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(-) Description

Title :  STRUCTURE OF THE DNA BINDING DOMAINS OF NFAT AND FOXP2 BOUND SPECIFICALLY TO DNA.
 
Authors :  Y. Wu, J. C. Stroud, M. Borde, D. L. Bates, L. Guo, A. Han, A. Rao, L. Chen
Date :  22 Aug 05  (Deposition) - 08 Aug 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D,F,G,M,N
Biol. Unit 1:  A,B,F,N  (1x)
Biol. Unit 2:  C,D,G,M  (1x)
Keywords :  Forkhead Domain, Rhr Domain, Rel Homology Region, Ig Fold, Winged Helix-Turn-Helix, B-Dna, Transcription/Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Y. Wu, M. Borde, V. Heissmeyer, M. Feuerer, A. D. Lapan, J. C. Stroud, D. L. Bates, L. Guo, A. Han, S. F. Ziegler, D. Mathis, C. Benoist, L. Chen, A. Rao
Foxp3 Controls Regulatory T Cell Function Through Cooperation With Nfat.
Cell(Cambridge, Mass. ) V. 126 375 2006
PubMed-ID: 16873067  |  Reference-DOI: 10.1016/J.CELL.2006.05.042
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'- D(TP*TP*AP*GP*GP*AP*AP*AP*AP*TP*TP*TP*GP*TP*TP*TP*CP*AP*TP* AP*GP*)-3'
    ChainsA, C
    EngineeredYES
    Other DetailsSOLID PHASE SYNTHESIS
    SyntheticYES
 
Molecule 2 - 5'- D(AP*AP*CP*TP*AP*TP*GP*AP*AP*AP*CP*AP*AP*AP*TP*TP*TP*TP*CP* CP*TP*)-3'
    ChainsB, D
    EngineeredYES
    SyntheticYES
 
Molecule 3 - NUCLEAR FACTOR OF ACTIVATED T-CELLS, CYTOPLASMIC 2
    ChainsN, M
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPLM1
    Expression System StrainBL21 DE3
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentNFAT1 DNA BINDING DOMAIN
    GeneNFATC2, NFAT1, NFATP
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymT CELL TRANSCRIPTION FACTOR NFAT1, NFAT PRE- EXISTING SUBUNIT, NF-ATP
 
Molecule 4 - FORKHEAD BOX PROTEIN P2
    ChainsF, G
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET-30 LIC
    Expression System StrainROSETTA
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentFOXP2 DNA BINDING DOMAIN
    GeneFOXP2
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymCAG REPEAT PROTEIN 44, TRINUCLEOTIDE REPEAT- CONTAINING GENE 10 PROTEIN

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDFGMN
Biological Unit 1 (1x)AB  F  N
Biological Unit 2 (1x)  CD GM 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1MG2Ligand/IonMAGNESIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU F:556 , SER F:557 , HIS F:559 , PHE F:562BINDING SITE FOR RESIDUE MG F 201
2AC2SOFTWARELEU G:556 , SER G:557 , HIS G:559 , PHE G:562BINDING SITE FOR RESIDUE MG G 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2AS5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2AS5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (2, 4)

Asymmetric Unit (2, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_051783H446RNFAC2_HUMANPolymorphism12479626M/NH446R
2UniProtVAR_012278R553HFOXP2_HUMANDisease (SPCH1)121908377F/GR553H

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_051783H446RNFAC2_HUMANPolymorphism12479626NH446R
2UniProtVAR_012278R553HFOXP2_HUMANDisease (SPCH1)121908377FR553H

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_051783H446RNFAC2_HUMANPolymorphism12479626MH446R
2UniProtVAR_012278R553HFOXP2_HUMANDisease (SPCH1)121908377GR553H

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (3, 6)

Asymmetric Unit (3, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1REL_2PS50254 NF-kappa-B/Rel/dorsal domain profile.NFAC2_HUMAN392-574
 
  2M:392-574
N:392-574
2FORK_HEAD_3PS50039 Fork head domain profile.FOXP2_HUMAN504-577
 
  2F:504-577
G:504-577
3FORK_HEAD_2PS00658 Fork head domain signature 2.FOXP2_HUMAN548-554
 
  2F:548-554
G:548-554
Biological Unit 1 (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1REL_2PS50254 NF-kappa-B/Rel/dorsal domain profile.NFAC2_HUMAN392-574
 
  1-
N:392-574
2FORK_HEAD_3PS50039 Fork head domain profile.FOXP2_HUMAN504-577
 
  1F:504-577
-
3FORK_HEAD_2PS00658 Fork head domain signature 2.FOXP2_HUMAN548-554
 
  1F:548-554
-
Biological Unit 2 (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1REL_2PS50254 NF-kappa-B/Rel/dorsal domain profile.NFAC2_HUMAN392-574
 
  1M:392-574
-
2FORK_HEAD_3PS50039 Fork head domain profile.FOXP2_HUMAN504-577
 
  1-
G:504-577
3FORK_HEAD_2PS00658 Fork head domain signature 2.FOXP2_HUMAN548-554
 
  1-
G:548-554

(-) Exons   (10, 20)

Asymmetric Unit (10, 20)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.7ENST000003934947ENSE00001558209chr7:114054329-114054597269FOXP2_HUMAN-00--
1.9cENST000003934949cENSE00002190822chr7:114066557-114066734178FOXP2_HUMAN1-56560--
1.12ENST0000039349412ENSE00001772837chr7:114174672-11417476190FOXP2_HUMAN57-86300--
1.15aENST0000039349415aENSE00001601293chr7:114268595-114268732138FOXP2_HUMAN87-132460--
1.17bENST0000039349417bENSE00001723496chr7:114269860-114270060201FOXP2_HUMAN133-199670--
1.18dENST0000039349418dENSE00001596482chr7:114271583-114271760178FOXP2_HUMAN200-259600--
1.19bENST0000039349419bENSE00001636514chr7:114282465-114282678214FOXP2_HUMAN259-330720--
1.20aENST0000039349420aENSE00001695866chr7:114284740-114284844105FOXP2_HUMAN330-365360--
1.21ENST0000039349421ENSE00001798613chr7:114292258-11429234588FOXP2_HUMAN365-394300--
1.22aENST0000039349422aENSE00001643159chr7:114293981-11429406484FOXP2_HUMAN395-422280--
1.24ENST0000039349424ENSE00001726579chr7:114298121-114298322202FOXP2_HUMAN423-490680--
1.25ENST0000039349425ENSE00001610854chr7:114299411-11429948777FOXP2_HUMAN490-515262F:502-515
G:502-515
14
14
1.26ENST0000039349426ENSE00001721811chr7:114299627-114299728102FOXP2_HUMAN516-549342F:516-549
G:516-549
34
34
1.27ENST0000039349427ENSE00001699074chr7:114302120-114302241122FOXP2_HUMAN550-590412F:550-584
G:550-584
35
35
1.28ENST0000039349428ENSE00001726203chr7:114303505-11430357470FOXP2_HUMAN590-613240--
1.29aENST0000039349429aENSE00001774863chr7:114304328-114304491164FOXP2_HUMAN614-668550--
1.30dENST0000039349430dENSE00001515519chr7:114329837-114330218382FOXP2_HUMAN668-715480--

2.2ENST000003960092ENSE00001455518chr20:50159258-50158909350NFAC2_HUMAN1-44440--
2.3ENST000003960093ENSE00000662713chr20:50140649-501396201030NFAC2_HUMAN44-3873440--
2.4ENST000003960094ENSE00000662712chr20:50133494-50133323172NFAC2_HUMAN387-444582M:392-444
N:392-444
53
53
2.5ENST000003960095ENSE00000662711chr20:50092197-50091995203NFAC2_HUMAN445-512682M:445-512
N:445-512
68
68
2.6ENST000003960096ENSE00000662710chr20:50090689-50090517173NFAC2_HUMAN512-570592M:512-570
N:512-570
59
59
2.7ENST000003960097ENSE00000662709chr20:50071225-50071085141NFAC2_HUMAN570-617482M:570-617
N:570-617
48
48
2.8ENST000003960098ENSE00000662708chr20:50052298-5005224356NFAC2_HUMAN617-635192M:617-635
N:617-635
19
19
2.9ENST000003960099ENSE00000662707chr20:50051851-50051725127NFAC2_HUMAN636-678432M:636-678
N:636-678
43
43
2.10ENST0000039600910ENSE00001455516chr20:50049293-50048604690NFAC2_HUMAN678-9082312M:678-678
N:678-678
1
1
2.12cENST0000039600912cENSE00001955202chr20:50007988-500034944495NFAC2_HUMAN908-925180--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:DNA  Length:21
                                                      
                2as5 A 4001 TTAGGAAAATTTGTTTCATAG 4021
                                  4010      4020 

Chain B from PDB  Type:DNA  Length:21
                                                      
                2as5 B 5001 AACTATGAAACAAATTTTCCT 5021
                                  5010      5020 

Chain C from PDB  Type:DNA  Length:21
                                                      
                2as5 C 4001 TTAGGAAAATTTGTTTCATAG 4021
                                  4010      4020 

Chain D from PDB  Type:DNA  Length:21
                                                      
                2as5 D 5001 AACTATGAAACAAATTTTCCT 5021
                                  5010      5020 

Chain F from PDB  Type:PROTEIN  Length:83
 aligned with FOXP2_HUMAN | O15409 from UniProtKB/Swiss-Prot  Length:715

    Alignment length:83
                                   511       521       531       541       551       561       571       581   
         FOXP2_HUMAN    502 DVRPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTVDEVEYQKRR  584
               SCOP domains d2as5f_ F: automated matches                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhh.......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..eeeeee..eeeeeehhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------H------------------------------- SAPs(SNPs)
                PROSITE (2) --FORK_HEAD_3  PDB: F:504-577 UniProt: 504-577                              ------- PROSITE (2)
                PROSITE (3) ----------------------------------------------FORK_HE------------------------------ PROSITE (3)
               Transcript 1 Exon 1.25     Exon 1.26  PDB: F:516-549         Exon 1.27  PDB: F:550-584           Transcript 1
                2as5 F  502 IVRPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTVDEVEYQKRR  584
                                   511       521       531       541       551       561       571       581   

Chain G from PDB  Type:PROTEIN  Length:83
 aligned with FOXP2_HUMAN | O15409 from UniProtKB/Swiss-Prot  Length:715

    Alignment length:83
                                   511       521       531       541       551       561       571       581   
         FOXP2_HUMAN    502 DVRPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTVDEVEYQKRR  584
               SCOP domains d2as5g_ G: automated matches                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhh.......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..eeeeee..eeeeeehhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------H------------------------------- SAPs(SNPs)
                PROSITE (2) --FORK_HEAD_3  PDB: G:504-577 UniProt: 504-577                              ------- PROSITE (2)
                PROSITE (3) ----------------------------------------------FORK_HE------------------------------ PROSITE (3)
               Transcript 1 Exon 1.25     Exon 1.26  PDB: G:516-549         Exon 1.27  PDB: G:550-584           Transcript 1
                2as5 G  502 IVRPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTVDEVEYQKRR  584
                                   511       521       531       541       551       561       571       581   

Chain M from PDB  Type:PROTEIN  Length:287
 aligned with NFAC2_HUMAN | Q13469 from UniProtKB/Swiss-Prot  Length:925

    Alignment length:287
                                   401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       
         NFAC2_HUMAN    392 ASLPPLEWPLSSQSGSYELRIEVQPKPHHRAHYETEGSRGAVKAPTGGHPVVQLHGYMENKPLGLQIFIGTADERILKPHAFYQVHRITGKTVTTTSYEKIVGNTKVLEIPLEPKNNMRATIDCAGILKLRNADIELRKGETDIGRKNTRVRLVFRVHIPESSGRIVSLQTASNPIECSQRSAHELPMVERQDTDSCLVYGGQQMILTGQNFTSESKVVFTEKTTDGQQIWEMEATVDKDKSQPNMLFVEIPEYRNKHIRTPVKVNFYVINGKRKRSQPQHFTYHPV  678
               SCOP domains ----d2as5m2 M:396-575 T-cell transcription factor NFAT1 (NFATC), DNA-binding domain                                                                                                     d2as5m1 M:576-678 T-cell transcription factor NFAT1 (NFATC2)                                            SCOP domains
               CATH domains -----2as5M01 M:397-569  [code=2.60.40.340, no name defined]                                                                                                                       2as5M02 M:570-678 Immunoglobulins                                                                             CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............ee..ee.............ee..................ee.........eeeeeeeee...........eeeee..........eeeee..eeeeeeeehhhhh.ee....eeeee.hhhhhhh............eeeeeeeeeeee...eeeeeeeeeeeee..hhhhh...eeeee...eee.....eeeeeee......eeeeeee.....eeeee..ee........eeeee............eeeeeeee.........eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------R---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE REL_2  PDB: M:392-574 UniProt: 392-574                                                                                                                                                 -------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 2 (1) Exon 2.4  PDB: M:392-444 UniProt: 387-444            Exon 2.5  PDB: M:445-512 UniProt: 445-512                           ---------------------------------------------------------Exon 2.7  PDB: M:570-617 UniProt: 570-617       ------------------------------------------------------------2 Transcript 2 (1)
           Transcript 2 (2) ------------------------------------------------------------------------------------------------------------------------Exon 2.6  PDB: M:512-570 UniProt: 512-570                  ----------------------------------------------Exon 2.8           Exon 2.9  PDB: M:636-678 UniProt: 636-678   Transcript 2 (2)
                2as5 M  392 ASLPPLEWPLSSQSGSYELRIEVQPKPHHRAHYETEGSRGAVKAPTGGHPVVQLHGYMENKPLGLQIFIGTADERILKPHAFYQVHRITGKTVTTTSYEKIVGNTKVLEIPLEPKNNMRATIDCAGILKLRNADIELRKGETDIGRKNTRVRLVFRVHIPESSGRIVSLQTASNPIECSQRSAHELPMVERQDTDSCLVYGGQQMILTGQNFTSESKVVFTEKTTDGQQIWEMEATVDKDKSQPNMLFVEIPEYRNKHIRTPVKVNFYVINGKRKRSQPQHFTYHPV  678
                                   401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       

Chain N from PDB  Type:PROTEIN  Length:287
 aligned with NFAC2_HUMAN | Q13469 from UniProtKB/Swiss-Prot  Length:925

    Alignment length:287
                                   401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       
         NFAC2_HUMAN    392 ASLPPLEWPLSSQSGSYELRIEVQPKPHHRAHYETEGSRGAVKAPTGGHPVVQLHGYMENKPLGLQIFIGTADERILKPHAFYQVHRITGKTVTTTSYEKIVGNTKVLEIPLEPKNNMRATIDCAGILKLRNADIELRKGETDIGRKNTRVRLVFRVHIPESSGRIVSLQTASNPIECSQRSAHELPMVERQDTDSCLVYGGQQMILTGQNFTSESKVVFTEKTTDGQQIWEMEATVDKDKSQPNMLFVEIPEYRNKHIRTPVKVNFYVINGKRKRSQPQHFTYHPV  678
               SCOP domains ----d2as5n2 N:396-575 T-cell transcription factor NFAT1 (NFATC), DNA-binding domain                                                                                                     d2as5n1 N:576-678 T-cell transcription factor NFAT1 (NFATC2)                                            SCOP domains
               CATH domains -----2as5N01 N:397-569  [code=2.60.40.340, no name defined]                                                                                                                       2as5N02 N:570-678 Immunoglobulins                                                                             CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............ee..ee.............ee..................ee.........eeeeeeeee...........eeeee..........ee........eeeeehhhhh.ee....eeeee.hhhhhhh............eeeeeeeeeeee...eeeeeeeeeeeee..hhhhhh..eeeee...eee.....eeeeeee......eeeeeee.....eeeee..ee........eeeee..............eeeeee.........eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------R---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE REL_2  PDB: N:392-574 UniProt: 392-574                                                                                                                                                 -------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 2 (1) Exon 2.4  PDB: N:392-444 UniProt: 387-444            Exon 2.5  PDB: N:445-512 UniProt: 445-512                           ---------------------------------------------------------Exon 2.7  PDB: N:570-617 UniProt: 570-617       ------------------------------------------------------------2 Transcript 2 (1)
           Transcript 2 (2) ------------------------------------------------------------------------------------------------------------------------Exon 2.6  PDB: N:512-570 UniProt: 512-570                  ----------------------------------------------Exon 2.8           Exon 2.9  PDB: N:636-678 UniProt: 636-678   Transcript 2 (2)
                2as5 N  392 ASLPPLEWPLSSQSGSYELRIEVQPKPHHRAHYETEGSRGAVKAPTGGHPVVQLHGYMENKPLGLQIFIGTADERILKPHAFYQVHRITGKTVTTTSYEKIVGNTKVLEIPLEPKNNMRATIDCAGILKLRNADIELRKGETDIGRKNTRVRLVFRVHIPESSGRIVSLQTASNPIECSQRSAHELPMVERQDTDSCLVYGGQQMILTGQNFTSESKVVFTEKTTDGQQIWEMEATVDKDKSQPNMLFVEIPEYRNKHIRTPVKVNFYVINGKRKRSQPQHFTYHPV  678
                                   401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 6)

Asymmetric Unit

(-) CATH Domains  (2, 4)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2AS5)

(-) Gene Ontology  (57, 67)

Asymmetric Unit(hide GO term definitions)
Chain F,G   (FOXP2_HUMAN | O15409)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0000978    RNA polymerase II core promoter proximal region sequence-specific DNA binding    Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II.
    GO:0000981    RNA polymerase II transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription by RNA polymerase II. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046982    protein heterodimerization activity    Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
    GO:0043565    sequence-specific DNA binding    Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
    GO:0001078    transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding    Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II (RNAP II) in order to stop, prevent, or reduce the frequency, rate or extent of transcription from an RNA polymerase II promoter.
biological process
    GO:0043010    camera-type eye development    The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field.
    GO:0021757    caudate nucleus development    The progression of the caudate nucleus over time from its initial formation until its mature state. The caudate nucleus is the C-shaped structures of the striatum containing input neurons involved with control of voluntary movement in the brain.
    GO:0021549    cerebellum development    The process whose specific outcome is the progression of the cerebellum over time, from its formation to the mature structure. The cerebellum is the portion of the brain in the back of the head between the cerebrum and the pons. In mice, the cerebellum controls balance for walking and standing, modulates the force and range of movement and is involved in the learning of motor skills.
    GO:0021987    cerebral cortex development    The progression of the cerebral cortex over time from its initial formation until its mature state. The cerebral cortex is the outer layered region of the telencephalon.
    GO:0040007    growth    The increase in size or mass of an entire organism, a part of an organism or a cell.
    GO:0048286    lung alveolus development    The process whose specific outcome is the progression of the alveolus over time, from its formation to the mature structure. The alveolus is a sac for holding air in the lungs; formed by the terminal dilation of air passageways.
    GO:0030324    lung development    The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the esophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax.
    GO:0000122    negative regulation of transcription from RNA polymerase II promoter    Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0045892    negative regulation of transcription, DNA-templated    Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0050679    positive regulation of epithelial cell proliferation    Any process that activates or increases the rate or extent of epithelial cell proliferation.
    GO:0060501    positive regulation of epithelial cell proliferation involved in lung morphogenesis    Any process that increases the rate or frequency of epithelial cell proliferation that results in the lung attaining its shape.
    GO:0002053    positive regulation of mesenchymal cell proliferation    The process of activating or increasing the rate or extent of mesenchymal cell proliferation. Mesenchymal cells are loosely organized embryonic cells.
    GO:0009791    post-embryonic development    The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development.
    GO:0021758    putamen development    The progression of the putamen over time from its initial formation until its mature state. The putamen is the lens-shaped basal ganglion involved with control of voluntary movement in the brain.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0060013    righting reflex    A reflex process in which an animal immediately tries to turn over after being placed in a supine position.
    GO:0007519    skeletal muscle tissue development    The developmental sequence of events leading to the formation of adult skeletal muscle tissue. The main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers.
    GO:0048745    smooth muscle tissue development    The process whose specific outcome is the progression of smooth muscle over time, from its formation to the mature structure.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
    GO:0042297    vocal learning    A behavioral process whose outcome is a relatively long-lasting behavioral change whereby an organism modifies innate vocalizations to imitate sounds produced by others.
cellular component
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain M,N   (NFAC2_HUMAN | Q13469)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0000978    RNA polymerase II core promoter proximal region sequence-specific DNA binding    Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II.
    GO:0003682    chromatin binding    Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0043565    sequence-specific DNA binding    Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
    GO:0008134    transcription factor binding    Interacting selectively and non-covalently with a transcription factor, any protein required to initiate or regulate transcription.
    GO:0044212    transcription regulatory region DNA binding    Interacting selectively and non-covalently with a DNA region that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors.
    GO:0001077    transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding    Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II (RNAP II) in order to activate or increase the frequency, rate or extent of transcription from the RNAP II promoter.
    GO:0001078    transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding    Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II (RNAP II) in order to stop, prevent, or reduce the frequency, rate or extent of transcription from an RNA polymerase II promoter.
biological process
    GO:0050853    B cell receptor signaling pathway    A series of molecular signals initiated by the cross-linking of an antigen receptor on a B cell.
    GO:0038095    Fc-epsilon receptor signaling pathway    A series of molecular signals initiated by the binding of the Fc portion of immunoglobulin E (IgE) to an Fc-epsilon receptor on the surface of a signal-receiving cell, and ending with regulation of a downstream cellular process, e.g. transcription. The Fc portion of an immunoglobulin is its C-terminal constant region.
    GO:0033173    calcineurin-NFAT signaling cascade    Any intracellular signal transduction in which the signal is passed on within the cell by activation of a member of the NFAT protein family as a consequence of NFAT dephosphorylation by Ca(2+)-activated calcineurin. The cascade begins with calcium-dependent activation of the phosphatase calcineurin. Calcineurin dephosphorylates multiple phosphoserine residues on NFAT, resulting in the translocation of NFAT to the nucleus. The cascade ends with regulation of transcription by NFAT. The calcineurin-NFAT cascade lies downstream of many cell surface receptors, including G-protein coupled receptors (GPCRs) and receptor tyrosine kinases (RTKs) that signal to mobilize calcium ions (Ca2+).
    GO:0016477    cell migration    The controlled self-propelled movement of a cell from one site to a destination guided by molecular cues. Cell migration is a central process in the development and maintenance of multicellular organisms.
    GO:0006974    cellular response to DNA damage stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
    GO:0001816    cytokine production    The appearance of a cytokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.
    GO:0014904    myotube cell development    The process aimed at the progression of a myotube cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. Myotubes are multinucleated cells that are formed when proliferating myoblasts exit the cell cycle, differentiate and fuse.
    GO:0000122    negative regulation of transcription from RNA polymerase II promoter    Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0030890    positive regulation of B cell proliferation    Any process that activates or increases the rate or extent of B cell proliferation.
    GO:0010628    positive regulation of gene expression    Any process that increases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
    GO:1901741    positive regulation of myoblast fusion    Any process that activates or increases the frequency, rate or extent of myoblast fusion.
    GO:0045944    positive regulation of transcription from RNA polymerase II promoter    Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0045893    positive regulation of transcription, DNA-templated    Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0042493    response to drug    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
    GO:0006366    transcription from RNA polymerase II promoter    The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0015629    actin cytoskeleton    The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0044798    nuclear transcription factor complex    A protein complex, located in the nucleus, that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0005667    transcription factor complex    A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FOXP2_HUMAN | O154092a07
        NFAC2_HUMAN | Q134691a02 1owr 1p7h 1pzu 1s9k 2o93 3qrf

(-) Related Entries Specified in the PDB File

1a02 CRYSTAL STRUCTURE OF TERNARY COMPLEX OF NFAT/AP-1/DNA
1owr CRYSTAL STRUCTURE OF HUMAN NFAT1 BOUND MONOMERICALLY TO DNA
2a07 CRYSTAL STRUCTURE OF FOXP2 BOUND SPECIFICALLY TO DNA