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(-) Description

Title :  CRYSTAL STRUCTURE OF STALL-1 AND BCMA
 
Authors :  G. Zhang
Date :  07 Mar 03  (Deposition) - 13 May 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R
Biol. Unit 1:  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R  (6x)
Keywords :  Ligand Receptor Complex, Immune Response (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Liu, X. Hong, J. Kappler, L. Jiang, R. Zhang, L. Xu, C. H. Pan, W. E. Martin, R. C. Murphy, H. B. Shu, S. Dai, G. Zhang
Ligand-Receptor Binding Revealed By The Tnf Family Member Tall-1.
Nature V. 423 49 2003
PubMed-ID: 12721620  |  Reference-DOI: 10.1038/NATURE01543
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 13B, SOLUBLE FORM
    Chains: A, B, C, D, E, F, G, H, I, J
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: EXTRACELLULAR DOMAIN
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TNF-AND APOL- RELATED LEUKOCYTE EXPRESSED LIGAND 1, TALL-1, B LYMPHOCYTE STIMULATOR, BLYS, B CELL- ACTIVATING FACTOR, BAFF, DENDRITIC CELL- DERIVED TNF-LIKE MOLECULE
 
Molecule 2 - TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 17
    Chains: K, L, M, N, O, P, Q, R
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: EXTRACELLULAR DOMAIN
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: B-CELL MATURATION PROTEIN

 Structural Features

(-) Chains, Units

  123456789101112131415161718
Asymmetric Unit : ABCDEFGHIJKLMNOPQR
Biological Unit 1 (6x): ABCDEFGHIJKLMNOPQR

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1OQD)

(-) Sites  (0, 0)

(no "Site" information available for 1OQD)

(-) SS Bonds  (32, 32)

Asymmetric Unit
No.Residues
1A:91 -A:104
2B:91 -B:104
3C:91 -C:104
4D:91 -D:104
5E:91 -E:104
6F:91 -F:104
7G:91 -G:104
8H:91 -H:104
9I:91 -I:104
10J:91 -J:104
11K:1 -K:14
12K:17 -K:30
13K:21 -K:34
14L:1 -L:14
15L:17 -L:30
16L:21 -L:34
17M:1 -M:14
18M:17 -M:30
19M:21 -M:34
20N:1 -N:14
21O:1 -O:14
22O:17 -O:30
23O:21 -O:34
24P:1 -P:14
25P:17 -P:30
26P:21 -P:34
27Q:1 -Q:14
28Q:17 -Q:30
29Q:21 -Q:34
30R:1 -R:14
31R:17 -R:30
32R:21 -R:34

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1OQD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1OQD)

(-) PROSITE Motifs  (1, 10)

Asymmetric Unit (1, 10)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TNF_2PS50049 TNF family profile.TN13B_HUMAN148-284
 
 
 
 
 
 
 
 
 		  10A:7-143
B:7-143
C:7-143
D:7-143
E:7-143
F:7-143
G:7-143
H:7-143
I:7-143
J:7-143
Biological Unit 1 (1, 60)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TNF_2PS50049 TNF family profile.TN13B_HUMAN148-284
 
 
 
 
 
 
 
 
 		  60A:7-143
B:7-143
C:7-143
D:7-143
E:7-143
F:7-143
G:7-143
H:7-143
I:7-143
J:7-143

(-) Exons   (7, 65)

Asymmetric Unit (7, 65)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000000532431ENSE00000829755chr16:12058964-12059311348TNR17_HUMAN1-44448K:1-37
L:1-37
M:1-37
N:1-21
O:1-37
P:1-37
Q:1-37
R:1-37		37
37
37
21
37
37
37
37
1.2ENST000000532432ENSE00000668477chr16:12060052-12060198147TNR17_HUMAN44-93507K:37-39
L:37-39
M:37-39
-
O:37-39
P:37-39
Q:37-39
R:37-39		3
3
3
-
3
3
3
3
1.4ENST000000532434ENSE00001722330chr16:12061427-12061925499TNR17_HUMAN93-184920--
2.2bENST000003758872bENSE00001811977chr13:108922066-108922582517TN13B_HUMAN1-1131130--
2.2eENST000003758872eENSE00000686291chr13:108922688-10892277285TN13B_HUMAN114-1422910A:1-1
B:1-1
C:1-1
D:1-1
E:1-1
F:1-1
G:1-1
H:1-1
I:1-1
J:1-1		1
1
1
1
1
1
1
1
1
1
2.3ENST000003758873ENSE00000854068chr13:108939151-10893920757TN13B_HUMAN142-1612010A:1-20
B:1-20
C:1-20
D:1-20
E:1-20
F:1-20
G:1-20
H:1-20
I:1-20
J:1-20		20
20
20
20
20
20
20
20
20
20
2.5aENST000003758875aENSE00000854071chr13:108955601-108955713113TN13B_HUMAN161-1983810A:20-57
B:20-57
C:20-57
D:20-57
E:20-57
F:20-57
G:20-57
H:20-57
I:20-57
J:20-57		38
38
38
38
38
38
38
38
38
38
2.5cENST000003758875cENSE00000854073chr13:108955802-108955952151TN13B_HUMAN199-2495110A:58-108
B:58-108
C:58-108
D:58-108
E:58-108
F:58-108
G:58-108
H:58-108
I:58-108
J:58-108		51
51
51
51
51
51
51
51
51
51
2.6cENST000003758876cENSE00001925016chr13:108959174-108959385212TN13B_HUMAN249-2853710A:108-144
B:108-144
C:108-144
D:108-144
E:108-144
F:108-144
G:108-144
H:108-144
I:108-144
J:108-144		37
37
37
37
37
37
37
37
37
37

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:144
 aligned with TN13B_HUMAN | Q9Y275 from UniProtKB/Swiss-Prot  Length:285

    Alignment length:144
                                   151       161       171       181       191       201       211       221       231       241       251       261       271       281    
          TN13B_HUMAN   142 VTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETLPNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLL 285
               SCOP domains d1oqda_ A: Soluble part of TALL-1, sTALL-1 (BAFF)                                                                                                SCOP domains
               CATH domains 1oqdA00 A:1-144  [code=2.60.120.40, no name defined]                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeee......eee..eee..eeeeeee...eeee..eeee...eeeeeeeeeee.....eeeeeeeee..........eeeeeeeeee.......eeeeeeeeeee....eeeeee..............eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------TNF_2  PDB: A:7-143 UniProt: 148-284                                                                                                     - PROSITE
           Transcript 2 (1) 2------------------Exon 2.5a  PDB: A:20-57               Exon 2.5c  PDB: A:58-108 UniProt: 199-249          ------------------------------------ Transcript 2 (1)
           Transcript 2 (2) Exon 2.3  PDB: A:1-2---------------------------------------------------------------------------------------Exon 2.6c  PDB: A:108-144             Transcript 2 (2)
                 1oqd A   1 VTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETLPNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLL 144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    


Chain B from PDB  Type:PROTEIN  Length:144
 aligned with TN13B_HUMAN | Q9Y275 from UniProtKB/Swiss-Prot  Length:285

    Alignment length:144
                                   151       161       171       181       191       201       211       221       231       241       251       261       271       281    
          TN13B_HUMAN   142 VTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETLPNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLL 285
               SCOP domains d1oqdb_ B: Soluble part of TALL-1, sTALL-1 (BAFF)                                                                                                SCOP domains
               CATH domains 1oqdB00 B:1-144  [code=2.60.120.40, no name defined]                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeee......eee..eee..eeeeeee...eeee..eeee...eeeeeeeeeee.....eeeeeeeee..........eeeeeeeeee.......eeeeeeeeeee....eeeeee..............eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------TNF_2  PDB: B:7-143 UniProt: 148-284                                                                                                     - PROSITE
           Transcript 2 (1) 2------------------Exon 2.5a  PDB: B:20-57               Exon 2.5c  PDB: B:58-108 UniProt: 199-249          ------------------------------------ Transcript 2 (1)
           Transcript 2 (2) Exon 2.3  PDB: B:1-2---------------------------------------------------------------------------------------Exon 2.6c  PDB: B:108-144             Transcript 2 (2)
                 1oqd B   1 VTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETLPNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLL 144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    


Chain C from PDB  Type:PROTEIN  Length:144
 aligned with TN13B_HUMAN | Q9Y275 from UniProtKB/Swiss-Prot  Length:285

    Alignment length:144
                                   151       161       171       181       191       201       211       221       231       241       251       261       271       281    
          TN13B_HUMAN   142 VTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETLPNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLL 285
               SCOP domains d1oqdc_ C: Soluble part of TALL-1, sTALL-1 (BAFF)                                                                                                SCOP domains
               CATH domains 1oqdC00 C:1-144  [code=2.60.120.40, no name defined]                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeee......eee..eee..eeeeeee...eeee..eeee...eeeeeeeeeee.....eeeeeeeee..........eeeeeeeeee.......eeeeeeeeeee....eeeeee..............eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------TNF_2  PDB: C:7-143 UniProt: 148-284                                                                                                     - PROSITE
           Transcript 2 (1) 2------------------Exon 2.5a  PDB: C:20-57               Exon 2.5c  PDB: C:58-108 UniProt: 199-249          ------------------------------------ Transcript 2 (1)
           Transcript 2 (2) Exon 2.3  PDB: C:1-2---------------------------------------------------------------------------------------Exon 2.6c  PDB: C:108-144             Transcript 2 (2)
                 1oqd C   1 VTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETLPNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLL 144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    


Chain D from PDB  Type:PROTEIN  Length:144
 aligned with TN13B_HUMAN | Q9Y275 from UniProtKB/Swiss-Prot  Length:285

    Alignment length:144
                                   151       161       171       181       191       201       211       221       231       241       251       261       271       281    
          TN13B_HUMAN   142 VTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETLPNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLL 285
               SCOP domains d1oqdd_ D: Soluble part of TALL-1, sTALL-1 (BAFF)                                                                                                SCOP domains
               CATH domains 1oqdD00 D:1-144  [code=2.60.120.40, no name defined]                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeee......eee..eee..eeeeeee...eeee..eeee...eeeeeeeeeee.....eeeeeeeee..........eeeeeeeeee.......eeeeeeeeeee....eeeee...............eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------TNF_2  PDB: D:7-143 UniProt: 148-284                                                                                                     - PROSITE
           Transcript 2 (1) 2------------------Exon 2.5a  PDB: D:20-57               Exon 2.5c  PDB: D:58-108 UniProt: 199-249          ------------------------------------ Transcript 2 (1)
           Transcript 2 (2) Exon 2.3  PDB: D:1-2---------------------------------------------------------------------------------------Exon 2.6c  PDB: D:108-144             Transcript 2 (2)
                 1oqd D   1 VTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETLPNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLL 144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    


Chain E from PDB  Type:PROTEIN  Length:144
 aligned with TN13B_HUMAN | Q9Y275 from UniProtKB/Swiss-Prot  Length:285

    Alignment length:144
                                   151       161       171       181       191       201       211       221       231       241       251       261       271       281    
          TN13B_HUMAN   142 VTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETLPNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLL 285
               SCOP domains d1oqde_ E: Soluble part of TALL-1, sTALL-1 (BAFF)                                                                                                SCOP domains
               CATH domains 1oqdE00 E:1-144  [code=2.60.120.40, no name defined]                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeee......eee..eee..eeeeeee...eeee..eeee...eeeeeeeeeee.....eeeeeeeee..........eeeeeeeeee.......eeeeeeeeeee....eeeeee..............eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------TNF_2  PDB: E:7-143 UniProt: 148-284                                                                                                     - PROSITE
           Transcript 2 (1) 2------------------Exon 2.5a  PDB: E:20-57               Exon 2.5c  PDB: E:58-108 UniProt: 199-249          ------------------------------------ Transcript 2 (1)
           Transcript 2 (2) Exon 2.3  PDB: E:1-2---------------------------------------------------------------------------------------Exon 2.6c  PDB: E:108-144             Transcript 2 (2)
                 1oqd E   1 VTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETLPNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLL 144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    


Chain F from PDB  Type:PROTEIN  Length:144
 aligned with TN13B_HUMAN | Q9Y275 from UniProtKB/Swiss-Prot  Length:285

    Alignment length:144
                                   151       161       171       181       191       201       211       221       231       241       251       261       271       281    
          TN13B_HUMAN   142 VTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETLPNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLL 285
               SCOP domains d1oqdf_ F: Soluble part of TALL-1, sTALL-1 (BAFF)                                                                                                SCOP domains
               CATH domains 1oqdF00 F:1-144  [code=2.60.120.40, no name defined]                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeee......eee..eee..eeeeeee...eeee..eeee...eeeeeeeeeee.....eeeeeeeee..........eeeeeeeeee.......eeeeeeeeeee....eeeeee..............eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------TNF_2  PDB: F:7-143 UniProt: 148-284                                                                                                     - PROSITE
           Transcript 2 (1) 2------------------Exon 2.5a  PDB: F:20-57               Exon 2.5c  PDB: F:58-108 UniProt: 199-249          ------------------------------------ Transcript 2 (1)
           Transcript 2 (2) Exon 2.3  PDB: F:1-2---------------------------------------------------------------------------------------Exon 2.6c  PDB: F:108-144             Transcript 2 (2)
                 1oqd F   1 VTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETLPNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLL 144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    


Chain G from PDB  Type:PROTEIN  Length:144
 aligned with TN13B_HUMAN | Q9Y275 from UniProtKB/Swiss-Prot  Length:285

    Alignment length:144
                                   151       161       171       181       191       201       211       221       231       241       251       261       271       281    
          TN13B_HUMAN   142 VTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETLPNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLL 285
               SCOP domains d1oqdg_ G: Soluble part of TALL-1, sTALL-1 (BAFF)                                                                                                SCOP domains
               CATH domains 1oqdG00 G:1-144  [code=2.60.120.40, no name defined]                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeee......eee..eee..eeeeeee...eeee..eeee...eeeeeeeeeee.....eeeeeeeee..........eeeeeeeeee.......eeeeeeeeeee....eeeeee..............eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------TNF_2  PDB: G:7-143 UniProt: 148-284                                                                                                     - PROSITE
           Transcript 2 (1) 2------------------Exon 2.5a  PDB: G:20-57               Exon 2.5c  PDB: G:58-108 UniProt: 199-249          ------------------------------------ Transcript 2 (1)
           Transcript 2 (2) Exon 2.3  PDB: G:1-2---------------------------------------------------------------------------------------Exon 2.6c  PDB: G:108-144             Transcript 2 (2)
                 1oqd G   1 VTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETLPNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLL 144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    


Chain H from PDB  Type:PROTEIN  Length:144
 aligned with TN13B_HUMAN | Q9Y275 from UniProtKB/Swiss-Prot  Length:285

    Alignment length:144
                                   151       161       171       181       191       201       211       221       231       241       251       261       271       281    
          TN13B_HUMAN   142 VTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETLPNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLL 285
               SCOP domains d1oqdh_ H: Soluble part of TALL-1, sTALL-1 (BAFF)                                                                                                SCOP domains
               CATH domains 1oqdH00 H:1-144  [code=2.60.120.40, no name defined]                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeee......eee..eee..eeeeeee...eeee..eeee...eeeeeeeeeee.....eeeeeeeee..........eeeeeeeeee.......eeeeeeeeeee....eeeeee..............eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------TNF_2  PDB: H:7-143 UniProt: 148-284                                                                                                     - PROSITE
           Transcript 2 (1) 2------------------Exon 2.5a  PDB: H:20-57               Exon 2.5c  PDB: H:58-108 UniProt: 199-249          ------------------------------------ Transcript 2 (1)
           Transcript 2 (2) Exon 2.3  PDB: H:1-2---------------------------------------------------------------------------------------Exon 2.6c  PDB: H:108-144             Transcript 2 (2)
                 1oqd H   1 VTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETLPNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLL 144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    


Chain I from PDB  Type:PROTEIN  Length:144
 aligned with TN13B_HUMAN | Q9Y275 from UniProtKB/Swiss-Prot  Length:285

    Alignment length:144
                                   151       161       171       181       191       201       211       221       231       241       251       261       271       281    
          TN13B_HUMAN   142 VTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETLPNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLL 285
               SCOP domains d1oqdi_ I: Soluble part of TALL-1, sTALL-1 (BAFF)                                                                                                SCOP domains
               CATH domains 1oqdI00 I:1-144  [code=2.60.120.40, no name defined]                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeee......eee..eee..eeeeeee...eeee..eeee...eeeeeeeeeee.....eeeeeeeee..........eeeeeeeeee.......eeeeeeeeeee....eeeeee..............eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------TNF_2  PDB: I:7-143 UniProt: 148-284                                                                                                     - PROSITE
           Transcript 2 (1) 2------------------Exon 2.5a  PDB: I:20-57               Exon 2.5c  PDB: I:58-108 UniProt: 199-249          ------------------------------------ Transcript 2 (1)
           Transcript 2 (2) Exon 2.3  PDB: I:1-2---------------------------------------------------------------------------------------Exon 2.6c  PDB: I:108-144             Transcript 2 (2)
                 1oqd I   1 VTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETLPNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLL 144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    


Chain J from PDB  Type:PROTEIN  Length:144
 aligned with TN13B_HUMAN | Q9Y275 from UniProtKB/Swiss-Prot  Length:285

    Alignment length:144
                                   151       161       171       181       191       201       211       221       231       241       251       261       271       281    
          TN13B_HUMAN   142 VTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETLPNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLL 285
               SCOP domains d1oqdj_ J: Soluble part of TALL-1, sTALL-1 (BAFF)                                                                                                SCOP domains
               CATH domains 1oqdJ00 J:1-144  [code=2.60.120.40, no name defined]                                                                                             CATH domains
           Pfam domains (1) --------------------------TNF-1oqdJ01 J:27-143                                                                                                 - Pfam domains (1)
           Pfam domains (2) --------------------------TNF-1oqdJ02 J:27-143                                                                                                 - Pfam domains (2)
           Pfam domains (3) --------------------------TNF-1oqdJ03 J:27-143                                                                                                 - Pfam domains (3)
           Pfam domains (4) --------------------------TNF-1oqdJ04 J:27-143                                                                                                 - Pfam domains (4)
           Pfam domains (5) --------------------------TNF-1oqdJ05 J:27-143                                                                                                 - Pfam domains (5)
           Pfam domains (6) --------------------------TNF-1oqdJ06 J:27-143                                                                                                 - Pfam domains (6)
           Pfam domains (7) --------------------------TNF-1oqdJ07 J:27-143                                                                                                 - Pfam domains (7)
           Pfam domains (8) --------------------------TNF-1oqdJ08 J:27-143                                                                                                 - Pfam domains (8)
           Pfam domains (9) --------------------------TNF-1oqdJ09 J:27-143                                                                                                 - Pfam domains (9)
          Pfam domains (10) --------------------------TNF-1oqdJ10 J:27-143                                                                                                 - Pfam domains (10)
         Sec.struct. author ....eeeeee......eee..eee..eeeeeee...eeee..eeee...eeeeeeeeeee.....eeeeeeeee..........eeeeeeeeee.......eeeeeeeeeee....eeeeee..............eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------TNF_2  PDB: J:7-143 UniProt: 148-284                                                                                                     - PROSITE
           Transcript 2 (1) 2------------------Exon 2.5a  PDB: J:20-57               Exon 2.5c  PDB: J:58-108 UniProt: 199-249          ------------------------------------ Transcript 2 (1)
           Transcript 2 (2) Exon 2.3  PDB: J:1-2---------------------------------------------------------------------------------------Exon 2.6c  PDB: J:108-144             Transcript 2 (2)
                 1oqd J   1 VTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETLPNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLL 144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    


Chain K from PDB  Type:PROTEIN  Length:39
 aligned with TNR17_HUMAN | Q02223 from UniProtKB/Swiss-Prot  Length:184

    Alignment length:39
                                    17        27        37         
          TNR17_HUMAN     8 CSQNEYFDSLLHACIPCQLRCSSNTPPLTCQRYCNASVT  46
               SCOP domains d1oqdk_ K:                              SCOP domains
               CATH domains --------------------------------------- CATH domains
               Pfam domains --------------------------------------- Pfam domains
         Sec.struct. author ....eeee....eeeehhhhhh....hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: K:1-37 UniProt: 1-44  -- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------1.2 Transcript 1 (2)
                 1oqd K   1 CSQNEYFDSLLHACIPCQLRCSSNTPPLTCQRYCNASVT  39
                                    10        20        30         


Chain L from PDB  Type:PROTEIN  Length:39
 aligned with TNR17_HUMAN | Q02223 from UniProtKB/Swiss-Prot  Length:184

    Alignment length:39
                                    17        27        37         
          TNR17_HUMAN     8 CSQNEYFDSLLHACIPCQLRCSSNTPPLTCQRYCNASVT  46
               SCOP domains d1oqdl_ L:                              SCOP domains
               CATH domains --------------------------------------- CATH domains
               Pfam domains --------------------------------------- Pfam domains
         Sec.struct. author ....eeee....eeeehhhhhh................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: L:1-37 UniProt: 1-44  -- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------1.2 Transcript 1 (2)
                 1oqd L   1 CSQNEYFDSLLHACIPCQLRCSSNTPPLTCQRYCNASVT  39
                                    10        20        30         


Chain M from PDB  Type:PROTEIN  Length:39
 aligned with TNR17_HUMAN | Q02223 from UniProtKB/Swiss-Prot  Length:184

    Alignment length:39
                                    17        27        37         
          TNR17_HUMAN     8 CSQNEYFDSLLHACIPCQLRCSSNTPPLTCQRYCNASVT  46
               SCOP domains d1oqdm_ M:                              SCOP domains
               CATH domains --------------------------------------- CATH domains
               Pfam domains --------------------------------------- Pfam domains
         Sec.struct. author ....eeee....eeeehhhhhhh........hhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: M:1-37 UniProt: 1-44  -- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------1.2 Transcript 1 (2)
                 1oqd M   1 CSQNEYFDSLLHACIPCQLRCSSNTPPLTCQRYCNASVT  39
                                    10        20        30         


Chain N from PDB  Type:PROTEIN  Length:21
 aligned with TNR17_HUMAN | Q02223 from UniProtKB/Swiss-Prot  Length:184

    Alignment length:21
                                    17        27 
          TNR17_HUMAN     8 CSQNEYFDSLLHACIPCQLRC  28
               SCOP domains d1oqdn_ N:            SCOP domains
               CATH domains --------------------- CATH domains
               Pfam domains --------------------- Pfam domains
         Sec.struct. author .....eee....eeehhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------- SAPs(SNPs)
                    PROSITE --------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: N:1-21 Transcript 1 (1)
           Transcript 1 (2) --------------------- Transcript 1 (2)
                 1oqd N   1 CSQNEYFDSLLHACIPCQLRC  21
                                    10        20 


Chain O from PDB  Type:PROTEIN  Length:39
 aligned with TNR17_HUMAN | Q02223 from UniProtKB/Swiss-Prot  Length:184

    Alignment length:39
                                    17        27        37         
          TNR17_HUMAN     8 CSQNEYFDSLLHACIPCQLRCSSNTPPLTCQRYCNASVT  46
               SCOP domains d1oqdo_ O:                              SCOP domains
               CATH domains --------------------------------------- CATH domains
               Pfam domains --------------------------------------- Pfam domains
         Sec.struct. author ....eeee....eeeehhhhhh.......hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: O:1-37 UniProt: 1-44  -- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------1.2 Transcript 1 (2)
                 1oqd O   1 CSQNEYFDSLLHACIPCQLRCSSNTPPLTCQRYCNASVT  39
                                    10        20        30         


Chain P from PDB  Type:PROTEIN  Length:39
 aligned with TNR17_HUMAN | Q02223 from UniProtKB/Swiss-Prot  Length:184

    Alignment length:39
                                    17        27        37         
          TNR17_HUMAN     8 CSQNEYFDSLLHACIPCQLRCSSNTPPLTCQRYCNASVT  46
               SCOP domains d1oqdp_ P:                              SCOP domains
               CATH domains --------------------------------------- CATH domains
               Pfam domains --------------------------------------- Pfam domains
         Sec.struct. author ....eeee....eeeehhhhhh.......hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: P:1-37 UniProt: 1-44  -- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------1.2 Transcript 1 (2)
                 1oqd P   1 CSQNEYFDSLLHACIPCQLRCSSNTPPLTCQRYCNASVT  39
                                    10        20        30         


Chain Q from PDB  Type:PROTEIN  Length:39
 aligned with TNR17_HUMAN | Q02223 from UniProtKB/Swiss-Prot  Length:184

    Alignment length:39
                                    17        27        37         
          TNR17_HUMAN     8 CSQNEYFDSLLHACIPCQLRCSSNTPPLTCQRYCNASVT  46
               SCOP domains d1oqdq_ Q:                              SCOP domains
               CATH domains --------------------------------------- CATH domains
               Pfam domains --------------------------------------- Pfam domains
         Sec.struct. author ....eeee....eeeehhhhhh.......hhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: Q:1-37 UniProt: 1-44  -- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------1.2 Transcript 1 (2)
                 1oqd Q   1 CSQNEYFDSLLHACIPCQLRCSSNTPPLTCQRYCNASVT  39
                                    10        20        30         


Chain R from PDB  Type:PROTEIN  Length:39
 aligned with TNR17_HUMAN | Q02223 from UniProtKB/Swiss-Prot  Length:184

    Alignment length:39
                                    17        27        37         
          TNR17_HUMAN     8 CSQNEYFDSLLHACIPCQLRCSSNTPPLTCQRYCNASVT  46
               SCOP domains d1oqdr_ R:                              SCOP domains
               CATH domains --------------------------------------- CATH domains
           Pfam domains (1) BCMA-Tall_bind-1oqdR01 R:1-39           Pfam domains (1)
           Pfam domains (2) BCMA-Tall_bind-1oqdR02 R:1-39           Pfam domains (2)
           Pfam domains (3) BCMA-Tall_bind-1oqdR03 R:1-39           Pfam domains (3)
           Pfam domains (4) BCMA-Tall_bind-1oqdR04 R:1-39           Pfam domains (4)
           Pfam domains (5) BCMA-Tall_bind-1oqdR05 R:1-39           Pfam domains (5)
           Pfam domains (6) BCMA-Tall_bind-1oqdR06 R:1-39           Pfam domains (6)
           Pfam domains (7) BCMA-Tall_bind-1oqdR07 R:1-39           Pfam domains (7)
           Pfam domains (8) BCMA-Tall_bind-1oqdR08 R:1-39           Pfam domains (8)
         Sec.struct. author ....eeee....eeeehhhhhh.......hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: R:1-37 UniProt: 1-44  -- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------1.2 Transcript 1 (2)
                 1oqd R   1 CSQNEYFDSLLHACIPCQLRCSSNTPPLTCQRYCNASVT  39
                                    10        20        30
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 18)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Small proteins (3458)

(-) CATH Domains  (1, 10)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)
(-)
Architecture: Sandwich (5577)
(-)
Topology: Jelly Rolls (1293)
(-)
Homologous Superfamily: [code=2.60.120.40, no name defined] (56)
(-)
Human (Homo sapiens) (38)
1a1oqdA00A:1-144
1b1oqdF00F:1-144
1c1oqdG00G:1-144
1d1oqdH00H:1-144
1e1oqdI00I:1-144
1f1oqdJ00J:1-144
1g1oqdB00B:1-144
1h1oqdC00C:1-144
1i1oqdD00D:1-144
1j1oqdE00E:1-144

(-) Pfam Domains  (2, 18)

Asymmetric Unit
(-)
Clan: C1q_TNF (45)
(-)
Family: TNF (37)
(-)
Homo sapiens (Human) (26)
1aTNF-1oqdJ01J:27-143
1bTNF-1oqdJ02J:27-143
1cTNF-1oqdJ03J:27-143
1dTNF-1oqdJ04J:27-143
1eTNF-1oqdJ05J:27-143
1fTNF-1oqdJ06J:27-143
1gTNF-1oqdJ07J:27-143
1hTNF-1oqdJ08J:27-143
1iTNF-1oqdJ09J:27-143
1jTNF-1oqdJ10J:27-143
(-)
Clan: no clan defined [family: BCMA-Tall_bind] (3)

(-) Gene Ontology  (23, 30)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J   (TN13B_HUMAN | Q9Y275)
molecular function
    GO:0005125    cytokine activity    Functions to control the survival, growth, differentiation and effector function of tissues and cells.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
    GO:0005164    tumor necrosis factor receptor binding    Interacting selectively and non-covalently with the tumor necrosis factor receptor.
biological process
    GO:0008283    cell proliferation    The multiplication or reproduction of cells, resulting in the expansion of a cell population.
    GO:0006955    immune response    Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
    GO:0002376    immune system process    Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
    GO:0030890    positive regulation of B cell proliferation    Any process that activates or increases the rate or extent of B cell proliferation.
    GO:0008284    positive regulation of cell proliferation    Any process that activates or increases the rate or extent of cell proliferation.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0033209    tumor necrosis factor-mediated signaling pathway    A series of molecular signals initiated by the binding of a tumor necrosis factor to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0048471    perinuclear region of cytoplasm    Cytoplasm situated near, or occurring around, the nucleus.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain K,L,M,N,O,P,Q,R   (TNR17_HUMAN | Q02223)
molecular function
    GO:0004872    receptor activity    Combining with an extracellular or intracellular messenger to initiate a change in cell activity.
biological process
    GO:0002250    adaptive immune response    An immune response mediated by cells expressing specific receptors for antigen produced through a somatic diversification process, and allowing for an enhanced secondary response to subsequent exposures to the same antigen (immunological memory).
    GO:0008283    cell proliferation    The multiplication or reproduction of cells, resulting in the expansion of a cell population.
    GO:0002376    immune system process    Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
    GO:0002260    lymphocyte homeostasis    The process of regulating the proliferation and elimination of lymphocytes such that the total number of lymphocytes within a whole or part of an organism is stable over time in the absence of an outside stimulus.
    GO:0007275    multicellular organism development    The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0033209    tumor necrosis factor-mediated signaling pathway    A series of molecular signals initiated by the binding of a tumor necrosis factor to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription.
cellular component
    GO:0012505    endomembrane system    A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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  1oqd
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  TN13B_HUMAN | Q9Y275
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  TNR17_HUMAN | Q02223
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TN13B_HUMAN | Q9Y275: 1jh5 1kd7 1kxg 1oqe 1osg 3v56 4v46 4zch
        TNR17_HUMAN | Q02223: 1xu2 2kn1 4zfo

(-) Related Entries Specified in the PDB File

1jh5 THE SAME PROTEIN COMPLEXED WITH BCMA
1oqe