    Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0042493    response to drug    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
    GO:0006366    transcription from RNA polymerase II promoter    The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0015629    actin cytoskeleton    The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0044798    nuclear transcription factor complex    A protein complex, located in the nucleus, that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0005667    transcription factor complex    A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NFAC2_HUMAN | Q134691a02 1owr 1p7h 1s9k 2as5 2o93 3qrf

(-) Related Entries Specified in the PDB File

1a02 STRUCTURE OF THE DNA BINDING DOMAINS OF NFAT, FOS AND JUN BOUND TO DNA