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(-) Description

Title :  THE STRUCTURE OF JNK3 IN COMPLEX WITH AN IMIDAZOLE-PYRIMIDINE INHIBITOR
 
Authors :  G. Scapin, S. B. Patel, J. Lisnock, J. W. Becker, P. V. Lograsso, O. S. Sma G. Bricogne
Date :  10 Apr 15  (Deposition) - 06 May 15  (Release) - 06 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Map Kinase, Apoptosis, Inhibition, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Scapin, S. B. Patel, J. Lisnock, J. W. Becker, P. V. Lograsso
The Structure Of Jnk3 In Complex With Small Molecule Inhibitors: Structural Basis For Potency And Selectivity.
Chem. Biol. V. 10 705 2003
PubMed-ID: 12954329
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MITOGEN-ACTIVATED PROTEIN KINASE 10
    Chains: A
    EC Number: 2.7.11.24
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 40-401
    Gene: MAPK10, JNK3, JNK3A, PRKM10, SAPK1B
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MAPK 10,MAP KINASE P49 3F12,STRESS-ACTIVATED PROTEIN KINASE 1B,SAPK1B,STRESS-ACTIVATED PROTEIN KINASE JNK3,C-JUN N-TERMINAL KINASE 3

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
18801Ligand/IonCYCLOHEXYL-{4-[5-(3,4-DICHLOROPHENYL)-2-PIPERIDIN-4-YL-3-PROPYL-3H-IMIDAZOL-4-YL]-PYRIMIDIN-2-YL}AMINE
2ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
3UNX3Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:73 , ALA A:74 , GLN A:75 , ARG A:107 , SER A:193 , ASN A:194 , THR A:226 , TYR A:229 , GLU A:255 , ILE A:261 , 880 A:502 , HOH A:612binding site for residue ANP A 501
2AC2SOFTWAREILE A:70 , VAL A:78 , ALA A:91 , LYS A:93 , ILE A:124 , LEU A:144 , MET A:146 , GLU A:147 , MET A:149 , ASP A:150 , GLN A:155 , SER A:193 , ASN A:194 , ANP A:501 , HOH A:630binding site for residue 880 A 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Z9L)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4Z9L)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Z9L)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Z9L)

(-) Exons   (0, 0)

(no "Exon" information available for 4Z9L)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:333
                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeee..eeeeeeeee....eeeeeee....eeeeeeeee.hhhhhhhhhhhhhhhhhh............eee..........eeeeeee...eehhhhhh...hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee...............hhhhhh......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhh..hhhhhhhhhh.......hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh..hhhhhh.....hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4z9l A  45 DNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLSFMMVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFDSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDPAEVEAPPPHTIEEWKELIYKEVMN 400
                                    54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204     ||220|      234       244       254       264       274       284       294       304       314   ||  326       336       346       356       366      |387       397   
                                                                                                                                                                                               210|  ||                                                                                          318|                                                 373|               
                                                                                                                                                                                                217  ||                                                                                           321                                                  385               
                                                                                                                                                                                                   220|                                                                                                                                                                  
                                                                                                                                                                                                    225
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0 ; only for superseded entry 1PMQ: 1,1)

(no "SCOP Domain" information available for 4Z9L, only for superseded entry 1PMQ replaced by 4Z9L)

(-) CATH Domains  (0, 0 ; only for superseded entry 1PMQ: 2,2)

(no "CATH Domain" information available for 4Z9L, only for superseded entry 1PMQ replaced by 4Z9L)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Z9L)

(-) Gene Ontology  (28, 28)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MK10_HUMAN | P53779: 1jnk 1pmn 1pmu 1pmv 2b1p 2exc 2o0u 2o2u 2ok1 2p33 2r9s 2waj 2zdt 2zdu 3cgf 3cgo 3da6 3fi2 3fi3 3fv8 3g90 3g9l 3g9n 3kvx 3oxi 3oy1 3ptg 3rtp 3tti 3ttj 3v6r 3v6s 4h36 4h39 4h3b 4kke 4kkg 4kkh 4u79 4w4v 4w4w 4w4x 4w4y 4whz 4x21 4y46 4y5h

(-) Related Entries Specified in the PDB File

1pmq THIS ENTRY REPRESENTS A RE-REFINEMENT OF PDB ENTRY 1PMQ. THE STRUCTURE FACTORS WERE TREATED USING THE DIFFRACTION ANISOTROPY SERVER. THE 880 AND ANP LIGANDS HAVE BEEN REMODELLED TO ACHIEVE IMPROVEMENT TO BOTH STEREOCHEMISTRY AND THE FIT TO ELECTRON DENSITY.