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(-) Description

Title :  SINGLE-CHAIN HUMAN APRIL-BAFF-BAFF HETEROTRIMER
 
Authors :  A. Lammens, X. Jiang, K. Maskos, P. Schneider
Date :  16 Apr 15  (Deposition) - 13 May 15  (Release) - 08 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.43
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  B-Cell Activating Factor, A Proliferation-Inducing Ligand, Tnf Superfamily; Cytokine, Proteros Biostructures Gmbh, Cytokine (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Schuepbach-Mallepell, D. Das, L. Willen, M. Vigolo, A. Tardivel, L. Lebon, C. Kowalczyk-Quintas, J. Nys, C. Smulski, T. S. Zheng, K. Maskos, A. Lammens, X. Jiang, H. Hess, S. L. Tan, P. Schneider
Stoichiometry Of Heteromeric Baff And April Cytokines Dictates Their Receptor Binding And Signaling Properties.
J. Biol. Chem. V. 290 16330 2015
PubMed-ID: 25953898  |  Reference-DOI: 10.1074/JBC.M115.661405

(-) Compounds

Molecule 1 - TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 13,TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 13B,TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 13B
    Chains: A, B
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK 293
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Gene: TNFSF13, APRIL, TALL2, ZTNF2, UNQ383/PRO715, TNFSF13B, BAFF, BLYS, TALL1, TNFSF20, ZTNF4, UNQ401/PRO738
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: THE COMPOUND IS A SINGLE CHAIN APRIL-BAFF-BAFF HETEROTRIMER FROM THE CONSTRUCT OF HIS-FLAG-TEV-GS-HAPRIL (AA111-250, T126A)-GGGGS-HBAFF(AA140-285)-GGGGS-HBAFF(AA140-285) WITH CLEAVED TAGS.
    Synonym: A PROLIFERATION-INDUCING LIGAND,APRIL,TNF- AND APOL-RELATED LEUKOCYTE EXPRESSED LIGAND 2,TALL-2,TNF-RELATED DEATH LIGAND 1,TRDL- 1,B LYMPHOCYTE STIMULATOR,BLYS,B-CELL-ACTIVATING FACTOR,BAFF, DENDRITIC CELL-DERIVED TNF-LIKE MOLECULE,TNF- AND APOL-RELATED LEUKOCYTE EXPRESSED LIGAND 1,TALL-1,B LYMPHOCYTE STIMULATOR,BLYS,B- CELL-ACTIVATING FACTOR,BAFF,DENDRITIC CELL-DERIVED TNF-LIKE MOLECULE, TNF- AND APOL-RELATED LEUKOCYTE EXPRESSED LIGAND 1,TALL-1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
11441Ligand/IonTRIS-HYDROXYMETHYL-METHYL-AMMONIUM
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
11441Ligand/IonTRIS-HYDROXYMETHYL-METHYL-AMMONIUM
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1144-1Ligand/IonTRIS-HYDROXYMETHYL-METHYL-AMMONIUM

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:83 , THR A:84 , LEU A:85 , PHE A:109 , GLY A:282 , ASP A:283binding site for residue 144 A 501

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:88 -A:103
2A:240 -A:253
3A:391 -A:404
4B:88 -B:103
5B:240 -B:253
6B:391 -B:404

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ZCH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZCH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZCH)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZCH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:422
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee.....eeeeeeeeeee...eee....eee...eeeeeeeeeee.....eeeeeeeee....eeeeeeeeee........eeeeeeeeeee....eeeeee......ee......eeeeee.....eeeeee......eee..eee..eeeeeee...eeee..eeee...eeeeeeeeeee.....eeeeeeeee..........eeeeeeeeee.......eeeeeeeeeee....eeeeee..............eeeeee.......eeeeee......eee..eee..eeeeeee...eeee..eeee...eeeeeeeeeee.....eeeeeeeeeeee....eeeeeeeeeeeee.......eeeeeeeeeee....eeeeee..............eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zch A   7 HSVLHLVPINAASDSDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMPHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGTFLGFVKLVTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETLPNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLLGVTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETLPNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLL 444
                                    16  ||    28        38        48        58        68        78        88    ||  99       109       119       129       139  ||   156       166       176       186       196       206       216       226       236       246       256       266       276       286       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442  
                                       19|                                                                     93|                                            142|                                                                                                                                             294|                                                                                                                                               
                                        22                                                                      95                                             150                                                                                                                                              301                                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:419
                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee...eeeeeeeeeee...eeee..eeee...eeeeeeeeeee.........eeeeee..eeeeeee...........eeeeeeeeeee....eeeeee..............eeeeee....eeeeee......eee..eee..eeeeeee...eeee..eeee...eeeeeeeeeee.....eeeeeeeee..........eeeeeeeeee.......eeeeeeeeeee....eeeeee..............eeeeee........eeeeee......ee....ee..eeeeeee...eeee..eeee...eeeeeeeeeee.....eeeeeeeeeeee....eeeeeeeeeeeee.......eeeeeeeeeee....eeeeee......ee......eeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zch B   7 HSVLHLVPINAASDVTEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMPPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGTFLGFVKLTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETLPNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLLGTVTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETLPNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLL 444
                                    16  ||    30        40        50        60        70        80        90  ||   102       112       122       132       142|      160       170       180       190       200       210       220       230       240       250       260       270       280       290   ||  305       315       325       335       345       355       365       375       385       395       405       415       425       435         
                                       19|                                                                   93|                                           142|                                                                                                                                            294|                                                                                                                                                
                                        24                                                                    96                                            151                                                                                                                                             300
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZCH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZCH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZCH)

(-) Gene Ontology  (23, 35)

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 Related Entries

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        TN13B_HUMAN | Q9Y275: 1jh5 1kd7 1kxg 1oqd 1oqe 1osg 3v56 4v46

(-) Related Entries Specified in the PDB File

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